View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19320_high_8 (Length: 440)
Name: NF19320_high_8
Description: NF19320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19320_high_8 |
 | |
|
| [»] scaffold0238 (1 HSPs) |
| | |
|
| [»] scaffold0292 (1 HSPs) |
| | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
| [»] scaffold0490 (1 HSPs) |
| | |
|
| [»] scaffold0125 (2 HSPs) |
| | |
|
| [»] scaffold0281 (1 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
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| [»] scaffold0363 (1 HSPs) |
| | |
|
| [»] scaffold0063 (1 HSPs) |
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| [»] scaffold0021 (1 HSPs) |
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|
Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 49 - 434
Target Start/End: Complemental strand, 4207573 - 4207188
Alignment:
| Q |
49 |
caactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggtt |
148 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4207573 |
caactagaaatggtacctttggtcattatgctcgcatttttgtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggtt |
4207474 |
T |
|
| Q |
149 |
tgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatccg |
248 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4207473 |
tgcgttcatggtggagatacaatatgaacgtaggtctttgttttgccatcattgttattccattggacataacatcactacttgtcgatgtttaaatccg |
4207374 |
T |
|
| Q |
249 |
caagccgccaaagagaaagtggatcgtgggaaacaaccggccaaagaaaatgttggtgtgccccctaactttggtaggggtgcttctacttcggccttgg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4207373 |
caagccgccaaagagaaagtggatcgtgggaaacaaccggccaaagaaaatgttggtgcgccccctaactttggtgggggtgcttctacttcggccttgg |
4207274 |
T |
|
| Q |
349 |
caggtactgagtcatggattcctatttcttccacagttaccaccactaccaggaccacgctcccagcttctcagacagcacatgtt |
434 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||||||||| |||||||| |
|
|
| T |
4207273 |
gaggtactgagtcatgcattcctatttcttccacaattaccaccactaccaggacgacggtcccaacttctcagacaacacatgtt |
4207188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4207549 - 4207602
Alignment:
| Q |
1 |
tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaact |
53 |
Q |
| |
|
||||||||||||| ||||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
4207549 |
tgaccaaaggtaccatttctagttgacccatcgatatcaataggtgttccaact |
4207602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 14411697 - 14411743
Alignment:
| Q |
55 |
gaaatcgtacctttggtcattatgctcgcattttagtggacattgat |
101 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
14411697 |
gaaatcgtacctttggacattatgcaagaattttagtggacattgat |
14411743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 21591520 - 21591566
Alignment:
| Q |
55 |
gaaatcgtacctttggtcattatgctcgcattttagtggacattgat |
101 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
21591520 |
gaaatcgtacctttggacattatgcaagaattttagtggacattgat |
21591566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 48 - 430
Target Start/End: Original strand, 30730798 - 30731180
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
30730798 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggagattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgacgagt |
30730897 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
|||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30730898 |
ttgcgttcatggtggagatacaatatgaacggaggcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
30730997 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaaccggccaaagaaaatgttggtgtgccccctaactttggtaggggtgcttctacttcggccttg |
347 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| || |||| |
|
|
| T |
30730998 |
gcaagctgccaaagagaaagtggatcgttggaaacaaccggccaaagaaaatgttggtgcacaccctaactttggtgggggtgcttctactttggacttg |
30731097 |
T |
|
| Q |
348 |
gcaggtactgagtcatggattcctatttcttccacagttaccaccactaccaggaccacgctcccagcttctcagacagcaca |
430 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||| | || | ||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
30731098 |
ggaggtactgagtcattgattcctatttcttccacagtttctactaataccaggttgacggtcccagcttctcagacaacaca |
30731180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 48 - 297
