View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19320_low_4 (Length: 546)

Name: NF19320_low_4
Description: NF19320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19320_low_4
NF19320_low_4
[»] chr1 (7 HSPs)
chr1 (1-542)||(30730283-30730823)
chr1 (48-142)||(13311107-13311201)
chr1 (57-136)||(11780977-11781056)
chr1 (4-133)||(21805381-21805511)
chr1 (48-145)||(10425415-10425512)
chr1 (359-483)||(21797081-21797205)
chr1 (220-315)||(21797249-21797344)
[»] chr5 (9 HSPs)
chr5 (1-538)||(13644432-13644968)
chr5 (1-530)||(35339723-35340251)
chr5 (57-145)||(11722518-11722606)
chr5 (39-133)||(17763313-17763407)
chr5 (48-142)||(19070230-19070324)
chr5 (164-418)||(5782862-5783116)
chr5 (48-103)||(5782748-5782803)
chr5 (4-133)||(21899664-21899794)
chr5 (431-471)||(17762977-17763017)
[»] chr2 (8 HSPs)
chr2 (39-519)||(20380558-20381036)
chr2 (4-534)||(25976580-25977109)
chr2 (1-536)||(3867655-3868189)
chr2 (341-545)||(20387938-20388142)
chr2 (48-142)||(5114974-5115068)
chr2 (57-136)||(12101137-12101216)
chr2 (37-125)||(15702093-15702181)
chr2 (61-127)||(21152357-21152423)
[»] chr4 (15 HSPs)
chr4 (1-533)||(15443060-15443591)
chr4 (312-542)||(11486430-11486658)
chr4 (1-420)||(17938998-17939420)
chr4 (1-210)||(39915303-39915511)
chr4 (1-210)||(7188222-7188430)
chr4 (257-449)||(7184961-7185153)
chr4 (63-498)||(8668663-8669096)
chr4 (4-145)||(10674794-10674936)
chr4 (4-145)||(10888434-10888576)
chr4 (57-498)||(33042193-33042631)
chr4 (4-142)||(1930191-1930330)
chr4 (86-145)||(10697303-10697362)
chr4 (86-145)||(10911072-10911131)
chr4 (356-420)||(10697570-10697634)
chr4 (4-90)||(10693639-10693726)
[»] chr6 (9 HSPs)
chr6 (1-538)||(33312208-33312744)
chr6 (1-480)||(16735-17211)
chr6 (171-528)||(12433859-12434216)
chr6 (1-480)||(3548399-3548877)
chr6 (1-136)||(18308308-18308444)
chr6 (263-484)||(18308444-18308665)
chr6 (1-136)||(12434228-12434364)
chr6 (66-133)||(11777056-11777123)
chr6 (57-142)||(13734702-13734787)
[»] chr7 (3 HSPs)
chr7 (4-534)||(20942377-20942906)
chr7 (4-136)||(3729255-3729388)
chr7 (279-459)||(17181326-17181506)
[»] scaffold0061 (1 HSPs)
scaffold0061 (37-436)||(37765-38162)
[»] scaffold0017 (1 HSPs)
scaffold0017 (37-436)||(160617-161014)
[»] scaffold0238 (1 HSPs)
scaffold0238 (1-536)||(1454-1988)
[»] scaffold0125 (2 HSPs)
scaffold0125 (1-480)||(31372-31850)
scaffold0125 (1-480)||(40683-41161)
[»] scaffold0292 (1 HSPs)
scaffold0292 (1-215)||(19371-19584)
[»] scaffold0490 (1 HSPs)
scaffold0490 (57-533)||(11673-12147)
[»] scaffold0416 (1 HSPs)
scaffold0416 (1-400)||(8974-9372)
[»] chr3 (7 HSPs)
chr3 (1-210)||(3582211-3582419)
chr3 (171-420)||(20972050-20972299)
chr3 (1-183)||(14679773-14679954)
chr3 (1-142)||(16313295-16313437)
chr3 (1-142)||(18494289-18494431)
chr3 (1-124)||(20971923-20972042)
chr3 (56-133)||(19829793-19829870)
[»] scaffold0044 (1 HSPs)
scaffold0044 (301-532)||(93587-93818)
[»] scaffold0281 (1 HSPs)
scaffold0281 (37-467)||(5325-5753)
[»] scaffold0012 (1 HSPs)
scaffold0012 (4-315)||(61300-61610)
[»] scaffold0363 (1 HSPs)
scaffold0363 (4-142)||(6999-7138)
[»] chr8 (6 HSPs)
chr8 (4-142)||(14411573-14411712)
chr8 (4-459)||(21591081-21591535)
chr8 (76-142)||(23600151-23600217)
chr8 (1-53)||(4207549-4207602)
chr8 (48-127)||(17458699-17458778)
chr8 (48-125)||(18694071-18694148)
[»] scaffold0093 (1 HSPs)
scaffold0093 (4-133)||(10368-10498)
[»] scaffold0062 (2 HSPs)
scaffold0062 (37-125)||(51005-51093)
scaffold0062 (37-125)||(63544-63632)


Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 30730823 - 30730283
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    ||||||||||||||||||||||| ||||||| |||| | ||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30730823 tgaccaaaggtacgatttctagttggcccatagatatctatttgtgttccaactgtgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 30730724  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||  ||| |||| ||||||||||||||||||||||||    
T  30730723 gtaactccaccaaacgaatccaaagcgaaacatgagtttgtttttgcaccaacaacttaaagtct--ttggtccagtgagagaatctcaacaaaccaggc 30730626  T
Q  200 ttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgc 299  Q
    || |||||||| |||| ||  ||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||    
T  30730625 ttgagatttaccgtgcctgcagcctaaattttctttaaatcgtccaccgattcgaaaggaaaatcataaaatcctttaccaagaggcaccattttccagc 30730526  T
Q  300 ttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacacctt 399  Q
     | |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |||| |||||    
T  30730525 ctaccgttgtcttccaaaccttcccaattttagcactgagatcacgcgcagaaaaaggtttatcccctttgtgaagagtcaaacgcacctttaagacctt 30730426  T
