View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19320_low_21 (Length: 250)

Name: NF19320_low_21
Description: NF19320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19320_low_21
NF19320_low_21
[»] chr4 (20 HSPs)
chr4 (105-248)||(27375282-27375425)
chr4 (56-97)||(25970113-25970154)
chr4 (56-105)||(36450727-36450776)
chr4 (35-86)||(47377577-47377628)
chr4 (56-105)||(30808620-30808669)
chr4 (56-105)||(39429224-39429273)
chr4 (49-97)||(232042-232090)
chr4 (56-104)||(23425207-23425255)
chr4 (56-104)||(25970803-25970851)
chr4 (56-104)||(39652059-39652107)
chr4 (57-104)||(55514355-55514402)
chr4 (31-77)||(31911443-31911489)
chr4 (31-77)||(32450193-32450239)
chr4 (37-91)||(34371475-34371529)
chr4 (56-97)||(39429937-39429978)
chr4 (120-176)||(24704135-24704191)
chr4 (56-104)||(30809505-30809553)
chr4 (56-104)||(45330565-45330613)
chr4 (56-104)||(45331453-45331501)
chr4 (56-104)||(47376852-47376900)
[»] chr7 (18 HSPs)
chr7 (37-102)||(44541689-44541754)
chr7 (37-97)||(24996664-24996724)
chr7 (37-97)||(24995859-24995919)
chr7 (56-104)||(27599211-27599259)
chr7 (56-104)||(27600095-27600143)
chr7 (38-97)||(42607088-42607147)
chr7 (62-104)||(9122650-9122692)
chr7 (43-97)||(42607799-42607853)
chr7 (56-97)||(29060739-29060780)
chr7 (56-107)||(32871140-32871191)
chr7 (38-97)||(40257784-40257843)
chr7 (56-97)||(40320410-40320451)
chr7 (111-152)||(47343183-47343224)
chr7 (56-104)||(5063323-5063371)
chr7 (61-97)||(6730162-6730198)
chr7 (57-97)||(36844619-36844659)
chr7 (56-104)||(43846916-43846963)
chr7 (68-104)||(46759274-46759310)
[»] chr1 (21 HSPs)
chr1 (37-104)||(36272528-36272595)
chr1 (50-97)||(4640535-4640582)
chr1 (37-104)||(6768099-6768166)
chr1 (50-97)||(4641756-4641803)
chr1 (49-104)||(29334214-29334269)
chr1 (49-104)||(43316357-43316412)
chr1 (49-104)||(50950145-50950200)
chr1 (55-97)||(30466189-30466231)
chr1 (49-106)||(38932121-38932178)
chr1 (56-97)||(47334206-47334247)
chr1 (56-104)||(11031431-11031479)
chr1 (56-104)||(11032219-11032267)
chr1 (56-104)||(47334900-47334948)
chr1 (141-184)||(4865822-4865865)
chr1 (57-104)||(11426853-11426900)
chr1 (56-97)||(38931321-38931362)
chr1 (56-97)||(41884229-41884270)
chr1 (56-97)||(48835097-48835138)
chr1 (57-105)||(294624-294672)
chr1 (37-105)||(7464051-7464119)
chr1 (57-105)||(36153897-36153945)
[»] chr5 (14 HSPs)
chr5 (38-97)||(4789527-4789586)
chr5 (38-97)||(6804898-6804957)
chr5 (56-105)||(1970514-1970563)
chr5 (57-104)||(9142047-9142094)
chr5 (37-105)||(473025-473093)
chr5 (56-104)||(4607136-4607184)
chr5 (57-97)||(26712389-26712429)
chr5 (57-97)||(26982127-26982167)
chr5 (57-104)||(4555390-4555437)
chr5 (37-103)||(6804814-6804880)
chr5 (117-155)||(29667894-29667932)
chr5 (56-104)||(9924124-9924171)
chr5 (56-104)||(32943517-32943565)
chr5 (37-97)||(35262459-35262519)
[»] chr2 (19 HSPs)
chr2 (49-104)||(7868134-7868189)
chr2 (122-179)||(39635308-39635365)
chr2 (49-97)||(36390964-36391012)
chr2 (57-104)||(5005462-5005509)
chr2 (42-104)||(23462405-23462467)
chr2 (56-105)||(37546564-37546613)
chr2 (56-104)||(20991287-20991335)
chr2 (57-97)||(23876064-23876104)
chr2 (37-97)||(34617660-34617720)
chr2 (49-97)||(36391665-36391713)
chr2 (37-105)||(41768724-41768792)
chr2 (132-175)||(6973127-6973170)
chr2 (57-104)||(7867170-7867217)
chr2 (38-97)||(15602802-15602861)
chr2 (38-79)||(42370932-42370973)
chr2 (56-104)||(4769052-4769100)
chr2 (57-97)||(6085702-6085742)
chr2 (57-105)||(36476747-36476795)
chr2 (56-104)||(37545676-37545724)
[»] chr3 (16 HSPs)
chr3 (58-104)||(44022089-44022135)
chr3 (56-105)||(43768025-43768074)
chr3 (37-104)||(52399009-52399076)
chr3 (56-97)||(49161808-49161849)
chr3 (49-97)||(8653713-8653761)
chr3 (49-105)||(44406952-44407008)
chr3 (117-184)||(23653216-23653283)
chr3 (38-97)||(33968188-33968247)
chr3 (54-97)||(45501292-45501335)
chr3 (49-104)||(51420861-51420916)
chr3 (56-97)||(31598794-31598835)
chr3 (56-97)||(33455781-33455822)
chr3 (132-185)||(49189496-49189549)
chr3 (56-97)||(51421675-51421716)
chr3 (49-97)||(8652817-8652865)
chr3 (57-97)||(49160994-49161034)
[»] chr8 (7 HSPs)
chr8 (56-105)||(42345393-42345442)
chr8 (56-104)||(7054090-7054138)
chr8 (43-97)||(35943083-35943137)
chr8 (56-97)||(35840530-35840571)
chr8 (56-104)||(13935053-13935101)
chr8 (37-97)||(34364661-34364721)
chr8 (56-104)||(43433811-43433859)
[»] chr6 (5 HSPs)
chr6 (35-104)||(24125972-24126041)
chr6 (56-97)||(29290130-29290171)
chr6 (143-207)||(6329839-6329902)
chr6 (21-97)||(8383983-8384059)
chr6 (56-105)||(24126718-24126767)
[»] scaffold0129 (1 HSPs)
scaffold0129 (54-106)||(43216-43268)
[»] scaffold2003 (1 HSPs)
scaffold2003 (49-104)||(524-579)
[»] scaffold0150 (1 HSPs)