Target Start/End: Complemental strand, 13644457 - 13644208
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
13644457 |
ccaactagaaatcgttcctttggtcattatgctcgcattctagtggacattgatttatctaagaaagcatatgatgaggtccttgtggaacgtgatggtt |
13644358 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
||||||||||||||||| |||||||||| | | ||||||||||||||||||||||| |||||||| ||||| ||||| |||||| ||||||||||||| |
|
|
| T |
13644357 |
ttgcgttcatggtggaggtacaatatgaacggagacctttgttttgccatcattgttactccattgggcataatatcaccacttgtagatggttaaatcc |
13644258 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaaccggccaaagaaa |
297 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
13644257 |
gcaagcttccaaagagaaaatggatcgtgggaaacaatcggccaaagaaa |
13644208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 48 - 316
Target Start/End: Original strand, 35340226 - 35340494
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
35340226 |
ccaactagaaatcgtatctttggtcattatgctcgcattttggtggacattgacttatcgaagaaagcatatgatgaggttcttgtggaacgtgacggtt |
35340325 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
|||||||||||||||| | |||||| || | | ||||||||||||||||| || || |||||||| |||||||||||||||||| ||||| ||||||| |
|
|
| T |
35340326 |
ttgcgttcatggtggaaatacaatacgagcggagacctttgttttgccatcaatgctactccattggtcataacatcactacttgtagatggataaatcc |
35340425 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaaccggccaaagaaaatgttggtgtgccccctaa |
316 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| | |||||| ||||| || ||||||||| |
|
|
| T |
35340426 |
gcaagccgccaaagagaaggtgaatcgtgggaaacaaccagtaaaagaacctgttgttgcgccccctaa |
35340494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 48 - 297
Target Start/End: Original strand, 17939395 - 17939644
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
17939395 |
ccaactagaaatcgttcctttggtcattatgctcgcattctagtggacattgatttatctaagaaagcatatgatgaggtccttgtggaacgtgatggtt |
17939494 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
|| |||||||||||||| |||||||||| | | ||||||||||||||||||||||| |||||||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
17939495 |
ttccgttcatggtggaggtacaatatgaacggagacctttgttttgccatcattgttactccattggacataatatcaccacttgtagatggttaaatct |
17939594 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaaccggccaaagaaa |
297 |
Q |
| |
|
|||||| |||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
17939595 |
gcaagctgccaaagagaaaatggatcgtggaaaacaaccggccaaagaaa |
17939644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 48 - 297
Target Start/End: Complemental strand, 15443085 - 15442836
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
15443085 |
ccaactagaaatcgctcctttggtcattatgctcgcattctagtggacattgatttatctaagaaagcatatgatgaggtccttgtggaacgtgatggtt |
15442986 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
||||||||||||||||| |||||||||| | | ||||||||||||||||||||||| | |||||| ||||| ||||| |||||| ||| ||||||||| |
|
|
| T |
15442985 |
ttgcgttcatggtggaggtacaatatgaatggagacctttgttttgccatcattgttactacattgggcataatatcaccacttgtagattgttaaatcc |
15442886 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaaccggccaaagaaa |
297 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15442885 |
gcaagctgccaaagagaaaatggatcgtgggaaacaaccggccaaagaaa |
15442836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 48 - 285
Target Start/End: Original strand, 7188405 - 7188642
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | |
|
|
| T |
7188405 |
ccaactagaaatcgtacttttggtcattatgctcgcattttggtggacattgatttatcgaagaaagcatatgatgagattcttgttgaacgcgatggtt |
7188504 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
|||||||| ||||||| | |||||||| | | ||||||||||||||||||||||| |||||||| ||||| |||| |||||| |||||||||||| |
|
|
| T |
7188505 |
ttgcgttcctggtggaaatccaatatgagcggaaacctttgttttgccatcattgttactccattggtcataatatcaatacttgcaaatggttaaatcc |
7188604 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaac |
285 |
Q |
| |
|
|||||| ||||| || |||| | |||| |||||||||| |
|
|
| T |
7188605 |
gcaagctgccaaggataaagagaatcgagggaaacaac |
7188642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 48 - 285
Target Start/End: Complemental strand, 39915328 - 39915091
