View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19320_high_10 (Length: 409)
Name: NF19320_high_10
Description: NF19320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19320_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 1469409 - 1469023
Alignment:
| Q |
16 |
atgatagtgccttaaagtactccataagcttc------accctcattagttgtcacagtaagggcatgttttagtggtttgactcaaacaaagtgtccta |
109 |
Q |
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| T |
1469409 |
atgatagtgccttaaagtactccataagcttcgccttcaccctcattagttgtcacagtaagggcatgttttagtggtttgactcaaacaaagtgtccta |
1469310 |
T |
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| Q |
110 |
gctcatcatggatacacatttcaatgcctaccacatgagtaagaaaataaagaataaatttaacatttggaggcttgatccatctagccaaagaaggatg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1469309 |
gctcatcatggatacacatttcaatgcctaccacatgagtaagaaaataaagaataaatttaacatttggaggcttgatccatctagtcaaagaaggatg |
1469210 |
T |
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| Q |
210 |
aactgatgactttgcttgttgagtatt---gaagtattgtccctgctgccacttcatcacgatcatactaaactcgaacgaaattcccctcacctaaagc |
306 |
Q |
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||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1469209 |
aactgatgagtttgcttgttgagtattgaagaagtattgtacctgctgccacttcatcacgatcatactaaactcgaacgaaattcccctcacctaaagc |
1469110 |
T |
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| Q |
307 |
cttcttttaccaaaactttggatgtccatataaattattgagagttaacaacaaagaaaaggatataaactaatacaatagctgacc |
393 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1469109 |
cttcttttaccaaaagtttggatgtccatataaattattgagagttaacaacaaagaaaaggatataaactaatacaatagctgacc |
1469023 |
T |
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