View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19320_high_13 (Length: 374)
Name: NF19320_high_13
Description: NF19320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19320_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 134 - 360
Target Start/End: Original strand, 28796790 - 28797016
Alignment:
| Q |
134 |
ggaactagtcaattttcttgcacagcactccaagaaacttccttggatggatcactctaccnnnnnnnnnnnnnnnngcttcataagtcaatagttctca |
233 |
Q |
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| T |
28796790 |
ggaactagtcaattttcttgcacatcactccaagaaacttccttggatggatcactctaccaaaaataaaaaataaagcttcctaagtcaatagttctca |
28796889 |
T |
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| Q |
234 |
cttatttattaatatagcaattacaacgcagcaagctttctagtaaataattatcaatttttatctcannnnnnnnnaatagatttctctttttcaaagt |
333 |
Q |
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| T |
28796890 |
cttatttattaatatagcaatttccacgcagcaagctttctagtaaataattctcaatttttatctcatttttttttaatatatttctctttttcaaagt |
28796989 |
T |
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| Q |
334 |
ttgactccaattacttaacatacatat |
360 |
Q |
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| T |
28796990 |
ttgactccaattactcaacatacatat |
28797016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 28796658 - 28796729
Alignment:
| Q |
2 |
gaacttcacaattgtgtgtagctttatgtgatatagtaaatttttgtatgaacatttgatatgttgggacac |
73 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
28796658 |
gaacttcacaattgtgtgtagctttatgtgatatagtaaaattttgtatgaacatttgatatgttggaacac |
28796729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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