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | |
|
|
| T |
39915328 |
ccaactagaaattgtacttttggtcattatgctcgcattttggtagacattgatttatcgaagaaagcatatgatgagattcttgttgaacgcgatggtt |
39915229 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
|||||||||||||||| |||||||| | | ||| ||||||||||||||||||| |||||||| ||||| |||| |||||| |||||||||||| |
|
|
| T |
39915228 |
ttgcgttcatggtggaagtccaatatgagcggagacctctgttttgccatcattgttactccattggtcataatatcaatacttgcaaatggttaaatcc |
39915129 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaac |
285 |
Q |
| |
|
|||||| |||| || |||| | |||| |||||||||| |
|
|
| T |
39915128 |
acaagcctccaaggaaaaagagaatcgagggaaacaac |
39915091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 325 - 430
Target Start/End: Complemental strand, 11486425 - 11486326
Alignment:
| Q |
325 |
ggggtgcttctacttcggccttggcaggtactgagtcatggattcctatttcttccacagttaccaccactaccaggaccacgctcccagcttctcagac |
424 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
11486425 |
ggggtgcttctacttcggccttgggaggtactgagtcatggatt------tcttccacagttaccaccactaccaggacgacggtcccagcttctcagac |
11486332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 6e-81; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 48 - 316
Target Start/End: Original strand, 12434339 - 12434606
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
12434339 |
ccaactagaaatcgtttctttggtcattatgctcgcattttagtggacatcgatttatctaagaaagcatatgatgaggtccttgtggaacgtgatggtt |
12434438 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
|||||||||| |||||| |||||||||| | | |||||||||| |||||||||||| |||||||| ||||| ||||| |||||| ||||||||||||| |
|
|
| T |
12434439 |
ttgcgttcat-gtggaggtacaatatgaacggagacctttgtttttccatcattgttactccattgggcataatatcaccacttgtagatggttaaatcc |
12434537 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaaccggccaaagaaaatgttggtgtgccccctaa |
316 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||| ||||||||| ||||| | ||||||||| |
|
|
| T |
12434538 |
gcaagctaccaaagagaaagtggatcatgggaaacaaccgaccaaagaaactgttgaggcgccccctaa |
12434606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 48 - 267
Target Start/End: Original strand, 33312719 - 33312938
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
33312719 |
ccaactagaaatcgtacctttggtcattatgctcgcattttggtggacattgacttatcgaagaaagcatatgatgaggttcttgtggaacgtgatggtt |
33312818 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
|||||||||||||||| | |||||| || | | |||||||||||||||||||| || |||||||| |||||||||||||||||| ||||| ||||||| |
|
|
| T |
33312819 |
ttgcgttcatggtggaaatacaatacgagcggagacctttgttttgccatcattgctactccattggtcataacatcactacttgtagatggataaatcc |
33312918 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaag |
267 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33312919 |
gcaagccgccaaagagaaag |
33312938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 48 - 286
Target Start/End: Complemental strand, 18308333 - 18308095
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
18308333 |
ccaactagaaatcgtacctttggtcattatgcttgcattttggtggacattgacttatcgaagaaagcatatgatgaggttcttgtggaacgtgatggtt |
18308234 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
|||||||||||||||| | |||||| || | | |||||||||||||||||||| || |||||||| |||||||||||||||||| ||| | ||||||| |
|
|
| T |
18308233 |
ttgcgttcatggtggaaatacaatacgagcggagacctttgttttgccatcattgctactccattggtcataacatcactacttgtagatagataaatcc |
18308134 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaacc |
286 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
18308133 |
gcaagccgtcaaagagaaggtgaatcgtgggaaacaacc |
18308095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 48 - 285
Target Start/End: Complemental strand, 3548424 - 3548186
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | |
|
|
| T |
3548424 |
ccaactagaaatcgtacttttggtcattatgctcgcattttggtggacattgatttatcgaagaaagcatatgatgagattcttgttgaacgcgatggtt |
3548325 |
T |
|
| Q |
148 |
ttgcgttcat-ggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatc |
246 |
Q |
| |
|
|||||||||| |||||| | |||||||| | | ||| | ||||||||||||||||| |||||||| ||||| |||| |||||| ||||||||||| |
|
|
| T |
3548324 |