Q  400 cctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaaggaaaatgtctgtcgtcaatt 499  Q
    |||  ||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||    
T  30730425 cctacaatcttctactcccttctggtattcctcttgacagattttgatgcttaacgcatctcctttaatgcacagagaagggaaaggtctatcgtcaatt 30730326  T
Q  500 tcctttgtccctgcaagagctgctgcaaaggacaatgtttgtg 542  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  30730325 tcctttatccccgcaagagctgctgcaaaggacaatgtttgtg 30730283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 13311107 - 13311201
Alignment:
Q  48 ccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagtttgttt 142  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||| || ||||||||||||||    
T  13311107 ccaaccgcacttgcaatttccttcaaggttctctcccgccaatactcatgcggtaactccaccaagcgaatccaaagagatacatgagtttgttt 13311201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 11780977 - 11781056
Alignment:
Q  57 cttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagt 136  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||||||||| | ||  |||||||||||| | ||||||||    
T  11780977 cttgctatttccttcaatgttctctcccaccaatactcttgcggtaattcaaccagtcgaatccaaagcaatacatgagt 11781056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 21805511 - 21805381
Alignment:
Q  4 ccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggta 102  Q
    ||||| ||||| |||||||| || ||||| ||| |||| || || ||||| || || |||||||||||||| ||||||||||| ||||||||||| ||||    
T  21805511 ccaaaagtacggtttctagttggtccatcaatatcaattggagtcccaaccgcactagcaatttccttcaacgttctctcccgtcaatactcttgtggta 21805412  T
Q  103 attccatcaaacgaatccaaagcgaaacatg 133  Q
      |||| |||||| ||||||| ||| |||||    
T  21805411 gctccaccaaacgtatccaaatcgatacatg 21805381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 10425415 - 10425512
Alignment:
Q  48 ccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttg 145  Q
    ||||| || ||||||||||||||||||||||||||| || ||||||  |||||||| |||| ||| |||||||| |  || |||||||| ||||||||    
T  10425415 ccaaccgcacttgcaatttccttcaaggttctctcctgcaaatacttctgcggtaactccaccaagcgaatccataaagatacatgagtatgtttttg 10425512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 483
Target Start/End: Complemental strand, 21797205 - 21797081
Alignment:
Q  359 ttatcccctttgttaagagtcaaacgcgcccttaacaccttcctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcat 458  Q
    |||||||||||| |||| |||| ||| ||||||||  | | | |  ||||||| |  ||||| |||| |||||||||||| ||||||||||| || ||||    
T  21797205 ttatcccctttgctaagggtcagacgagcccttaaagcgtgcttacaatcttccaagcccttacggtattcctcctgacaaattttgatgctcaaggcat 21797106  T
Q  459 ctcctttaatgcacggagaaggaaa 483  Q
    | |||||||| ||||| || |||||    
T  21797105 cccctttaatacacggtgagggaaa 21797081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 315
Target Start/End: Complemental strand, 21797344 - 21797249
Alignment:
Q  220 tgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgcttgccgttgtcttcca 315  Q
    |||||| |||||| |  |||| ||| ||||||| ||  ||||||||||| | |||||||||||||| ||||||||||  |  ||||||||||||||    
T  21797344 tgcccatattttcctataatcatccgccgattcaaagagaaaatcataataccccttaccaagaggtaccattttccaaccagccgttgtcttcca 21797249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 538
Target Start/End: Original strand, 13644432 - 13644968
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgataca-ataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    |||||||||| |||||||||||| || || |||||| | ||||| || |||||||| |||||||||||| |||||||||||||||||||||||||||| |    
T  13644432 tgaccaaaggaacgatttctagttggtccgtcgataaatataggagtaccaactgcacttgcaatttccatcaaggttctctcccgccaatactcttgtg 13644531  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    |||  || | ||||||||||||||||||| ||||||| ||||| |||  |||||  |||||||||  ||| ||||||| || ||||||||||||||||||    
T  13644532 gtagctctaccaaacgaatccaaagcgaagcatgagtctgtttctgcgtcaaaattttaaagtct--ttggtccattgtgaaaatctcaacaaaccaggc 13644629  T
Q  200 ttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgc 299  Q
    || ||||||||||||| |  | |||| |||||||||||||| ||| |||| || |||||||| |||||| | ||||| |||||||||||||||||||       
T  13644630 ttgagatttactgtgcctactacccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataccccttgccaagaggcaccattttccatt 13644729  T
Q  300 ttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacacctt 399  Q
     |||| |||||||||||  |||  ||||||||  |||||||||||  | |||| ||||||| || ||||||||||||||||| || ||||||||||||||    
T  13644730 ctgccattgtcttccaagtcttatcaattttaatactgagatcacatgcagaataaggtttgtctcctttgttaagagtcaaccgagcccttaacacctt 13644829  T
Q  400 cctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaaggaaaatgtctgtcgtcaatt 499  Q
