View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19320_low_18 (Length: 255)
Name: NF19320_low_18
Description: NF19320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19320_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 47118411 - 47118313
Alignment:
| Q |
1 |
atgtagattggtgaaaatatggggaccaaaactgcaattaaacctagtttatatgatatgtactatattattgtagttattgaaaaaatatagttatga |
99 |
Q |
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| T |
47118411 |
atgtagattggtgaaaatatggggactaaaactgcaattaagtctaatttatatgatatgtactatattattgttgttattgaaaaaatatagttatga |
47118313 |
T |
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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 47118297 - 47118268
Alignment:
| Q |
115 |
ataatttgaaagtcacaattatctatactt |
144 |
Q |
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| T |
47118297 |
ataatttgaaagtcacaattatctatactt |
47118268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 38216380 - 38216416
Alignment:
| Q |
9 |
tggtgaaaatatggggaccaaaactgcaattaaacct |
45 |
Q |
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| T |
38216380 |
tggtgaaaatagggggaccaaaactgcaattaaacct |
38216416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 14741971 - 14741939
Alignment:
| Q |
9 |
tggtgaaaatatggggaccaaaactgcaattaa |
41 |
Q |
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| T |
14741971 |
tggtgaaaatagggggaccaaaactgcaattaa |
14741939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 44362943 - 44362906
Alignment:
| Q |
9 |
tggtgaaaatatggggaccaaaactgcaattaaaccta |
46 |
Q |
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| T |
44362943 |
tggtgaaaatagggggaccaaaactgcaattaagccta |
44362906 |
T |
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