View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1931_low_7 (Length: 354)
Name: NF1931_low_7
Description: NF1931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1931_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 39584540 - 39584195
Alignment:
| Q |
1 |
caccatgttgtagaataatctacatgaatgcaagatgaacttatcattattgatccctcnnnnnnnnnnnnn---gaacttatcattattgatgcattgc |
97 |
Q |
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| T |
39584540 |
caccatgttgtagaataatttacatgaatgcaagatgaacttatcattattgatccctcaaaaaaaaaaaaaaaagaacttatcattattgatgcattgc |
39584441 |
T |
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| Q |
98 |
acatatactataatttctgttttcttttttcttcaataaaattataatataatg-tttcagttagttttcctgttattgtacaaatttgtctaataatat |
196 |
Q |
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| T |
39584440 |
acatatactataatttctgttttcttttttcttcaataaaattataatataatgctttcagttagttttcctgttattgtacaaatttgtctaataatat |
39584341 |
T |
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| Q |
197 |
gtcaattttaatatgatgatttcagttagtttttctgtgacttgtgtacaaaaaatgtgaatacaagttggtatataacagtgagttcttcggtggtcca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39584340 |
gtcaattttaatatgatgatttcagttagtttttctgtgacttgtgtacaaaaaatgtgaatacaagttggtatataacagtgagttcttcggtggtcca |
39584241 |
T |
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| Q |
297 |
ccgtgaaccactaaaaaattatagaaattccatagcggttgatgat |
342 |
Q |
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| T |
39584240 |
ccgtgaaccactaaaaaattatagaaatttcatagcggttgatgat |
39584195 |
T |
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