    ||   |||||||||||||||| |||| |||||||||||||||||||||||| |||||| | |||||||||   |||||||| ||  || |||| ||||||    
T  13644830 ccgacaatcttctactcccttacggtattcctcctgacagattttgatgctaaacgcaccacctttaatgattggagaagggaagggtttgtcatcaatt 13644929  T
Q  500 tcctttgtccctgcaagagctgctgcaaaggacaatgtt 538  Q
     |  |  |||| |||||||||||||||||||||| ||||    
T  13644930 actgtcttccccgcaagagctgctgcaaaggacattgtt 13644968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 530
Target Start/End: Complemental strand, 35340251 - 35339723
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    ||||||||| ||||||||||||| || ||||| ||| |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  35340251 tgaccaaagatacgatttctagttggtccatcaatatcaataggtgtaccaacggcacttgcaatttccttcaaggttctctcccgccaatactcttgcg 35340152  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    |||| |||| |||||| |||||||  || |||||||| ||||| ||| ||  ||  |||||||||  ||  ||||||| || ||||||||||||||||||    
T  35340151 gtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtct--ttagtccattgtgaaaatctcaacaaaccaggc 35340054  T
Q  200 ttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgc 299  Q
    || ||||| || || | |  |||||| |||||||||||||| ||| |||||||||||||||| |||||| | |||||||| ||||||||||||||||  |    
T  35340053 tttagattaaccgttcctactgcccatattttctttaaatcctccgccgattcgaaatgaaagtcataataccccttaccgagaggcaccattttccaac 35339954  T
Q  300 ttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacacctt 399  Q
     ||||| |||  ||||||  ||| |||||||| ||||||||||||| | |||  |||| || |||||||| ||||||||||| || ||||||||| ||||    
T  35339953 ctgccgctgttctccaaattttcccaattttaacactgagatcacgtgcagagtaaggcttgtcccctttattaagagtcaagcgagcccttaacgcctt 35339854  T
Q  400 cctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaaggaaaatgtctgtcgtcaatt 499  Q
     ||  ||||||| | |||||| | || ||| || || || || ||||||||||| |||||  |||| ||||| |||||||||||| || |||| ||  |     
T  35339853 tctacaatcttccagtcccttactgtattcatcttggcaaatcttgatgcttaaagcatcggctttgatgcaaggagaaggaaaaggtttgtcatccgta 35339754  T
Q  500 tcctttgtccctgcaagagctgctgcaaagg 530  Q
     || | ||||| |||||||||| ||||||||    
T  35339753 accgtagtccccgcaagagctgttgcaaagg 35339723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 11722606 - 11722518
Alignment:
Q  57 cttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttg 145  Q
    ||||| |||||||||||  |||||||||||||||| ||||||||||| |||| ||| ||||||||||| ||||||||||| ||||||||    
T  11722606 cttgctatttccttcaaaattctctcccgccaatattcttgcggtaactccaccaatcgaatccaaagtgaaacatgagtctgtttttg 11722518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 17763407 - 17763313
Alignment:
Q  39 ataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatg 133  Q
    ||||| ||||||||   |||||||||||||||||| |||||||||| | ||||||| |||||||| || | ||| ||||||||||| ||||||||    
T  17763407 ataggggttccaaccatgcttgcaatttccttcaatgttctctcccactaatactcctgcggtaactcaaccaagcgaatccaaagtgaaacatg 17763313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 19070230 - 19070324
Alignment:
Q  48 ccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagtttgttt 142  Q
    ||||| |||||||| || |||||||| |||||||||||||||||||||||| |||| || | ||| ||||||||||| || ||||| || |||||    
T  19070230 ccaaccgcgcttgcgatctccttcaaagttctctcccgccaatactcttgcagtaactcaaccaagcgaatccaaagagatacatgtgtctgttt 19070324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 164 - 418
Target Start/End: Original strand, 5782862 - 5783116
Alignment:
Q  164 tctttgctccattgagagaatctcaacaaaccaggcttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaat 263  Q
    |||||| |||| || || |||||||||||||| ||||| || || ||||| | || |||||| ||||||  || ||| |||||||| || || ||||| |    
T  5782862 tctttggtccactgcgataatctcaacaaacccggcttgaggttgactgtacctgctgcccatattttccgtagatcatccaccgagtcaaagtgaaagt 5782961  T
Q  264 cataaaatcccttaccaagaggcaccattttcctgcttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatc 363  Q
    ||||  | || || ||||||||||||||||||| |   |||| ||| ||||||  |||  | ||||| | ||| | |||||| | | || | || |||||    
T  5782962 catagtaacctttgccaagaggcaccattttccaggccgccgatgttttccaatgctttcctattttggtacttaaatcacgtgcaaaatacggcttatc 5783061  T
Q  364 ccctttgttaagagtcaaacgcgcccttaacaccttcctgaaatcttctactccc 418  Q
     || |||||||||||||| || ||||||||||| ||| || | ||||||||||||    
T  5783062 tcccttgttaagagtcaagcgagcccttaacacattcttgcattcttctactccc 5783116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 5782748 - 5782803
Alignment:
Q  48 ccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaa 103  Q
    ||||| |||||||| || |||||||| ||||||||||||||||| || ||||||||    
T  5782748 ccaaccgcgcttgcgatctccttcaaagttctctcccgccaatattcctgcggtaa 5782803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 21899664 - 21899794