ttgcgttcatgggtggaaatccaatatgagtggagacctctattttgccatcattgttactccattggtcataatatcaatacttgcaaatggttaaatc |
3548225 |
T |
|
| Q |
247 |
cgcaagccgccaaagagaaagtggatcgtgggaaacaac |
285 |
Q |
| |
|
||||||| |||| || |||| | |||| |||||||||| |
|
|
| T |
3548224 |
tgcaagccaccaaggataaagagaatcgagggaaacaac |
3548186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 66 - 404
Target Start/End: Original strand, 21252412 - 21252756
Alignment:
| Q |
66 |
tttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggtttgcgttcatggtggaga |
165 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| | |||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||||||| | |
|
|
| T |
21252412 |
tttggtcactatgctcgcatcctagtggacattgatctttcgaagaaggcatacgatgaggttcttgtcgaacgtgatggttttgcattcatggtggaaa |
21252511 |
T |
|
| Q |
166 |
cacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatccgcaagccgccaaagagaa |
265 |
Q |
| |
|
|||||||||| | | ||| || ||||| ||||| | ||| || ||||||||||||||||| |||||||||||| | |||||||||| || || ||||| |
|
|
| T |
21252512 |
tacaatatgaacgaaggccattattttgtcatcactattactctattggacataacatcaccacttgtcgatggctgaatccgcaagtagcaaaggagaa |
21252611 |
T |
|
| Q |
266 |
agtggatcgtgggaaacaaccggccaaagaaaatgttggtgtgccccct------aactttggtaggggtgcttctacttcggccttggcaggtactgag |
359 |
Q |
| |
|
||||||||||||||| ||||||| || || |||| ||| ||||| | || ||| ||||||| |||||||||||||||| |||| | | |
|
|
| T |
21252612 |
agtggatcgtgggaagcaaccggtcagggatgttgttagtgcgccccatcaacaacacaagggtgggggtgcctctacttcggccttgggaggtgcagca |
21252711 |
T |
|
| Q |
360 |
tcatggattcctatttcttccacagttaccaccactaccaggacc |
404 |
Q |
| |
|
|| |||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
21252712 |
tcgtggattcctattccgtccacagttaccaccactaccaggacc |
21252756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 50 - 285
Target Start/End: Complemental strand, 16758 - 16524
Alignment:
| Q |
50 |
aactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggttt |
149 |
Q |
| |
|
||||| |||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| |
|
|
| T |
16758 |
aactaaaaatcgtatttttggtcattatgcttgcattttggtggacattgatttatcgaagaaagcatatgatgagattcttgttgaatgcgatggtttt |
16659 |
T |
|
| Q |
150 |
gcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatccgc |
249 |
Q |
| |
|
||||| |||||||| | ||||||| | ||| ||||||||||||||||||| |||||||| ||||| | || |||||| |||||||||||||| |
|
|
| T |
16658 |
gcgttaatggtggaaatccaatatg-ggggggacctctgttttgccatcattgttagtccattggtcataatagcaatacttgcaaatggttaaatccgc |
16560 |
T |
|
| Q |
250 |
aagccgccaaagagaaagtggatcgtgggaaacaac |
285 |
Q |
| |
|
|||||||||| || |||| | |||| |||||||||| |
|
|
| T |
16559 |
aagccgccaaggataaagagaatcgagggaaacaac |
16524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 13734826 - 13734872
Alignment:
| Q |
55 |
gaaatcgtacctttggtcattatgctcgcattttagtggacattgat |
101 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
13734826 |
gaaatcgtacctttggacattatgcaagaattttagtggacattgat |
13734872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 48 - 284
Target Start/End: Complemental strand, 1479 - 1243
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | |
|
|
| T |
1479 |
ccaactagaaatcgtacttttggtcattatgctcgcattttggtggacattgatttatcgaagaaagcatatgatgagattcttgttgaacgcgatggct |
1380 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
||||||||||| |||| | |||||||| | | ||| ||||||||||||||||||| |||||||| ||||| |||| ||||| |||||||||||| |
|
|
| T |
1379 |
ttgcgttcatgatggaaatccaatatgagtggagacctctgttttgccatcattgttactccattggtcataatatcaatacttacaaatggttaaatcc |
1280 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaa |
284 |
Q |
| |
|
|||||||||||| || |||| | |||| ||||||||| |
|
|
| T |
1279 |
gcaagccgccaaggataaagagaatcgagggaaacaa |
1243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 48 - 316
Target Start/End: Complemental strand, 3582236 - 3581968
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |
|
|
| T |
3582236 |
ccaactagaaatcgtacttttggtcattatgcttgcattttggtggacattgatttatcgaagaaagcatatgatgagattcttgttgaaaacgatggtt |
3582137 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
|||||||||||||||| | |||||||| | | ||| ||||||||||||||||||| |||||||| ||||| |||| |||||| |||||||||||| |
|
|
| T |
3582136 |