scaffold0150 (62-105)||(14011-14054)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 105 - 248
Target Start/End: Original strand, 27375282 - 27375425
Alignment:
Q  105 acctacgtcactgtgaacttaactcgattggtaaaaacattgcataatatacgtaggggttggagttcgaactccgaacattctatttttaccacattta 204  Q
    ||||||||||| ||||| |||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27375282 acctacgtcaccgtgaatttaactcgattgataagaacattgtataatatacgtaggggttggagttcgaactccgaacattctatttttaccacattta 27375381  T
Q  205 aaacgtgcgaacttcaattttgagatgattgagacttcagatta 248  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  27375382 aaacgtgcgaacttcagttttgagatgattgagacttcagatta 27375425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 25970154 - 25970113
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  25970154 actttcccatggtgggaaacaactcccctttcccatgctaaa 25970113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 36450776 - 36450727
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| ||||||    
T  36450776 actttcccatggtggaaaacaactcccctttcccatgctaaataccacca 36450727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 47377577 - 47377628
Alignment:
Q  35 taaatctgatggccaaaaattactttcccatggtgggaaacaactccccttt 86  Q
    ||||||| |||||  ||||| |||||||||||||||||||||||||||||||    
T  47377577 taaatctaatggctgaaaataactttcccatggtgggaaacaactccccttt 47377628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 30808669 - 30808620
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    ||||||||||||||||||||||||| ||||| ||||  ||||||||||||    
T  30808669 actttcccatggtgggaaacaactctcctttcccattttaaatgccacca 30808620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 39429273 - 39429224
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    ||||||||||||| ||||||||||| || || ||||||||||||||||||    
T  39429273 actttcccatggtaggaaacaactctccattcccatgctaaatgccacca 39429224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 232042 - 232090
Alignment:
Q  49 aaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||| |||||||||||||||||||||||||| |||||| |||| |||||    
T  232042 aaaatttactttcccatggtgggaaacaacttccctttcccatactaaa 232090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 23425207 - 23425255
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||||||||||||||||||||| || || |||| ||||||||||||    
T  23425207 actttcccatggtgggaaacaactctccattcccatactaaatgccacc 23425255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 25970803 - 25970851
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||| |||||||||||||||||||| ||| |||| ||||||||||||    
T  25970803 actttctcatggtgggaaacaactcccttttcccatactaaatgccacc 25970851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 39652059 - 39652107
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||||||||||| |||||||||| || || |||||||||||||||||    
T  39652059 actttcccatggtgagaaacaactctccattcccatgctaaatgccacc 39652107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 55514355 - 55514402
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||||||||||||||||||||  ||||| |||||||||||| ||||    
T  55514355 ctttcccatggtgggaaacaactttcctttcccatgctaaatggcacc 55514402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 31911443 - 31911489
Alignment:
Q  31 ctcctaaatctgatggccaaaaattactttcccatggtgggaaacaa 77  Q
    ||||| |||||||||| |||||| |||||| ||||||||||||||||    
T  31911443 ctccttaatctgatggtcaaaaaatacttttccatggtgggaaacaa 31911489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 32450193 - 32450239
Alignment:
Q  31 ctcctaaatctgatggccaaaaattactttcccatggtgggaaacaa 77  Q
    ||||| |||||||||| |||||| |||||| ||||||||||||||||    
T  32450193 ctccttaatctgatggtcaaaaaatacttttccatggtgggaaacaa 32450239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 34371529 - 34371475
Alignment:
Q  37 aatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccat 91  Q
    ||||| |||| ||||||  |||||||||||||||||||||| |||||||| ||||    
T  34371529 aatctaatggacaaaaaaaactttcccatggtgggaaacaattcccctttcccat 34371475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 39429937 - 39429978
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||||||||||||||||||||||| || || ||||||||||    
T  39429937 actttcccatggtgggaaacaactctccattcccatgctaaa 39429978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 24704135 - 24704191
Alignment:
Q  120 aacttaactcgattggtaaaaacattgcataatatacgtaggggttggagttcgaac 176  Q
    |||||||||| |||||||  ||||||||||||| || | |||||| |||||||||||    
T  24704135 aacttaactcaattggtaggaacattgcataatttatgcaggggtcggagttcgaac 24704191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 30809505 - 30809553