Alignment:
Q  4 ccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggta 102  Q
    ||||| ||||| |||| ||| || ||||| ||| |||| || || ||||| || || ||||||||||||||  ||||||||| |||||||||||| ||||    
T  21899664 ccaaaagtacggtttcgagttggtccatcaatatcaattggagtcccaaccgcactagcaatttccttcaacattctctccctccaatactcttgtggta 21899763  T
Q  103 attccatcaaacgaatccaaagcgaaacatg 133  Q
      || | |||||| |||||||| || |||||    
T  21899764 gctcgaccaaacgtatccaaagtgatacatg 21899794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 471
Target Start/End: Complemental strand, 17763017 - 17762977
Alignment:
Q  431 tcctgacagattttgatgcttaacgcatctcctttaatgca 471  Q
    |||||||||||||||||||| || ||||||||||| |||||    
T  17763017 tcctgacagattttgatgctcaaagcatctcctttcatgca 17762977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 39 - 519
Target Start/End: Complemental strand, 20381036 - 20380558
Alignment:
Q  39 ataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagttt 138  Q
    ||||| || |||| ||| ||||| ||||||||||| |||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  20381036 ataggggtgccaaatgcacttgctatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaacgaatccaaagcgaaacatgagttt 20380937  T
Q  139 gtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggcttaagatttactgtgcatgttgcccaaattttctttaaa 238  Q
    ||||||||||||| |||||||||||| |||| |||||||||||||||| ||||| ||||| || | |||||| ||||  | ||||||||| || ||||||    
T  20380936 gtttttgcaccaatagcttaaagtct-tttg-tccattgagagaatcttaacaatccaggtttgatatttaccgtgccggctgcccaaatgttttttaaa 20380839  T
Q  239 tcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgcttgccgttgtcttccaaaccttcgcaattttagcactga 338  Q
    || ||||||||||| || |||||||||||||| |||||||  ||||||||||||||||  | |||||| |||||||||| |||| ||| |||  | ||||    
T  20380838 tcatccaccgattcaaagtgaaaatcataaaaacccttactgagaggcaccattttccatcctgccgtcgtcttccaaatcttcccaactttttccctga 20380739  T
Q  339 gatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacaccttcctgaaatcttctactcccttccggttttcctcctgaca 438  Q
    | ||||||| ||| |  ||||| || || ||| |||||||||||||||| | ||| ||||||||  ||||||| |||||||||||||  |||||||||||    
T  20380738 ggtcacgcgtagatagtggtttgtctcccttgctaagagtcaaacgcgcacgtaaaaccttcctacaatcttcgactcccttccggtactcctcctgaca 20380639  T
Q  439 gattttgatgcttaacgcatctcctttaatgcacggagaaggaaaatgtctgtcgtcaatttcctttgtccctgcaagagc 519  Q
     ||||| |||||||| ||||| ||||| |||||||||||||| ||  ||||||| |||||  | |||||||||| ||||||    
T  20380638 aatttttatgcttaaagcatcacctttgatgcacggagaagggaatggtctgtcatcaataacttttgtccctgtaagagc 20380558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 4 - 534
Target Start/End: Original strand, 25976580 - 25977109
Alignment:
Q  4 ccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggta 102  Q
    ||||||||||| |||||||| |||||||| ||  ||||||| || || || || || || ||||||||||||||||  ||||||||||||||||||||||    
T  25976580 ccaaaggtacggtttctagttggcccatcaatgtcaataggcgtgcccacggcactagctatttccttcaaggttcgttcccgccaatactcttgcggta 25976679  T
Q  103 attccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggctta 202  Q
    | |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||| |  || || |||||||||    
T  25976680 actccaccaagcgaatccaaagcgaaacatgagtttgtttttgcaccaaaagtttaaag--tctttggtccattgagagaaccgtaataatccaggctta 25976777  T
Q  203 agatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgcttg 302  Q
    || || | ||||| || |||||| || |||| ||||||||||||||| || || |||||||||||||| ||||| || ||||||||||||||||  | ||    
T  25976778 aggttcattgtgcctgctgcccatatcttctgtaaatcgtccaccgagtcaaagtgaaaatcataaaaaccctttcctagaggcaccattttccaacctg 25976877  T
Q  303 ccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacaccttcct 402  Q
    | |  |||| ||||| |||| ||||| |  | ||||| ||||| | ||||| |||||| ||||| ||| | ||||||| |||||| | ||| ||||| |     
T  25976878 ctgccgtctgccaaatcttcccaattctgtccctgagctcacgggcagaaagaggtttgtcccccttgctgagagtcagacgcgcacgtaaaaccttacg 25976977  T
Q  403 gaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaaggaaaatgtctgtcgtcaatttcc 502  Q
      ||||||| |||||||||||||  ||||||||| ||||||| |||||||| ||||| ||||| || ||||||||||| ||| |||| || |||||| |     
T  25976978 acaatcttcaactcccttccggtactcctcctgatagattttaatgcttaaagcatcacctttgatccacggagaagggaaaggtctttcatcaattacg 25977077  T
Q  503 tttgtccctgcaagagctgctgcaaaggacaa 534  Q
     |||||||||  |||||||| || ||||||||    
T  25977078 gttgtccctgtgagagctgcagcgaaggacaa 25977109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 3868189 - 3867655
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    |||||||| |||||||||||||| || ||||| ||| |||||||||||||||| || |||||||||||||||||||| |||||||| ||||| ||||| |    
