View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19320_low_1 (Length: 605)

Name: NF19320_low_1
Description: NF19320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19320_low_1
NF19320_low_1
[»] chr4 (2 HSPs)
chr4 (135-596)||(11486640-11487089)
chr4 (356-424)||(1930858-1930926)
[»] chr1 (3 HSPs)
chr1 (460-596)||(30730162-30730301)
chr1 (335-440)||(21344362-21344467)
chr1 (335-440)||(21349227-21349332)
[»] chr6 (3 HSPs)
chr6 (346-428)||(17395-17477)
chr6 (346-428)||(3549061-3549142)
chr6 (353-427)||(22377979-22378053)
[»] chr2 (1 HSPs)
chr2 (346-428)||(3867446-3867527)
[»] chr5 (2 HSPs)
chr5 (346-429)||(35339503-35339586)
chr5 (353-424)||(21900322-21900393)
[»] scaffold0238 (1 HSPs)
scaffold0238 (358-428)||(2116-2186)
[»] chr3 (2 HSPs)
chr3 (350-428)||(20972363-20972441)
chr3 (27-62)||(25762635-25762670)
[»] scaffold0093 (1 HSPs)
scaffold0093 (363-427)||(9769-9833)
[»] scaffold0292 (1 HSPs)
scaffold0292 (532-593)||(19301-19362)
[»] scaffold0012 (1 HSPs)
scaffold0012 (387-427)||(61965-62005)


Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 135 - 596
Target Start/End: Complemental strand, 11487089 - 11486640
Alignment:
Q  135 gaacacagtggaatgcaatttggtattgaagctattcatcatcatcaatttgttgtgcagctttgcaatttttggccggtagttgttttcaaaaacgtga 234  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||            |||||||| |||||||    
T  11487089 gaacacagtggaatgcaatttggtgttgaagctattcatcatcatcaatttgttgtgaagctttgcaatttt------------gttttcaacaacgtga 11487002  T
Q  235 ttccaccacaaaggagtcacgtatttcaaggttacaatttcacttcccaccaactgtttgtgaaattgcttgactcttctgtattgc--acgtctttctt 332  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||  |||||| ||||||||  || ||||||||    
T  11487001 ttccaccacaaaggagtcacgtagttcaaggttacaatttcactgcccaccaactgtttgtgaaattgct--actcttatgtattgcgcacatctttctt 11486904  T
Q  333 ttattcactgtgtctggttcttaaaattggggtcgcgcaaccgcgttaacacctttgtgcattacaaaggttgaaccacgcgtgtatcaatactagagct 432  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||  ||| | |||||||||||||||||||||||||||||||||||||||| ||    
T  11486903 ttattcactgtgtctggttcttaaaattggggtcgcacaaccgcgttaatgcctctatgcattacaaaggttgaaccacgcgtgtatcaatactagaact 11486804  T
Q  433 ggtatggtagatcgaaactcaaatatggcttatgcgtgccaatggccatgtgtgtcggaagttgcaccatcttttacggggcattctacagctatggtac 532  Q
    |||||| | ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  11486803 ggtatgatggatcgaaacacaaatatggcttatgcgtgccaatggccgtgtttgtcggaagttgcaccatcttctacggtgcattctgcagctatggtac 11486704  T
Q  533 cacctgtttcagtaccaacaacgacaacagtacctactggttcaacacaaacattgtcctttgc 596  Q
    ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11486703 cacatgtttcagtaccaacaacgacaacagtacctactggttcagcacaaacattgtcctttgc 11486640  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 424
Target Start/End: Complemental strand, 1930926 - 1930858
Alignment:
Q  356 aaattggggtcgcgcaaccgcgttaacacctttgtgcattacaaaggttgaaccacgcgtgtatcaata 424  Q
    |||||| ||||| ||||||||| |||  |||||||||||||||||||||||  || |||||||||||||    
T  1930926 aaattgaggtcgtgcaaccgcgctaatgcctttgtgcattacaaaggttgagtcaagcgtgtatcaata 1930858  T