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||| |||||||| ||||||||||||||| ||||  |||||||||||    
T  30809505 actttctcatggtggaaaacaactcccctttcccattttaaatgccacc 30809553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 45330613 - 45330565
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||| ||||||||||||||||||||||||| ||||  ||||| |||||    
T  45330613 acttttccatggtgggaaacaactcccctttcccattttaaattccacc 45330565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 45331453 - 45331501
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||| ||||||||||||||||||||||||  |||  |||||||||||    
T  45331453 actttctcatggtgggaaacaactcccctttctcattttaaatgccacc 45331501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 47376900 - 47376852
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||||||| ||||||||||||||||||| |||   |||||||||||    
T  47376900 actttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 47376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 44541689 - 44541754
Alignment:
Q  37 aatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgcca 102  Q
    ||||||||||||||||| |||||||||||||| |||||||| ||| |||| |||||||||||||||    
T  44541689 aatctgatggccaaaaaatactttcccatggtcggaaacaattccactttcccatgctaaatgcca 44541754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 24996664 - 24996724
Alignment:
Q  37 aatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  24996664 aatctaatggtcaaaaaatactttcccatggtgggaaacaactcccctttcccatgctaaa 24996724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 24995919 - 24995859
Alignment:
Q  37 aatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||| |||| |||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  24995919 aatctaatggtcaaaaaatactttcccatggtgggaaacaactcccctttcccattctaaa 24995859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 27599259 - 27599211
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  27599259 actttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 27600095 - 27600143
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  27600095 actttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27600143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 42607147 - 42607088
Alignment:
Q  38 atctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||| |||| ||||||  |||||||||||||||||||||| |||||||| ||||||||||    
T  42607147 atctaatggacaaaaacaactttcccatggtgggaaacaattcccctttcccatgctaaa 42607088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 9122692 - 9122650
Alignment:
Q  62 ccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  9122692 ccatggtgggaaacaacttccctttcccatgctaaatgccacc 9122650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 42607799 - 42607853
Alignment:
Q  43 atggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||| ||||||| ||||||| ||| |||||||||| |||||||||||||||||||    
T  42607799 atggacaaaaataactttcctatgatgggaaacaattccccttttccatgctaaa 42607853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 29060739 - 29060780
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  29060739 actttcccatggtgggaaacaattcccctttcccatgctaaa 29060780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 32871140 - 32871191
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccaccacc 107  Q
    ||||||| |||||||||||||||||||| || ||||||||||  ||||||||    
T  32871140 actttcctatggtgggaaacaactccccattcccatgctaaaccccaccacc 32871191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 40257784 - 40257843
Alignment:
Q  38 atctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||| |||| ||||||  |||||| |||||||||||||||||||| ||| ||||||||||    
T  40257784 atctaatggacaaaaacaactttctcatggtgggaaacaactcccatttcccatgctaaa 40257843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 40320410 - 40320451
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||    
T  40320410 acttttccatggtgggaaacaactctcctttcccatgctaaa 40320451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 47343183 - 47343224
Alignment:
Q  111 gtcactgtgaacttaactcgattggtaaaaacattgcataat 152  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  47343183 gtcactgtgaacttaactcaattggtaaagacagtgcataat 47343224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 5063371 - 5063323
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||||||||||||||| |||  ||| |||||| |||||||||||||    
T  5063371 actttcccatggtgggaaaaaacatcccatttccaggctaaatgccacc 5063323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 6730162 - 6730198
Alignment:
Q  61 cccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  6730162 cccatggtgggaaacaacttccctttcccatgctaaa 6730198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 36844659 - 36844619
