View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19320_high_2 (Length: 593)
Name: NF19320_high_2
Description: NF19320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19320_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 256 - 577
Target Start/End: Complemental strand, 37927759 - 37927435
Alignment:
| Q |
256 |
cttttgaggtagccatagctacccctttgatgaacaaatattattcatccctgaatgtgggactaataacaaactagaaacaactttaaaact---ttca |
352 |
Q |
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| T |
37927759 |
cttttgaggtagccatagctacccctttgatgaacaaacattgatca-ccctgaacatgagactaataacaaactacaaacaacttcaaaactaacttca |
37927661 |
T |
|
| Q |
353 |
aaagagatatgcaagcatgatctccatggattatttggactaaagtggggcatgacttcactttgtaagggttattttgaannnnnnn-catcattaaaa |
451 |
Q |
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| T |
37927660 |
acagagatatgcaggcatgatctccatggattatctggactaaagtggggcatcacttcactttgtaagggttattttgaaaaaaatttcatcattaaaa |
37927561 |
T |
|
| Q |
452 |
gatgttaggaaggttagattagatctatcaattcatggaatttaaaccttggttttttgaaacttttcccttggaggaaaggttttaaccctagcatatg |
551 |
Q |
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| T |
37927560 |
gatgttaggaaggttagattagatctatcaattcatggaatttaaaccttggttttttgaaacttttcacttggaggaaaggttttaaccctagcatatg |
37927461 |
T |
|
| Q |
552 |
ctaaaacaaacctctgcacaagtttg |
577 |
Q |
| |
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| T |
37927460 |
ctaaaacaaacctctgcacaagtttg |
37927435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 34 - 171
Target Start/End: Complemental strand, 37927967 - 37927830
Alignment:
| Q |
34 |
tagagaactgtacctaaaaagtaacttgataactagtagctatttatgaaagtcgaacttagcgacccttcaaagactcaagtaaattgaaattcggcta |
133 |
Q |
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||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37927967 |
tagagaactgtacctaaaaagtaacttgatagctagtggttatttatgaaagtcgaacttagcgacccttcaaagactcaagtaaatcgaaattcggctg |
37927868 |
T |
|
| Q |
134 |
gaaagtaaccaaagtcagacaaaaatttatttcaccta |
171 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
37927867 |
aaaagtaaccaaagtcagacaaaaatttatttcaccta |
37927830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 30226289 - 30226336
Alignment:
| Q |
67 |
tagtagctatttatgaaagtcgaacttagcgacccttcaaagactcaa |
114 |
Q |
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||||||||||||| ||||||||||||| |||| ||||||||||||||| |
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| T |
30226289 |
tagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaa |
30226336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 24783152 - 24783199
Alignment:
| Q |
67 |
tagtagctatttatgaaagtcgaacttagcgacccttcaaagactcaa |
114 |
Q |
| |
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| T |
24783152 |
tagtagctatttatgaaaatcgaactcggcgaccattcaaagactcaa |
24783199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 41532859 - 41532812
Alignment:
| Q |
67 |
tagtagctatttatgaaagtcgaacttagcgacccttcaaagactcaa |
114 |
Q |
| |
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||||||||||||| ||||||||||||| |||| ||||||||||||||| |
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|
| T |
41532859 |
tagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaa |
41532812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 52725052 - 52725005
Alignment:
| Q |
67 |
tagtagctatttatgaaagtcgaacttagcgacccttcaaagactcaa |
114 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| ||||||||||||||| |
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| T |
52725052 |
tagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaa |
52725005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 21612995 - 21613042
Alignment:
| Q |
67 |
tagtagctatttatgaaagtcgaacttagcgacccttcaaagactcaa |
114 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| ||||||||||||||| |
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|
| T |
21612995 |
tagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaa |
21613042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 41055506 - 41055553
Alignment:
| Q |
67 |
tagtagctatttatgaaagtcgaacttagcgacccttcaaagactcaa |
114 |
Q |
| |
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|||||||||||||||||||||||||| | ||||| || |||||||||| |
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| T |
41055506 |
tagtagctatttatgaaagtcgaactcaacgaccttttaaagactcaa |
41055553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 8403911 - 8403864
Alignment:
| Q |
67 |
tagtagctatttatgaaagtcgaacttagcgacccttcaaagactcaa |
114 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||||||||||| |
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| T |
8403911 |
tagtagctatttatgaaaattgaactcggcgacccttcaaagactcaa |
8403864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 12106103 - 12106056
Alignment:
| Q |
67 |
tagtagctatttatgaaagtcgaacttagcgacccttcaaagactcaa |
114 |
Q |
| |
|
||||||||||||| |||||||||||| |||| ||||||||||||||| |
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| T |
12106103 |
tagtagctatttacgaaagtcgaactcggcgatccttcaaagactcaa |
12106056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 21361352 - 21361305
Alignment:
| Q |
67 |
tagtagctatttatgaaagtcgaacttagcgacccttcaaagactcaa |
114 |
Q |
| |
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||||||||||||| |||||||||||| |||| ||||||||||||||| |
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| T |
21361352 |
tagtagctatttacaaaagtcgaacttggcgatccttcaaagactcaa |
21361305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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