T  3868189 tgaccaaaagtacgatttctagttggtccatcaatatcaataggtgttccaaccgcacttgcaatttccttcaaggtcctctcccgtcaatattcttgtg 3868090  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    ||| ||| | |||||| |||||||| || |||||||| ||||| ||| ||  ||  |||||||| ||| | ||||||| || ||||||||||||||||||    
T  3868089 gtagttctaccaaacgtatccaaagtgatacatgagtctgtttctgcgcctgaaatttaaagtc-cttag-tccattgtgaaaatctcaacaaaccaggc 3867992  T
Q  200 ttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgc 299  Q
    |||||||||||||| | |  |||||| ||||| ||||| || ||| |||| |  || ||||| |||||| | ||||||||||||||||||||||||  ||    
T  3867991 ttaagatttactgtccctactgcccatattttttttaagtcctccgccgagtaaaagtgaaagtcataataccccttaccaagaggcaccattttctagc 3867892  T
Q  300 ttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacacctt 399  Q
    ||||||||||||||||||  ||  |||| |||  | | |||||||| | |||  |||||||  ||||||||||||||||||| || ||||||||||| ||    
T  3867891 ttgccgttgtcttccaaatttttccaatgttaatattaagatcacgtgcagagtaaggtttgccccctttgttaagagtcaatcgagcccttaacacttt 3867792  T
Q  400 cctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaaggaaaatgtctgtcgtcaatt 499  Q
    ||   ||||||| | ||||||  ||| ||| || | |||||||||||||||||| ||||| ||||| ||||| |||||||| ||| | ||||| ||  |     
T  3867791 ccgacaatcttccaatcccttatggtattcatcttaacagattttgatgcttaaagcatcgcctttgatgcaaggagaagggaaaggcctgtcatccgta 3867692  T
Q  500 tcctttgtccctgcaagagctgctgcaaaggacaatg 536  Q
     | || ||||| |||||||||||||| || |||||||    
T  3867691 acattagtccccgcaagagctgctgcgaaagacaatg 3867655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 341 - 545
Target Start/End: Complemental strand, 20388142 - 20387938
Alignment:
Q  341 tcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacaccttcctgaaatcttctactcccttccggttttcctcctgacaga 440  Q
    ||||||| ||||| |||||| || || ||| ||||||||||||| |||  ||||||||||||  |||||||||||||||||||||  ||||||||||| |    
T  20388142 tcacgcgcagaaagaggtttttcgcccttgctaagagtcaaacgtgccagtaacaccttcctacaatcttctactcccttccggtactcctcctgacaaa 20388043  T
Q  441 ttttgatgcttaacgcatctcctttaatgcacggagaaggaaaatgtctgtcgtcaatttcctttgtccctgcaagagctgctgcaaaggacaatgtttg 540  Q
    |||  |||||| | |||||  |||| |||||||||||||| ||  |||| ||||||||| | | |||||||| |||||| || ||||| ||||| | |||    
T  20388042 tttgtatgcttgaagcatcaactttgatgcacggagaagggaatggtctttcgtcaattacttgtgtccctgtaagagcagcagcaaacgacaaagcttg 20387943  T
Q  541 tgttg 545  Q
    |||||    
T  20387942 tgttg 20387938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 5115068 - 5114974
Alignment:
Q  48 ccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagtttgttt 142  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||| |||||||| |||| ||| ||||||||||| || |||||||| |||||    
T  5115068 ccaaccgcacttgcaatttccttcaaggttctctcccaccaatactcctgcggtaactccaccaagcgaatccaaagagatacatgagtctgttt 5114974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 12101216 - 12101137
Alignment:
Q  57 cttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagt 136  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||| || | ||  |||||||||||||| | ||||||    
T  12101216 cttgctatttcattcaatgttctctcccgccaatactcttgcggtaactcaaccagtcgaatccaaagcgataaatgagt 12101137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 15702181 - 15702093
Alignment:
Q  37 caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagc 125  Q
    ||||||| || ||||| || ||| ||||||| ||||| ||||| |||||||||||||| |||||||| || | |||||| ||| |||||    
T  15702181 caataggagtgccaaccgcactttcaatttctttcaaagttctttcccgccaatactcatgcggtaactcaaccaaacgtatctaaagc 15702093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 21152423 - 21152357
Alignment:
Q  61 caatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcga 127  Q
    ||||||| ||||| ||||| |||||||||||||| ||| |||| || | ||||||| ||||||||||    
T  21152423 caatttctttcaaagttctttcccgccaatactcatgcagtaactcaaccaaacgagtccaaagcga 21152357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 15443060 - 15443591
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    ||||||||||  ||||||||||| || || |||||| | ||||| || |||||||| |||||||||||| ||| |||||||||||||||||||||||| |    
T  15443060 tgaccaaaggagcgatttctagttggtccgtcgatatctataggagtaccaactgcacttgcaatttccatcagggttctctcccgccaatactcttgtg 15443159  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    |||  |||| |||| ||||||||||||||  |||||| ||||| |||  |||||| |||||||||  ||| | | ||| || ||||||||||||||||||    
T  15443160 gtagctccaccaaaagaatccaaagcgaagtatgagtctgtttctgcgtcaaaagtttaaagtct--ttggtgcgttgtgaaaatctcaacaaaccaggc 15443257  T
Q  200 ttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgc 299  Q