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||| |||||||||||||||||| ||||| ||||||||||    
T  36844659 ctttctcatggtgggaaacaactcacctttcccatgctaaa 36844619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 43846916 - 43846963
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||||||||||||||| ||||||||||| ||| |||||| ||||||    
T  43846916 actttcccatggtgggaaa-aactcccctttcccaggctaaacgccacc 43846963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 46759274 - 46759310
Alignment:
Q  68 tgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  46759274 tgggaaacaactcccctttcccatactaaatgccacc 46759310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 36272528 - 36272595
Alignment:
Q  37 aatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||| |||||||||||| ||||||||||||||||||||||| | ||| || |||||||||||||||||    
T  36272528 aatcagatggccaaaaaatactttcccatggtgggaaacaagttcccattcccatgctaaatgccacc 36272595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 4640582 - 4640535
Alignment:
Q  50 aaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  4640582 aaaattactttcccatggtgggaaacaattcccctttaccatgctaaa 4640535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 6768099 - 6768166
Alignment:
Q  37 aatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||| |||||||||||| |||||||||||||||||||| || | ||| || |||||||||||||||||    
T  6768099 aatcagatggccaaaaaatactttcccatggtgggaaataagttcccattcccatgctaaatgccacc 6768166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 4641756 - 4641803
Alignment:
Q  50 aaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  4641756 aaaattactttcccttggtgggaaacaattcccctttcccatgctaaa 4641803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 29334269 - 29334214
Alignment:
Q  49 aaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||| ||||||||||||||||||||||||||  || || |||||||||||||||||    
T  29334269 aaaatttactttcccatggtgggaaacaactatccattcccatgctaaatgccacc 29334214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 43316412 - 43316357
Alignment:
Q  49 aaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||| ||||||||||||||||||||||||||  || || |||||||||||||||||    
T  43316412 aaaatttactttcccatggtgggaaacaactatccattcccatgctaaatgccacc 43316357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 50950200 - 50950145
Alignment:
Q  49 aaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||| ||||||| ||||||||||||||||||  || ||||||||||||||||||||    
T  50950200 aaaatttacttttccatggtgggaaacaactatccatttccatgctaaatgccacc 50950145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 30466231 - 30466189
Alignment:
Q  55 tactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||||||||||||||||||||||||||| || ||||||||||    
T  30466231 tactttcccatggtgggaaacaactccccattcccatgctaaa 30466189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 38932121 - 38932178
Alignment:
Q  49 aaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccaccac 106  Q
    |||||| ||||||| ||||||| |||||||| || ||| |||||||||||||||||||    
T  38932121 aaaaatgactttcctatggtggaaaacaacttccttttcccatgctaaatgccaccac 38932178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 47334247 - 47334206
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  47334247 actttcccattgtgggaaacaactccccttttccaggctaaa 47334206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 11031479 - 11031431
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||||||||||||||||| | |||||||| ||||| |||||||||||    
T  11031479 actttcccatggtgggaaactattcccctttcccatgttaaatgccacc 11031431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 11032219 - 11032267
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||||||||||||||||| | |||||||| ||||| |||||||||||    
T  11032219 actttcccatggtgggaaactattcccctttcccatgttaaatgccacc 11032267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 47334900 - 47334948
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||| ||||||||||||||||||| ||| |||| ||||||||||||    
T  47334900 actttcctatggtgggaaacaactcccttttcccatactaaatgccacc 47334948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 4865865 - 4865822
Alignment:
Q  141 acattgcataatatacgtaggggttggagttcgaactccgaaca 184  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||    
T  4865865 acattgcataatatatgtaggggtcggagttcgaaccccgaaca 4865822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 11426900 - 11426853
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||||||||||||||||   | ||||||||||||||||||||||||    
T  11426900 ctttcccatggtgggaaactctttcccttttccatgctaaatgccacc 11426853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 38931362 - 38931321
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||||||||||||||||||||| ||||||||  |||||||||    
