View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1931_low_5 (Length: 394)

Name: NF1931_low_5
Description: NF1931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1931_low_5
NF1931_low_5
[»] chr4 (3 HSPs)
chr4 (137-229)||(2155971-2156063)
chr4 (297-376)||(2155824-2155903)
chr4 (11-62)||(2156139-2156190)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 2156063 - 2155971
Alignment:
Q  137 cagctgtggcaccttctcttgttgacattattgtggtaactccttatgattctcaaattgtattgaaggtacacattttttctcacattcatc 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2156063 cagctgtggcaccttctcttgttgacattattgtggtaactccttatgattctcaaattgtattgaaggtacacattttttctcacattcatc 2155971  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 2155903 - 2155824
Alignment:
Q  297 gtgcaaaagggtatctcaactgataagatacttgatgtgaggaagctattggctgtgaaggtggagacatgccattttac 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2155903 gtgcaaaagggtatctcaactgataagatacttgatgtgaggaagctattggctgtgaaggtggagacatgccattttac 2155824  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 2156190 - 2156139
Alignment:
Q  11 gagatgaagaaaaaggaggagaaaggtcacattctttatcttacttcaagaa 62  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2156190 gagaagaagaaaaaggaggagaaaggtcacattctttatcttacttcaagaa 2156139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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