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Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 460 - 596
Target Start/End: Original strand, 30730162 - 30730301
Alignment:
Q  460 gcttatgcgtgccaatggccatgtgtgtcggaagttgcaccatcttt---tacggggcattctacagctatggtaccacctgtttcagtaccaacaacga 556  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    | ||| ||||| | |||||||||||||||||||| |||||||||||||||    
T  30730162 gcttatgcgtgccaatggccgagtgtgtcggaagttgcaccatcttcagctgcggtgcattttgcagctatggtaccacctgttccagtaccaacaacga 30730261  T
Q  557 caacagtacctactggttcaacacaaacattgtcctttgc 596  Q
    ||||||||||  |||||||| |||||||||||||||||||    
T  30730262 caacagtaccctctggttcagcacaaacattgtcctttgc 30730301  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 21344467 - 21344362
Alignment:
Q  335 attcactgtgtctggttcttaaaattggggtcgcgcaaccgcgttaacacctttgtgcattacaaaggttgaaccacgcgtgtatcaatactagagctgg 434  Q
    |||||||||| | ||||||| || |||||||||||||||||||||||  ||| | | |||||||||||||||||||||||||| ||||||||||| ||||    
T  21344467 attcactgtgaccggttcttcaatttggggtcgcgcaaccgcgttaatgcctctctacattacaaaggttgaaccacgcgtgtgtcaatactagaactgg 21344368  T
Q  435 tatggt 440  Q
    | ||||    
T  21344367 tctggt 21344362  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 21349332 - 21349227
Alignment:
Q  335 attcactgtgtctggttcttaaaattggggtcgcgcaaccgcgttaacacctttgtgcattacaaaggttgaaccacgcgtgtatcaatactagagctgg 434  Q
    |||||||||| | ||||||| || |||||||||||||||||||||||  ||| | | |||||||||||||||||||||||||| ||||||||||| ||||    
T  21349332 attcactgtgaccggttcttcaatttggggtcgcgcaaccgcgttaatgcctctctacattacaaaggttgaaccacgcgtgtgtcaatactagaactgg 21349233  T
Q  435 tatggt 440  Q
    | ||||    
T  21349232 tctggt 21349227  T

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Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 17477 - 17395
Alignment:
Q  346 ctggttcttaaaattggggtcgcgcaaccgcgttaacacctttgtgcattacaaaggttgaaccacgcgtgtatcaatactag 428  Q
    ||||||||||||||||||||||||||||||||||||  |||  ||||||||||||||||||||||| ||||||||||||||||    
T  17477 ctggttcttaaaattggggtcgcgcaaccgcgttaatgcctcggtgcattacaaaggttgaaccacacgtgtatcaatactag 17395  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 3549142 - 3549061
Alignment:
Q  346 ctggttcttaaaattggggtcgcgcaaccgcgttaacacctttgtgcattacaaaggttgaaccacgcgtgtatcaatactag 428  Q
    |||||||||||||||||||||||||| |||||||||  |||  ||||||||||||||||||||||||| ||||||||||||||    
T  3549142 ctggttcttaaaattggggtcgcgca-ccgcgttaatgcctcggtgcattacaaaggttgaaccacgcctgtatcaatactag 3549061  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 353 - 427
Target Start/End: Original strand, 22377979 - 22378053
Alignment:
Q  353 ttaaaattggggtcgcgcaaccgcgttaacacctttgtgcattacaaaggttgaaccacgcgtgtatcaatacta 427  Q
    ||||| ||| ||||||||||||||| | |  |||||||||||||||||||||||  |||||||||||||||||||    
T  22377979 ttaaatttgaggtcgcgcaaccgcgctgatgcctttgtgcattacaaaggttgagtcacgcgtgtatcaatacta 22378053  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 346 - 428
Target Start/End: Original strand, 3867446 - 3867527
Alignment:
Q  346 ctggttcttaaaattggggtcgcgcaaccgcgttaacacctttgtgcattacaaaggttgaaccacgcgtgtatcaatactag 428  Q
    ||||||||||||||||||||| ||||||||||||||  || | ||| ||||||||||||||||||||||||||||| ||||||    
T  3867446 ctggttcttaaaattggggtcacgcaaccgcgttaatgcc-tcgtgtattacaaaggttgaaccacgcgtgtatcactactag 3867527  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 35339503 - 35339586
Alignment:
Q  346 ctggttcttaaaattggggtcgcgcaaccgcgttaacacctttgtgcattacaaaggttgaaccacgcgtgtatcaatactaga 429  Q
    ||||||||| |||||||||||| ||||||| |||||  ||| | |||||||||||||||||||||||  |||||||||||||||    
T  35339503 ctggttcttcaaattggggtcgtgcaaccgtgttaatgcctctatgcattacaaaggttgaaccacgtatgtatcaatactaga 35339586  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 21900393 - 21900322
Alignment:
Q  353 ttaaaattggggtcgcgcaaccgcgttaacacctttgtgcattacaaaggttgaaccacgcgtgtatcaata 424  Q
    ||||||| | ||||| ||||||||| |||  |||||||||||||||||||||||  ||||||||||||||||    
T  21900393 ttaaaatcgaggtcgtgcaaccgcgctaatgcctttgtgcattacaaaggttgagtcacgcgtgtatcaata 21900322  T