T  38931362 actttcccatggtgggaaacaattcccctttctcatgctaaa 38931321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 41884229 - 41884270
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||||| |||||||||||||| | |||||||||||||||||    
T  41884229 actttcctatggtgggaaacaatttcccttttccatgctaaa 41884270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 48835097 - 48835138
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||||||||||||| |||||| |||||||| ||||||||||    
T  48835097 actttcccatggtggaaaacaattcccctttcccatgctaaa 48835138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 294672 - 294624
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    |||||||||||||||||| |||||||| || |||| ||||| |||||||    
T  294672 ctttcccatggtgggaaaaaactccccattcccatactaaacgccacca 294624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 7464051 - 7464119
Alignment:
Q  37 aatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    |||||||||| ||||| |   ||||||||||||||||||   | |||||||||||| ||||||||||||    
T  7464051 aatctgatggtcaaaattagttttcccatggtgggaaactctttcccttttccatgttaaatgccacca 7464119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 36153897 - 36153945
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    |||||||||||||||||| |||||||  || ||| ||||||||||||||    
T  36153897 ctttcccatggtgggaaaaaactccctattcccaggctaaatgccacca 36153945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 4789586 - 4789527
Alignment:
Q  38 atctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||| |||| ||| ||| ||||||||||||||||||||||||||||||| ||||||||||    
T  4789586 atctaatggtcaagaataactttcccatggtgggaaacaactcccctttcccatgctaaa 4789527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 6804957 - 6804898
Alignment:
Q  38 atctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||||||| |||||| |||||| |||||||||||||||||||| |||| ||||||||||    
T  6804957 atctgatggtcaaaaagtacttttccatggtgggaaacaactcctctttcccatgctaaa 6804898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 1970514 - 1970563
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    ||||||||||||||||||||||||| || || ||||||||||||||||||    
T  1970514 actttcccatggtgggaaacaactctccattcccatgctaaatgccacca 1970563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 9142094 - 9142047
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||||||||||||||||||| |||||| |||| ||||||||||||    
T  9142094 ctttcccatggtgggaaacaacttccctttcccatactaaatgccacc 9142047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 473025 - 473093
Alignment:
Q  37 aatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    ||||||||||| ||||| |||||| | |||||||||||| ||| |||||| ||||  ||||||||||||    
T  473025 aatctgatggctaaaaaatacttttctatggtgggaaacgacttccctttcccatattaaatgccacca 473093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 4607136 - 4607184
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||| |||||||||||||||||| || || |||||||||||||||||    
T  4607136 actttctcatggtgggaaacaactctccattcccatgctaaatgccacc 4607184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 26712389 - 26712429
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  26712389 ctttcccatggtgggaaacaacttccctttcccatgctaaa 26712429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 26982127 - 26982167
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  26982127 ctttcccatggtgggaaacaacttccctttcccatgctaaa 26982167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 4555390 - 4555437
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||||||||| |||||||||| |||||| |||| ||||||||||||    
T  4555390 ctttcccatggtaggaaacaacttccctttcccatactaaatgccacc 4555437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 6804814 - 6804880
Alignment:
Q  37 aatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccac 103  Q
    ||||| |||| ||||| | |||||||||||||||||||||||| | ||   ||||||||||||||||    
T  6804814 aatctaatggtcaaaattgactttcccatggtgggaaacaacttcactgacccatgctaaatgccac 6804880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 29667932 - 29667894
Alignment:
Q  117 gtgaacttaactcgattggtaaaaacattgcataatata 155  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  29667932 gtgaacttaactcaattggtaaaaacaatgcataatata 29667894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 9924124 - 9924171
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||||||||||||||||||||| ||  | |||||||||||||||||    
T  9924124 actttcccatggtgggaaacaactctcc-atcccatgctaaatgccacc 9924171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 32943565 - 32943517
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||||||||||||||||||| |  ||||| ||||||||||| |||||    