ttgcgttcatggtggaaatccaatatgagcggagacctctgttttgccatcattgttactccattggtcataatatcaatacttgaaaatggttaaatcc |
3582037 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaaccggccaaagaaaatgttggtgtgccccctaa |
316 |
Q |
| |
|
|||||||||||| || |||| | |||| |||||||||| || ||||| ||||| | || ||||||||| |
|
|
| T |
3582036 |
gcaagccgccaaggataaagagaatcgagggaaacaacaggttaaagataatgtggttgcgccccctaa |
3581968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 48 - 285
Target Start/End: Complemental strand, 20971948 - 20971711
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| | |
|
|
| T |
20971948 |
ccaactagaaatcgtatttttggtcattatgctcgcattttggtggacattgatttatcgaagaaagcatatgatgagattcttgttgaatgcgatggtt |
20971849 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
||||||| |||||||| | |||||||| | | ||| ||||||||||||||||||| |||||||| ||||| |||| |||||| |||||||||||| |
|
|
| T |
20971848 |
ttgcgttaatggtggaaatccaatatgagcggagacctctgttttgccatcattgttactccattggtcataatatcaatacttgcaaatggttaaatcc |
20971749 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaac |
285 |
Q |
| |
|
|||||||||||| || |||| |||| |||||||||| |
|
|
| T |
20971748 |
gcaagccgccaaggataaagaaaatcgagggaaacaac |
20971711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 60 - 292
Target Start/End: Complemental strand, 14679786 - 14679554
Alignment:
| Q |
60 |
cgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggtttgcgttcatgg |
159 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||| |||||| | || |||||||| |||||||||||||| || ||||| ||||||||| | || |||| |
|
|
| T |
14679786 |
cgtacttttggtcactatgctcgcatcctagtggatattgatctttcaaagaaagcttatgatgaggttctggtggaacgcgatgggttttcttttatgg |
14679687 |
T |
|
| Q |
160 |
tggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatccgcaagccgccaa |
259 |
Q |
| |
|
|||| | ||||||||| | | ||| |||||||| |||||||| || || ||||| ||||| | | | |||||| |||||||||||||||| | || |
|
|
| T |
14679686 |
tggaaattcaatatgaacgaaggccattgttttgtcatcattgatactctattgggcataatgttaacaattgtcgctggttaaatccgcaagggacaaa |
14679587 |
T |
|
| Q |
260 |
agagaaagtggatcgtgggaaacaaccggccaa |
292 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
14679586 |
ggagaaattggatcgtgggaaacaaccggccaa |
14679554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3582211 - 3582263
Alignment:
| Q |
1 |
tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaac |
52 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| ||| |||||||||||||||| |
|
|
| T |
3582211 |
tgaccaaaagtacgatttctagttggtccatcaatatcaataggtgttccaac |
3582263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 48 - 306
Target Start/End: Complemental strand, 20942399 - 20942141
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||||||| ||||| |||||||||||||| ||||||||||| || || | |
|
|
| T |
20942399 |
ccaactagaaaccgtacctttgggcattatgctcgcattctagtggacatagatttatccaagaaggcatatgatgaggtccttgttgaacgggacggtt |
20942300 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
| || || |||||||| | || |||||| || |||||||||||| || ||||||||||||||||| ||||| |||| ||||||||| ||| || | || |
|
|
| T |
20942299 |
tcgcatttatggtggaaattcagtatgaacgtcggcctttgttttgtcaccattgttattccattggccataatatcaatacttgtcgttggctacaacc |
20942200 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaaccggccaaagaaaatgttggtg |
306 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
20942199 |
gcaagcagctaaggagaaagtggatcgtgggaaacaaccggccaaggaatttgttggtg |
20942141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 48 - 306
Target Start/End: Complemental strand, 25976602 - 25976344
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||||||| ||||| || ||||||||||| |||||||||| || | | |
|
|
| T |
25976602 |
ccaactagaaaccgtacctttgggcattatgctcgcattctagtggacatagatttatccaagaaggcgtatgatgaggtccttgttgaacaagacagtt |
25976503 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
| ||||| |||||||| | || |||||| || |||||||||||| || |||||||||||||||| ||||| |||| ||||||||| ||| |||| || |
|
|
| T |
25976502 |
tcgcgtttatggtggaaattcagtatgaacgtcggcctttgttttgtcaccattgttattccattgaccataatatcaatacttgtcgttggctaaaacc |
25976403 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaaccggccaaagaaaatgttggtg |
306 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
25976402 |
gcaagcagccaaggagaaagtggatcgtgggaaacaaccggccaaggaatttgttggtg |
25976344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 48 - 285
Target Start/End: Original strand, 3868164 - 3868401
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||| |||| | |
|
|
| T |
3868164 |
ccaactagaaatcgtacttttggtcattatgctcgcattttggtggacactgatttatcgaaaaaagcatatgatgagattcttgttgaacacgatgatt |
3868263 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
|||||||||||||||| | |||||||| | | ||| ||||||||||||||||||| |||||||| ||||| |||| |||||| || ||||||||| |
|
|
| T |
3868264 |
ttgcgttcatggtggaaatccaatatgagcgaagacctctgttttgccatcattgttactccattggtcataatatcaatacttgcaaatagttaaatcc |
3868363 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaac |
285 |
Q |
| |
|
|||||||||||| || |||| | |||| |||||||||| |
|
|
| T |
3868364 |
gcaagccgccaaggataaagagaatcgagggaaacaac |
3868401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 66 - 403
Target Start/End: Original strand, 20381068 - 20381411
Alignment:
| Q |
66 |
tttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggtttgcgttcatggtggaga |
165 |
Q |
| |
|
|||||||| |||||||||||| ||||| |||||||| | |||||||| ||||| |||||||||||| | ||||||||||| ||||| ||||||||||| | |
|
|
| T |
20381068 |
tttggtcactatgctcgcattctagtgtacattgatctttcgaagaaggcatacgatgaggttcttctcgaacgtgatggttttgcattcatggtggaaa |
20381167 |
T |
|
| Q |
166 |
cacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatccgcaagccgccaaagagaa |
265 |
Q |
| |
|
||||| |||| | | ||| || ||||| ||||| ||||| || ||||| ||||||||||| |||| ||||||| |||||||||||| ||||| ||||| |
|
|
| T |
20381168 |
tacaatttgaacgaaggccattattttgtcatcactgttactctattgggcataacatcaccacttatcgatggataaatccgcaagtagccaaggagaa |
20381267 |
T |
|
| Q |
266 |
agtggatcgtgggaaacaaccggccaaagaaaatgttggtgtgccccct------aactttggtaggggtgcttctacttcggccttggcaggtactgag |
359 |
Q |
| |
|
||||||||||||||| |||||| ||| || |||| ||| ||||| | || ||| ||||||| ||| |||||||||||| |||| | | |
|
|
| T |
20381268 |
agtggatcgtgggaaggaaccggtcaaggatgttgttagtgcgccccatcaacaacacaagggtgggggtgcctcttcttcggccttgggaggtgcagca |
20381367 |
T |
|
| Q |
360 |
tcatggattcctatttcttccacagttaccaccactaccaggac |
403 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20381368 |
tcgtggattcctattccttccacagttaccaccactaccaggac |
20381411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3868189 - 3868137
Alignment:
| Q |
1 |
tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaac |
52 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| ||| |||||||||||||||| |
|
|
| T |
3868189 |
tgaccaaaagtacgatttctagttggtccatcaatatcaataggtgttccaac |
3868137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0292 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0292
Description:
Target: scaffold0292; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 48 - 286
Target Start/End: Original strand, 19559 - 19794
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| | ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
19559 |
ccaactagaaatcgtgcatttggtcattatgctagaattttggtggacatggatttatcgaagaaagcatatgatgaggttctagttgaacgtgagacct |
19658 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
||| ||| | ||||| | |||||| ||| | | |||||||||||| |||||||||| |||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
19659 |
ttg--ttc-tagtggaaatacaatacgaacggagacctttgttttgcaatcattgttactccattggacataatatcactacttgtagatggttaaatcc |
19755 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaacc |
286 |
Q |
| |
|
| |||| ||||||||||| || |||||||||||||||| |
|
|
| T |
19756 |
ggaagctgccaaagagaatatgaatcgtgggaaacaacc |
19794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 66 - 404
Target Start/End: Original strand, 38192 - 38536
Alignment:
| Q |
66 |
tttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggtttgcgttcatggtggaga |
165 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||| | |||||||| ||||| |||||||||||||| ||||||||||| ||||| | |||||||| | |
|
|
| T |
38192 |
tttggtcactatgcttgcatcctagtggacattgatctttcgaagaaggcatacgatgaggttcttgtcgaacgtgatggttttgcatacatggtggcaa |
38291 |
T |
|
| Q |
166 |
cacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatccgcaagccgccaaagagaa |
265 |
Q |
| |
|
|||||||||| | | ||| || ||||| ||||| ||||| || ||||| ||||||||||| |||||||||||||| |||||||||| || || ||||| |
|
|
| T |
38292 |
tacaatatgaacgaaggccattattttgtcatcactgttactctattgggcataacatcaccacttgtcgatggttgaatccgcaagtagcaaaggagaa |
38391 |
T |
|
| Q |
266 |
agtggatcgtgggaaacaaccggccaaagaaaatgttggtgtgccccct------aactttggtaggggtgcttctacttcggccttggcaggtactgag |
359 |
Q |
| |
|
||||||||||||||| ||||||| | || |||| ||| ||||| | || ||| ||||||| |||||||||||||||| |||| | | |
|
|
| T |
38392 |
agtggatcgtgggaagcaaccggttagggatgttgttagtgcgccccatcaacaacacaagggtgggggtgcctctacttcggccttgggaggtgcagca |
38491 |
T |
|
| Q |
360 |
tcatggattcctatttcttccacagttaccaccactaccaggacc |
404 |
Q |
| |
|
|| |||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
38492 |
tcgtggattcctattccgtccacagttaccaccactaccaggacc |
38536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 66 - 404
Target Start/End: Complemental strand, 160587 - 160243
Alignment:
| Q |
66 |
tttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggtttgcgttcatggtggaga |
165 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||| | |||||||| ||||| |||||||||||||| ||||||||||| ||||| | |||||||| | |
|
|
| T |
160587 |
tttggtcactatgcttgcatcctagtggacattgatctttcgaagaaggcatacgatgaggttcttgtcgaacgtgatggttttgcatacatggtggcaa |
160488 |
T |
|
| Q |
166 |
cacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatccgcaagccgccaaagagaa |
265 |
Q |
| |
|
|||||||||| | | ||| || ||||| ||||| ||||| || ||||| ||||||||||| |||||||||||||| |||||||||| || || ||||| |
|
|
| T |
160487 |
tacaatatgaacgaaggccattattttgtcatcactgttactctattgggcataacatcaccacttgtcgatggttgaatccgcaagtagcaaaggagaa |
160388 |
T |
|
| Q |
266 |
agtggatcgtgggaaacaaccggccaaagaaaatgttggtgtgccccct------aactttggtaggggtgcttctacttcggccttggcaggtactgag |
359 |
Q |
| |
|
||||||||||||||| ||||||| | || |||| ||| ||||| | || ||| ||||||| |||||||||||||||| |||| | | |
|
|
| T |
160387 |
agtggatcgtgggaagcaaccggttagggatgttgttagtgcgccccatcaacaacacaagggtgggggtgcctctacttcggccttgggaggtgcagca |
160288 |
T |
|
| Q |
360 |
tcatggattcctatttcttccacagttaccaccactaccaggacc |
404 |
Q |
| |
|
|| |||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
160287 |
tcgtggattcctattccgtccacagttaccaccactaccaggacc |
160243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0490 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0490
Description:
Target: scaffold0490; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 50 - 403
Target Start/End: Original strand, 12181 - 12540
Alignment:
| Q |
50 |
aactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggttt |
149 |
Q |
| |
|
|||| |||| ||||| |||||||| ||||||||||| | ||||| |||||| | ||||| ||||| ||||||||||||||||| ||||| ||||| || |
|
|
| T |
12181 |
aactcgaaaccgtacatttggtcactatgctcgcatcctcgtggatattgatctttcgaaaaaagcttatgatgaggttcttgtcgaacgcgatggtttc |
12280 |
T |
|
| Q |
150 |
gcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatccgc |
249 |
Q |
| |
|
|| || |||||||| | ||||||||||| | ||| |||||||| ||||||||||| || ||||| |||||| | | |||||||||||| |||||| || |
|
|
| T |
12281 |
gcatttatggtggaaattcaatatgaaagaaggccattgttttgtcatcattgttactctattgggcataacgttaacacttgtcgatggataaatctgc |
12380 |
T |
|
| Q |
250 |
aagccgccaaagagaaagtggatcgtgggaaacaaccggccaaagaaaatgttggtgtgccccct------aactttggtaggggtgcttctacttcggc |
343 |
Q |
| |
|
||| || || |||||| |||| |||||||||||||||||||| || | |||||| | | ||| | || |||| ||||||||||||||||| | |
|
|
| T |
12381 |
aagtggcaaaggagaaattggaacgtgggaaacaaccggccaaggagattgttggagcggcccatcagcaacacaatggtgggggtgcttctacttcgac |
12480 |
T |
|
| Q |
344 |
cttggcaggtactgagtcatggattcctatttcttccacagttaccaccactaccaggac |
403 |
Q |
| |
|
|||| |||| | | || ||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
12481 |
cttgcaaggtgcagcctcgtggattcctataccctccacagttaccaccactacaaggac |
12540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 48 - 292
Target Start/End: Complemental strand, 40708 - 40464
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
|||||| |||| ||||| |||||||| ||||||||||| ||||||| |||||| | | ||||||||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
40708 |