    || ||||| || |||| || | |||| |||||||||||||| ||| |||| || |||||||| |||||| | ||||| |||||||||||||||||||  |    
T  15443258 ttgagattgaccgtgcctgctacccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataccccttgccaagaggcaccattttccatc 15443357  T
Q  300 ttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacacctt 399  Q
     |||| |||||||||||  |||  ||||||||  |||||||||||||| |||| ||||||| || ||||||||||||||||| || ||||||||||||||    
T  15443358 ctgccattgtcttccaagtcttatcaattttaatactgagatcacgcgcagaataaggtttgtctcctttgttaagagtcaaccgagcccttaacacctt 15443457  T
Q  400 cctga-aatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaaggaaaatgtctgtcgtcaat 498  Q
     |||| |||||||||||||||| |||| |||||||||||||||||||||||| |||||| | ||||||||||| |||||||| ||  || |||| |||||    
T  15443458 -ctgacaatcttctactcccttacggtattcctcctgacagattttgatgctcaacgcaccacctttaatgcatggagaaggcaagggtttgtcatcaat 15443556  T
Q  499 ttcctttgtccctgcaagagctgctgcaaaggaca 533  Q
    |    |  |||| ||||||||||||||||||||||    
T  15443557 tattgtcttccccgcaagagctgctgcaaaggaca 15443591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 312 - 542
Target Start/End: Original strand, 11486430 - 11486658
Alignment:
Q  312 tccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacaccttcctgaaatcttc 411  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  11486430 tccaaaccttcccaattttagcactgagatcacgcgcagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacaccttcctacaatcttc 11486529  T
Q  412 tactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaaggaaaatgtctgtcgtcaatttcctttgtccct 511  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||  |||| |     
T  11486530 tactcccttccggtattcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaaggataaggtatgtcgtcaatttcc--tgtctcc 11486627  T
Q  512 gcaagagctgctgcaaaggacaatgtttgtg 542  Q
    |||||||||||||||||||||||||||||||    
T  11486628 gcaagagctgctgcaaaggacaatgtttgtg 11486658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 17939420 - 17938998
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    |||||||||| |||||||||||| ||||| |||||| | ||||| || |||||||| |||||||||||| ||| |||||||||||||||||||||||| |    
T  17939420 tgaccaaaggaacgatttctagttggcccgtcgatatctataggagtaccaactgcacttgcaatttccatcagggttctctcccgccaatactcttgtg 17939321  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    |||  |||| ||||||||||||||||||| ||||||| ||||| | |  |||||   |||||  |||||| ||||||| || ||||||||||||||||||    
T  17939320 gtagctccaccaaacgaatccaaagcgaagcatgagtctgtttctacgtcaaaattataaag--tctttggtccattgtgaaaatctcaacaaaccaggc 17939223  T
Q  200 ttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgc 299  Q
    || |||||||| |||| || | |||| |||||||||||||| ||| |||| || |||||||| |||||| | ||||| ||||||| |||||||||||  |    
T  17939222 ttgagatttaccgtgcctgctacccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataccccttgccaagagacaccattttccatc 17939123  T
Q  300 ttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccc----tttgttaagagtcaaacgcgcccttaaca 395  Q
     |||| |||||||||||  |||  ||||||||  |||||||||||| | |||| ||||||| || ||    ||||||||||||||| || ||||||||||    
T  17939122 ctgccattgtcttccaagtcttatcaattttaatactgagatcacgtgcagaataaggtttgtctccttaatttgttaagagtcaaccgagcccttaaca 17939023  T
Q  396 ccttcctga-aatcttctactccctt 420  Q
    |||| |||| ||||||||||||||||    
T  17939022 cctt-ctgacaatcttctactccctt 17938998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 39915303 - 39915511
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    |||||||| |||| ||||||||| || ||||| ||| ||||| ||||| |||| || ||||||||||| |||||||| ||||||||||||||||||||||    
T  39915303 tgaccaaaagtacaatttctagttggtccatcaatatcaatacgtgtttcaaccgcacttgcaatttctttcaaggtcctctcccgccaatactcttgcg 39915402  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    ||| ||| | |||||| |||||||| ||  ||||||| ||||| ||| ||  ||  |||||||| ||| | ||||||| || |||||||||| |||||||    
T  39915403 gtagttctaccaaacgtatccaaagtgatgcatgagtctgtttctgcgcctgaaatttaaagtc-cttag-tccattgtgaaaatctcaacagaccaggc 39915500  T
Q  200 ttaagatttac 210  Q
    |||||||||||    
T  39915501 ttaagatttac 39915511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 7188430 - 7188222
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    |||||||| |||||||||||||| || ||||  ||| |||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||||     
T  7188430 tgaccaaaagtacgatttctagttggtccataaatatcaataggtgttccaaccgcacttgcaatttccttcaaggtcctctcccgccaatattcttgca 7188331  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    ||| ||| | |||||| |||||||| || ||| |||| || || ||  ||  |   ||||||  || ||| ||||||| || ||||||||||||||||||    