T  32943565 actttcccatggtgggaaacaaatatcctttcccatgctaaatcccacc 32943517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 35262519 - 35262459
Alignment:
Q  37 aatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||| |||| ||||||| ||||||||||||| |||||||| |  ||||| ||||||||||    
T  35262519 aatctaatggtcaaaaataactttcccatggtaggaaacaattatcctttcccatgctaaa 35262459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 7868134 - 7868189
Alignment:
Q  49 aaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  7868134 aaaatttactttcccatggtgggaaacaactcccctttctcatgctaaatcccacc 7868189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 39635308 - 39635365
Alignment:
Q  122 cttaactcgattggtaaaaacattgcataatatacgtaggggttggagttcgaactcc 179  Q
    |||||||| ||||||||||||||||||||||||| || ||||| || |||||||||||    
T  39635308 cttaactcaattggtaaaaacattgcataatatatgttggggtcggggttcgaactcc 39635365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 36391012 - 36390964
Alignment:
Q  49 aaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||| |||||||||||||||||||||||||| |||||| ||||||||||    
T  36391012 aaaatttactttcccatggtgggaaacaacttccctttcccatgctaaa 36390964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 5005509 - 5005462
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||||||| |||||||||| |||||||| |||||||||||||||||    
T  5005509 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 5005462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 23462467 - 23462405
Alignment:
Q  42 gatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||||||||| |||||||||||||| | |||||| | ||| ||||||||||||||| ||||    
T  23462467 gatggccaaaaaatactttcccatggtagaaaacaagttcccatttccatgctaaatgtcacc 23462405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 37546564 - 37546613
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    ||||||||||| ||||||||||||||||||| ||||  ||||||||||||    
T  37546564 actttcccatgatgggaaacaactcccctttcccattttaaatgccacca 37546613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 20991335 - 20991287
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||||||||||| ||||||||| || || |||||||||||||||||    
T  20991335 actttcccatggtggaaaacaactctccattcccatgctaaatgccacc 20991287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 23876064 - 23876104
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  23876064 ctttcccatggtgggaaacaactcccatttcccatgctaaa 23876104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 34617720 - 34617660
Alignment:
Q  37 aatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||| |||| ||||||| |||||||||||||||||||||| |  ||||| ||||||||||    
T  34617720 aatctaatggtcaaaaataactttcccatggtgggaaacaattatcctttcccatgctaaa 34617660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 36391665 - 36391713
Alignment:
Q  49 aaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||| ||||||||||||||||| ||||||||||||||| |||| |||||    
T  36391665 aaaatttactttcccatggtggaaaacaactcccctttcccatactaaa 36391713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 41768724 - 41768792
Alignment:
Q  37 aatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    ||||| |||| ||||| | |||||||||||||||||||||||| | ||   ||||||||||||||||||    
T  41768724 aatctaatggtcaaaattgactttcccatggtgggaaacaacttcactgacccatgctaaatgccacca 41768792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 6973170 - 6973127
Alignment:
Q  132 ttggtaaaaacattgcataatatacgtaggggttggagttcgaa 175  Q
    |||||| ||||||||||||||||||| |||||| ||||||||||    
T  6973170 ttggtataaacattgcataatatacgcaggggtcggagttcgaa 6973127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 7867217 - 7867170
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||||||||| | ||| ||||||||||||||||||||||| |||||    
T  7867217 ctttcccatggtagaaaataactccccttttccatgctaaattccacc 7867170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 15602802 - 15602861
Alignment:
Q  38 atctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||| |||| |||||| || |||||||||||||||||||||| |||||| | ||||||||    
T  15602802 atctaatggtcaaaaaatattttcccatggtgggaaacaacttccctttcctatgctaaa 15602861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 42370932 - 42370973
Alignment:
Q  38 atctgatggccaaaaattactttcccatggtgggaaacaact 79  Q
    |||| |||||||| | ||||||||||||||||||||||||||    
T  42370932 atctaatggccaatatttactttcccatggtgggaaacaact 42370973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 4769052 - 4769100
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||| |||||||||||  | |||||||||||||| |||||||||||    
T  4769052 actttcctatggtgggaaaggattccccttttccatgttaaatgccacc 4769100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 6085702 - 6085742
