View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1931_low_8 (Length: 329)
Name: NF1931_low_8
Description: NF1931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1931_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 17379972 - 17379766
Alignment:
| Q |
1 |
taagagtttgaagtttgggacaatctgcagcatttt-aacctgtgtgaaatattaattttcctatgtggtttggttttgagcatttggcttgaccggact |
99 |
Q |
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| T |
17379972 |
taagagtttgaagtttgggccaatctgtagcatttttaacctgtgtgaaatattaattttcctatgtggtttgattttgagcatttggcttgatcagact |
17379873 |
T |
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| Q |
100 |
attaatctgtctccaccttagaagacaatgttaacttgcgttattgattgttttttggttatattagtctgctgataattttttatggaataattaattt |
199 |
Q |
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| T |
17379872 |
attaatctctctataccttagaagacaatgttaacttgcgttattgattgttttttggttatattagtctgatgataattttttatggaataattaattt |
17379773 |
T |
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| Q |
200 |
tgtttag |
206 |
Q |
| |
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||||||| |
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| T |
17379772 |
tgtttag |
17379766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 17395366 - 17395245
Alignment:
| Q |
56 |
ttttcctatgtggtttggttttgagcattt-ggcttgaccggactattaatctgtctccaccttagaagacaatgttaacttgcgttattgattgttttt |
154 |
Q |
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| T |
17395366 |
ttttcctatgtggtttgattttgaacattttggtttgactggactatt----tgtc-ccaccttagaagaaactgttaacttgcgctattgattgttatt |
17395272 |
T |
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| Q |
155 |
tggttatattagtctgctgataatttt |
181 |
Q |
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| T |
17395271 |
tgattatattagtttgctaataatttt |
17395245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 17398900 - 17398821
Alignment:
| Q |
174 |
ataattttttatggaataattaattttgtttagcatgatgagaaaaggcttttatttctctttgttatccccattatgag |
253 |
Q |
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| T |
17398900 |
ataattttttgtggaataatttcttttgtttagcatgatggcaaaaagctcttatttctctttgttatctcaattatgag |
17398821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 4816584 - 4816540
Alignment:
| Q |
196 |
attttgtttagcatgatgagaaaaggcttttatttctctttgtta |
240 |
Q |
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| T |
4816584 |
attttgtttagcatgatgccaaaaggctcttatttctctttgtta |
4816540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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