T  7188330 gtagttctaccaaacgtatccaaagtgatacacgagtctgcttctgtgcctgatatttaaag--tccttggtccattgtgaaaatctcaacaaaccaggc 7188233  T
Q  200 ttaagatttac 210  Q
    |||||||||||    
T  7188232 ttaagatttac 7188222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 257 - 449
Target Start/End: Complemental strand, 7185153 - 7184961
Alignment:
Q  257 tgaaaatcataaaatcccttaccaagaggcaccattttcctgcttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaag 356  Q
    ||||| |||||| | ||||||||||||||||||||||||| ||||||||||||||||||||  ||  ||||||||  |||||| ||||| | |||  |||    
T  7185153 tgaaagtcataataacccttaccaagaggcaccattttccagcttgccgttgtcttccaaatttttccaattttaatactgagttcacgtgcagagtaag 7185054  T
Q  357 gtttatcccctttgttaagagtcaaacgcgcccttaacaccttcctgaaatcttctactcccttccggttttcctcctgacagattttgatgc 449  Q
    |||| ||||||||||| ||||||||  | ||||||||||| ||||   ||||||| | ||||||  ||| ||| || ||| ||||||||||||    
T  7185053 gtttgtcccctttgttgagagtcaattgagcccttaacactttccgacaatcttccagtcccttatggtattcatcttgatagattttgatgc 7184961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 63 - 498
Target Start/End: Original strand, 8668663 - 8669096
Alignment:
Q  63 atttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagt 162  Q
    ||||||||||| |||||||||||||||||||| |||||||| |||| ||| ||||||||||| || ||||| |||||||| ||  |   |   || ||      
T  8668663 atttccttcaaagttctctcccgccaatactcctgcggtaactccaccaagcgaatccaaagagatacatgtgtttgtttctgagcatgatatttgaa-- 8668760  T
Q  163 ctctttgctccattgagagaatctcaacaaaccaggcttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaa 262  Q
     |||||| ||||||| || || || | |||||| ||||| || || ||||||  || |||||| || |||  || ||||||| |||| || |||||||||    
T  8668761 atctttggtccattgtgataaccttagcaaacctggcttgaggttaactgtgtctgctgcccatatcttccctagatcgtccgccgagtcaaaatgaaaa 8668860  T
Q  263 tcataaaatcccttaccaagaggcaccattttcctgcttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttat 362  Q
    |||||  |||| || || |||||||||||||||| ||  |||| ||| ||||||| |||  | ||||||   || |  ||||| | |||  | || ||||    
T  8668861 tcatagtatcctttgccgagaggcaccattttccagcccgccgatgttttccaaagcttttcgattttattgcttaagtcacgtgcagagtatggcttat 8668960  T
Q  363 cccctttgttaagagtcaaacgcgcccttaacaccttcctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcc 462  Q
    | || ||||||||||||||||| ||||||||| ||||| || | ||||| |||||| |  |||  || ||||| |||||||||||||| || ||||| ||    
T  8668961 ctcccttgttaagagtcaaacgagcccttaacgccttcttgcattcttccactcccatatggtactcttcctggcagattttgatgctcaaagcatcgcc 8669060  T
Q  463 tttaatgcacggagaaggaaaatgtctgtcgtcaat 498  Q
     |||||||| |||| ||| | | ||||||| |||||    
T  8669061 cttaatgcatggagtaggtagaggtctgtcatcaat 8669096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 10674936 - 10674794
Alignment:
Q  4 ccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggta 102  Q
    ||||||||| ||||||  ||||||||||| ||  |||| ||||| || || || ||||| |||||||||||  |||||||||||||||| ||||||||||    
T  10674936 ccaaaggtatgatttcgcgtcggcccatcaatgtcaatcggtgtacctaccgcacttgctatttccttcaaaattctctcccgccaatattcttgcggta 10674837  T
Q  103 attccatcaaacgaatccaaagcgaaacatgagtttgtttttg 145  Q
    | ||||  || ||||||||||| ||||||||||||||||||||    
T  10674836 actccactaatcgaatccaaagtgaaacatgagtttgtttttg 10674794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 10888576 - 10888434
Alignment:
Q  4 ccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggta 102  Q
    ||||||||| ||||||  ||||||||||| ||  |||| ||||| || || || ||||| |||||||||||  |||||||||||||||| ||||||||||    
T  10888576 ccaaaggtatgatttcgcgtcggcccatcaatgtcaatcggtgtacctaccgcacttgctatttccttcaaaattctctcccgccaatattcttgcggta 10888477  T
Q  103 attccatcaaacgaatccaaagcgaaacatgagtttgtttttg 145  Q
    | ||||  || ||||||||||| ||||||||||||||||||||    
T  10888476 actccactaatcgaatccaaagtgaaacatgagtttgtttttg 10888434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 57 - 498
Target Start/End: Original strand, 33042193 - 33042631
Alignment:
Q  57 cttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagct 156  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||| ||  |||| || ||||| ||  ||  |   |    
T  33042193 cttgcgatttccttcaaggttctctcccgccaatactcctgcggtaactccaccaagcgaatccaaagagatgcatgtgtctgtttctgagcctgatatt 33042292  T
Q  157 taaagtctctttgctccattgagagaatctcaacaaaccaggcttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaa 256  Q
    | ||   |||||  |||| || || ||||| |||||||| ||||| || || |||||||||| |||||| |||||| ||| ||| ||| |||| || ||     
T  33042293 tgaa--atctttagtccactgtgataatcttaacaaacccggcttgaggttgactgtgcatgctgcccatattttccttagatcatccgccgagtcaaag 33042390  T
Q  257 tgaaaatcataaaatcccttaccaagaggcaccattttcctgcttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaag 356  Q