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||||||||||| ||||||||||| ||||| ||||||||||    
T  6085702 ctttcccatggtaggaaacaactcacctttcccatgctaaa 6085742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 36476747 - 36476795
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    |||||||||| ||||||| ||||||||||||| | ||||||||| ||||    
T  36476747 ctttcccatgatgggaaagaactccccttttctaggctaaatgcaacca 36476795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 37545724 - 37545676
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||||||||||||||||||||| |||||| | ||  |||||||||||    
T  37545724 actttcccatggtgggaaacaacttccctttcctattttaaatgccacc 37545676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 44022089 - 44022135
Alignment:
Q  58 tttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  44022089 tttcccatggtggaaaacaactctccttttccatgctaaatgccacc 44022135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 43768074 - 43768025
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    ||||||||||||||||||||||||| || || ||||||||||||||||||    
T  43768074 actttcccatggtgggaaacaactctccattcccatgctaaatgccacca 43768025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 52399009 - 52399076
Alignment:
Q  37 aatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||| |||| ||||| ||||||||||||| ||||||||   | ||||||||||||||||||||||||    
T  52399009 aatctaatggtcaaaatttactttcccatgatgggaaactctttcccttttccatgctaaatgccacc 52399076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 49161808 - 49161849
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  49161808 actttcccatggtgggaaacaattcccctttcccatgctaaa 49161849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 8653713 - 8653761
Alignment:
Q  49 aaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||| |||||||| |||||||||||||||  ||||||||||||||||||    
T  8653713 aaaatttactttctcatggtgggaaacaatcccccttttccatgctaaa 8653761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 44406952 - 44407008
Alignment:
Q  49 aaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    |||| ||||||||||||||||||||||||||  |  || ||||||||||||||||||    
T  44406952 aaaatttactttcccatggtgggaaacaactatctattcccatgctaaatgccacca 44407008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 23653283 - 23653216
Alignment:
Q  117 gtgaacttaactcgattggtaaaaacattgcataatatacgtaggggttggagttcgaactccgaaca 184  Q
    |||| ||||||||  ||||||| |||||||||||||||| | |||||| || |||||||| |||||||    
T  23653283 gtgagcttaactcagttggtaagaacattgcataatatatgcaggggtcggggttcgaaccccgaaca 23653216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 33968247 - 33968188
Alignment:
Q  38 atctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||| |||| |||||| || |||||||||||||||||||| | |||||| ||||||||||    
T  33968247 atctaatggtcaaaaaatattttcccatggtgggaaacaagttccctttcccatgctaaa 33968188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 45501292 - 45501335
Alignment:
Q  54 ttactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||    
T  45501292 ttactttcccatggtggaaaacaactcccctttcccatactaaa 45501335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 51420916 - 51420861
Alignment:
Q  49 aaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||| ||||||| ||||||| |||||||| || ||| |||||||||||||||||    
T  51420916 aaaaatgactttcctatggtggaaaacaacttccttttcccatgctaaatgccacc 51420861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 31598794 - 31598835
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  31598794 actttcccatggtgggaaacaacttttcttttccatgctaaa 31598835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 33455781 - 33455822
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||||| |||||||||||||| |||||||| ||||||||||    
T  33455781 actttcctatggtgggaaacaattcccctttcccatgctaaa 33455822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 49189496 - 49189549
Alignment:
Q  132 ttggtaaaaacattgcataatatacgtaggggttggagttcgaactccgaacat 185  Q
    |||||| ||||||||||||||||| | | |  ||||||||||||||||||||||    
T  49189496 ttggtagaaacattgcataatataagcaagaattggagttcgaactccgaacat 49189549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 51421675 - 51421716
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||||||||||||||||||||| ||||||||  |||||||||    
T  51421675 actttcccatggtgggaaacaattcccctttctcatgctaaa 51421716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 8652865 - 8652817
Alignment:
Q  49 aaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||| |||||||||||||||||||| | | |||||||| ||||||||||    
T  8652865 aaaatttactttcccatggtgggaaccgattcccctttcccatgctaaa 8652817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 49161034 - 49160994