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Target: scaffold0238 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 358 - 428
Target Start/End: Complemental strand, 2186 - 2116
Alignment:
Q  358 attggggtcgcgcaaccgcgttaacacctttgtgcattacaaaggttgaaccacgcgtgtatcaatactag 428  Q
    |||||||||| ||||||| |||||  |||  |||||||||||||||||||||| |||||||||||||||||    
T  2186 attggggtcgtgcaaccgtgttaatgcctcggtgcattacaaaggttgaaccatgcgtgtatcaatactag 2116  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 350 - 428
Target Start/End: Complemental strand, 20972441 - 20972363
Alignment:
Q  350 ttcttaaaattggggtcgcgcaaccgcgttaacacctttgtgcattacaaaggttgaaccacgcgtgtatcaatactag 428  Q
    ||||||||||||||||| |||||||||||||    ||  |||||||||||||||| |||||| ||||||||||||||||    
T  20972441 ttcttaaaattggggtcacgcaaccgcgttagtgactcggtgcattacaaaggttaaaccacacgtgtatcaatactag 20972363  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 25762635 - 25762670
Alignment:
Q  27 cttttaaaagaaacccaccactatagacaatactta 62  Q
    |||| |||||||||||||||||||||||||||||||    
T  25762635 ctttcaaaagaaacccaccactatagacaatactta 25762670  T

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Target: scaffold0093 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 9769 - 9833
Alignment:
Q  363 ggtcgcgcaaccgcgttaacacctttgtgcattacaaaggttgaaccacgcgtgtatcaatacta 427  Q
    ||||||||||||||| |||  |  ||||||||||||||||||||  ||||||||||||| |||||    
T  9769 ggtcgcgcaaccgcgctaatgcagttgtgcattacaaaggttgagtcacgcgtgtatcattacta 9833  T

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Target: scaffold0292 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 593
Target Start/End: Original strand, 19301 - 19362
Alignment:
Q  532 ccacctgtttcagtaccaacaacgacaacagtacctactggttcaacacaaacattgtcctt 593  Q
    |||| |||||||| ||||||| |||||||||||| | |||||||| ||| |||| |||||||    
T  19301 ccacttgtttcagcaccaacatcgacaacagtactttctggttcagcaccaacaatgtcctt 19362  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 427
Target Start/End: Complemental strand, 62005 - 61965
Alignment:
Q  387 ttgtgcattacaaaggttgaaccacgcgtgtatcaatacta 427  Q
    ||||||||||||||||||||  ||||||||||||| |||||    
T  62005 ttgtgcattacaaaggttgagtcacgcgtgtatcattacta 61965  T

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