View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19320_high_21 (Length: 243)
Name: NF19320_high_21
Description: NF19320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19320_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 27375749 - 27375650
Alignment:
| Q |
19 |
catctaacattgagatcattgaactcagaacctgatctttgtctttaaactgcataagatccaaactacattacaaatcatgtagctttcattatcctac |
118 |
Q |
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| T |
27375749 |
catctaacattgagatcattgaactcagaacctgatctttgtctttaaactgcataagatccaaactacattacaaatcatgtagctttcattatcctac |
27375650 |
T |
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Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 27375652 - 27375559
Alignment:
| Q |
150 |
tactcaccaatcaagggcacaaaaatgggaattcatgcgaatcattatgattacatgaataattaaaagaacaattcgccgttgtgttgggcac |
243 |
Q |
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| T |
27375652 |
tactcaccaatcaagggcacaaaaatgggaattcatgcgaatcattatgattacatgaataattaaaagaacaattcgccgttgtgttgggcac |
27375559 |
T |
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