Alignment:
Q  57 ctttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||| ||||||| ||||||||||||||||| ||||||||||    
T  49161034 cttttccatggtaggaaacaactcccctttcccatgctaaa 49160994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 42345442 - 42345393
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    ||||||||||||||||||||||||| || || ||||||||||||||||||    
T  42345442 actttcccatggtgggaaacaactctccattcccatgctaaatgccacca 42345393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 7054138 - 7054090
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||| ||||||||||||||||||| || || |||||||||||||||||    
T  7054138 acttttccatggtgggaaacaactctccattcccatgctaaatgccacc 7054090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 35943137 - 35943083
Alignment:
Q  43 atggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||| ||||||  |||| ||||||||||||||||||| |||||| ||||||||||    
T  35943137 atggacaaaaaaaacttccccatggtgggaaacaacttccctttcccatgctaaa 35943083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 35840530 - 35840571
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    |||||||||| ||||||||||||| |||||| ||||||||||    
T  35840530 actttcccatcgtgggaaacaacttccctttcccatgctaaa 35840571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 13935053 - 13935101
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||| ||||||| ||||||||  ||||| |||||||||||||||||    
T  13935053 actttcctatggtggaaaacaactttcctttcccatgctaaatgccacc 13935101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 34364661 - 34364721
Alignment:
Q  37 aatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||| ||||||||||| || ||| ||||| ||| |||||||| ||||||||||| |||||    
T  34364661 aatctaatggccaaaaaatatttttccatgatggaaaacaacttcccttttccattctaaa 34364721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 43433859 - 43433811
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||||||||||||||||||  | |||||||| ||||| |||||||||||    
T  43433859 actttcccatggtgggaaatgattcccctttcccatgttaaatgccacc 43433811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 24126041 - 24125972
Alignment:
Q  35 taaatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    ||||||| |||||  ||||| ||||||||||||||||||||||||||||||| |||   |||||||||||    
T  24126041 taaatctaatggctgaaaataactttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 29290171 - 29290130
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  29290171 actttcccatggtgggaaacaactctccatttccatgctaaa 29290130  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 6329902 - 6329839
Alignment:
Q  143 attgcataatatacgtaggggttggagttcgaactccgaacattctatttttaccacatttaaaa 207  Q
    ||||||||||||| ||||||||||||||| |||| ||| |||||||| || | ||||||||||||    
T  6329902 attgcataatatatgtaggggttggagtttgaaccccgtacattctacttct-ccacatttaaaa 6329839  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 8383983 - 8384059
Alignment:
Q  21 atcaacgatactcctaaatctgatggccaaaaattactttcccatggtgggaaacaactccccttttccatgctaaa 97  Q
    ||||||||| ||| ||||||| |  | |||||| || ||| |||||||||||||||||||| |||| ||||||||||    
T  8383983 atcaacgatcctcttaaatctaaccgtcaaaaaatatttttccatggtgggaaacaactccactttcccatgctaaa 8384059  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 24126718 - 24126767
Alignment:
Q  56 actttcccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    ||||||||||| ||||||||||||||||||| |||   ||||||||||||    
T  24126718 actttcccatgatgggaaacaactcccctttcccaaattaaatgccacca 24126767  T

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Target: scaffold0129 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 43216 - 43268
Alignment:
Q  54 ttactttcccatggtgggaaacaactccccttttccatgctaaatgccaccac 106  Q
    ||||||||||||| |||||||||||||||||||||||| |||||  |||||||    
T  43216 ttactttcccatgatgggaaacaactccccttttccatactaaaccccaccac 43268  T

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Target: scaffold2003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 524 - 579
Alignment:
Q  49 aaaaattactttcccatggtgggaaacaactccccttttccatgctaaatgccacc 104  Q
    |||| ||||||| ||||||||||||||||||||||||| ||||||| ||| |||||    
T  524 aaaatttacttttccatggtgggaaacaactcccctttcccatgcttaatcccacc 579  T

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Target: scaffold0150 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 14054 - 14011
Alignment:
Q  62 ccatggtgggaaacaactccccttttccatgctaaatgccacca 105  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  14054 ccatggtgggaaacaactcccctttcccatgctaaatcccacca 14011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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