View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19320_high_12 (Length: 388)

Name: NF19320_high_12
Description: NF19320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19320_high_12
NF19320_high_12
[»] chr5 (9 HSPs)
chr5 (83-253)||(30747796-30747966)
chr5 (130-253)||(30481548-30481671)
chr5 (311-373)||(30340198-30340260)
chr5 (311-373)||(30481726-30481788)
chr5 (311-373)||(30748025-30748087)
chr5 (98-241)||(29870405-29870539)
chr5 (94-160)||(30244267-30244333)
chr5 (98-161)||(29851514-29851577)
chr5 (313-345)||(29870580-29870612)
[»] chr4 (1 HSPs)
chr4 (313-345)||(20298402-20298434)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 30747796 - 30747966
Alignment:
Q  83 ggaatagaccttgattatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaagacttcgtcttcgtgattgggtat 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30747796 ggaatagaccttgattatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaagacttcgtcttcgtcattgggtat 30747895  T
Q  183 gtttgttccattaatcccgttatttgtcttgtgtgttgaaggcaatcctaaccattcaattaaatccccac 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30747896 gtttgttccattaatcccgttatttgtcttgtgtgttgaaggcaatcctaaccattcaattaaatccccac 30747966  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 30481548 - 30481671
Alignment:
Q  130 gacccattgtcgcttcctccactctaaaagacttcgtcttcgtgattgggtatgtttgttccattaatcccgttatttgtcttgtgtgttgaaggcaatc 229  Q
    ||||||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || | |||||    
T  30481548 gacccattgtcacttcctccactccaaaagactgcgtcttcgtcattgggtatgtttgttccattaatcccgttatttgtcttgtgtgtcgacgccaatc 30481647  T
Q  230 ctaaccattcaattaaatccccac 253  Q
    ||||||||||||||||||||||||    
T  30481648 ctaaccattcaattaaatccccac 30481671  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 30340260 - 30340198
Alignment:
Q  311 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatct 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340260 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatct 30340198  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 311 - 373
Target Start/End: Original strand, 30481726 - 30481788
Alignment:
Q  311 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatct 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30481726 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatct 30481788  T

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Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 311 - 373
Target Start/End: Original strand, 30748025 - 30748087
Alignment:
Q  311 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatct 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30748025 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatct 30748087  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 241
Target Start/End: Original strand, 29870405 - 29870539
Alignment:
Q  98 tatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaagacttcgtcttcgtgattgggtatgtttgtt-ccattaa 196  Q
    ||||||||||||||||||||||||||| || |||| | ||||| | |||||||||| ||||||| |  ||||| | ||| |||| ||||||| |  ||||    
T  29870405 tatcaaaatcgcaatcctcgataccaccaccggactcgttgtcacctcctccactccaaaagacgttctcttcatcattaggtacgtttgttacggttaa 29870504  T
Q  197 tcccgttatttgtcttgtgtgttgaaggcaatcctaaccattcaa 241  Q
    |||          ||||||||||||||||||||||||||||||||    
T  29870505 tcc----------cttgtgtgttgaaggcaatcctaaccattcaa 29870539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 30244333 - 30244267
Alignment:
Q  94 tgattatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaaga 160  Q
    |||| ||||||||||||||||||||| |||| ||||||| | ||||| | |||||||||| ||||||    
T  30244333 tgataatcaaaatcgcaatcctcgatgccacgactggactcgttgtcacctcctccactccaaaaga 30244267  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 29851514 - 29851577
Alignment:
Q  98 tatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaagac 161  Q
    ||||||||||||||||||||||||||| || ||||  ||||||   |||||||||| |||||||    
T  29851514 tatcaaaatcgcaatcctcgataccaccaccggacttattgtcatctcctccactccaaaagac 29851577  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 29870580 - 29870612
Alignment:
Q  313 atgatgaagaaaatgacctgaattagaacattt 345  Q
    |||||||||||||| ||||||||||||||||||    
T  29870580 atgatgaagaaaattacctgaattagaacattt 29870612  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 20298434 - 20298402
Alignment:
Q  313 atgatgaagaaaatgacctgaattagaacattt 345  Q
    |||||||||||||| ||||||||||||||||||    
T  20298434 atgatgaagaaaattacctgaattagaacattt 20298402  T

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