ccaactcgaaaccgtacttttggtcactatgctcgcatcctagtggatattgatcttttgaagaaagcttatgatgaggttcttgtcgaacacgatgggt |
40609 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
|||| || |||||||| | ||||||||| | | ||| ||||||| |||||||| || || ||||| |||||| | | |||||||||||| ||||||| |
|
|
| T |
40608 |
ttgcatttatggtggaaattcaatatgaacgaaggccactgttttgtcatcattgctactctattgggcataacgttaacacttgtcgatggctaaatcc |
40509 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaaccggccaa |
292 |
Q |
| |
|
||||| | || |||||| ||||||||||||||||||||||||| |
|
|
| T |
40508 |
gcaagtgacaaaggagaaattggatcgtgggaaacaaccggccaa |
40464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 48 - 306
Target Start/End: Complemental strand, 31397 - 31139
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
|||||| |||| |||| |||||||| ||||||||||| ||||||| |||||| | ||||||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
31397 |
ccaactcgaaaccgtaattttggtcactatgctcgcatcctagtggatattgatctttcgaagaaagcttatgatgaggttcttgtcgaacgcgatgggt |
31298 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
|||| || |||||||| | ||||||||| | | ||| |||||||| |||||||| || | ||||| |||||| | | |||||||||||| | ||||| |
|
|
| T |
31297 |
ttgcatttatggtggaaattcaatatgaacgaaggccattgttttgtcatcattgctactatattgggcataacgttaacacttgtcgatggcttaatcc |
31198 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaaccggccaaagaaaatgttggtg |
306 |
Q |
| |
|
|||| | || |||||| ||||||||||||||||||||||||| || | |||||||| |
|
|
| T |
31197 |
acaagtgacaaaggagaaattggatcgtgggaaacaaccggccaaggagagtgttggtg |
31139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 48 - 292
Target Start/End: Original strand, 5765 - 6009
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||| || ||||| ||||||||||||| ||||||||| ||||||||||| ||||| || || | |
|
|
| T |
5765 |
ccaactagaaaccgtacttttgggcattatgctcgcattttggtcgacatagatttatcgaagagagcatatgacgaggttcttgtcgaacgcgagggat |
5864 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatggttaaatcc |
247 |
Q |
| |
|
||| || | ||||||| |||||||||| | ||||| |||||||| |||||||||||||||||||| ||||| || || | ||| ||| || | || |
|
|
| T |
5865 |
atgcatttaaagtggagatacaatatgaacgacgtcctttattttgccaccattgttattccattggacacaacattacgacctatcgttggctacaccc |
5964 |
T |
|
| Q |
248 |
gcaagccgccaaagagaaagtggatcgtgggaaacaaccggccaa |
292 |
Q |
| |
|
| ||| || || |||||||| || || ||||||||||||||||| |
|
|
| T |
5965 |
gttagctgcaaaggagaaagtcgaccgagggaaacaaccggccaa |
6009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 9347 - 9538
Alignment:
| Q |
48 |
ccaactagaaatcgtacctttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttgaacgtgatgggt |
147 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||| || ||||| || ||||||||||| |||||||| || |||||||| || |||||| | || || | |
|
|
| T |
9347 |
ccaaccagaaaccgtatgtttggtcattatgctcgaatcttagttgatattgatttatccaagaaagcttacgatgaggtgctggttgaatgcgagggtt |
9446 |
T |
|
| Q |
148 |
ttgcgttcatggtggagacacaatatgaaagtatgcctttgttttgccatcattgttattccattggacataacatcactacttgtcgatgg |
239 |
Q |
| |
|
| ||||| | |||| || |||||||||| | | |||| | |||||||||||||||||| ||||||||| |||||| || |||| |||||| |
|
|
| T |
9447 |
tcgcgtttaaagtggcgatacaatatgaacggaggcctcttttttgccatcattgttataacattggacacaacatctcttcttgccgatgg |
9538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 7014 - 6968
Alignment:
| Q |
55 |
gaaatcgtacctttggtcattatgctcgcattttagtggacattgat |
101 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
7014 |
gaaatcgtacctttggacattatgcaagaattttagtggacattgat |
6968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 59690 - 59736
Alignment:
| Q |
55 |
gaaatcgtacctttggtcattatgctcgcattttagtggacattgat |
101 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
59690 |
gaaatcgtacctttggacattatgcaagaattttagtggacattgat |
59736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 148101 - 148031
Alignment:
| Q |
66 |
tttggtcattatgctcgcattttagtggacattgatttatcgaagaaagcatatgatgaggttcttgttga |
136 |
Q |
| |
|
|||||||| | |||| | |||||||||||||||||| | || |||| |||||||||||| |||||||||| |
|
|
| T |
148101 |
tttggtcactgtgctaggattttagtggacattgatctttcaaagagagcatatgatgaaattcttgttga |
148031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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