    ||||| |||||  | || || || ||||||||||||||||  || |||| ||| ||||||| |||  | ||||| | | | || ||||| | |||| | |    
T  33042391 tgaaagtcatagtaacctttgccgagaggcaccattttccatctcgccgatgttttccaaagctttccgattttggtatttaggtcacgtgcagaatacg 33042490  T
Q  357 gtttatcccctttgttaagagtcaaacgcgcccttaacaccttcctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgc 456  Q
    | |||||||| |||||||||||||| || ||||||||| | ||| || | || ||||||||| |  |||  |  ||||| |||||||||||||| || ||    
T  33042491 gcttatcccc-ttgttaagagtcaatcgagcccttaacgcattcttgcattcctctactcccctatggtacttgtcctggcagattttgatgctcaaagc 33042589  T
Q  457 atctcctttaatgcacggagaaggaaaatgtctgtcgtcaat 498  Q
    ||| || |||||||| | || ||| | | |||||||||||||    
T  33042590 atcccccttaatgcatgaagtaggtagaggtctgtcgtcaat 33042631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 1930191 - 1930330
Alignment:
Q  4 ccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggta 102  Q
    ||||| ||||| |||| ||| || ||||| ||| |||| || || ||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  1930191 ccaaaagtacggtttcgagttggtccatcaatatcaattggagtcccaaccgcgctagcaatttccttcaacgttctctcccgccaatactcttgtggta 1930290  T
Q  103 attccatcaaacgaatccaaagcgaaacatgagtttgttt 142  Q
      |||| |||||| ||||||| ||| ||||| || |||||    
T  1930291 gctccaccaaacgtatccaaatcgatacatgtgtctgttt 1930330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 10697303 - 10697362
Alignment:
Q  86 ccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttg 145  Q
    |||||| ||||||||||| || | ||| ||||||||||| ||||||||||||||||||||    
T  10697303 ccaatattcttgcggtaactcaaccaatcgaatccaaagtgaaacatgagtttgtttttg 10697362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 10911072 - 10911131
Alignment:
Q  86 ccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttg 145  Q
    |||||| ||||||||||| || | ||| ||||||||||| ||||||||||||||||||||    
T  10911072 ccaatattcttgcggtaactcaaccaatcgaatccaaagtgaaacatgagtttgtttttg 10911131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 10697570 - 10697634
Alignment:
Q  356 ggtttatcccctttgttaagagtcaaacgcgcccttaacaccttcctgaaatcttctactccctt 420  Q
    |||||||| || ||||||||||||||||||||||| ||||| ||  || |||| |||||||||||    
T  10697570 ggtttatctcccttgttaagagtcaaacgcgccctcaacacatttgtgcaatcctctactccctt 10697634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 10693639 - 10693726
Alignment:
Q  4 ccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaat 90  Q
    ||||||||||||||||  ||||||||||| ||  |||| ||||| || || || ||||| |||||||||||  |||||||||||||||    
T  10693639 ccaaaggtacgatttcgcgtcggcccatcaatgtcaatcggtgtacctaccgcacttgctatttccttcaaaattctctcccgccaat 10693726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 538
Target Start/End: Complemental strand, 33312744 - 33312208
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    ||||||||||||||||||||||| || ||||| ||| ||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||| |    
T  33312744 tgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacggcacttgcaatttccttcaaggttctctcccgccaatactcttgtg 33312645  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    |||| |||| |||||| |||||||  || |||||||| ||||| ||| ||  ||  |||||||||  ||  ||||||| || ||||||||||||||||||    
T  33312644 gtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtct--ttagtccattgtgaaaatctcaacaaaccaggc 33312547  T
Q  200 ttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgc 299  Q
    || |||||||  |||  || |||||| |||||||||||||| ||| |||| || |||||||| |||||| | ||||| |||||||||||||||||||  |    
T  33312546 ttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatc 33312447  T
Q  300 ttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacacctt 399  Q
     |||| |||||||||||  |||  ||||||||  ||| |||||||| | | || ||||||| || ||||||||||||| ||| || ||||||||||||||    
T  33312446 ctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagcccttaacacctt 33312347  T
Q  400 cctga-aatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaaggaaaatgtctgtcgtcaat 498  Q
     |||| |||||||||||||||| |||| |||||||||||| ||||||||||| |||||||| ||||||||||| |||||||  ||  || |||| |||||    
T  33312346 -ctgacaatcttctactcccttacggtattcctcctgacatattttgatgctcaacgcatcacctttaatgcatggagaagtgaagggtttgtcatcaat 33312248  T
Q  499 ttcctttgtccctgcaagagctgctgcaaaggacaatgtt 538  Q
    | || |  |||  |||||||||||||||||||||| ||||    
T  33312247 taccgtcttcctcgcaagagctgctgcaaaggacattgtt 33312208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 16735 - 17211
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgtt-ccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgc 98  Q
    ||||||||  |||||||| ||||  | ||||| ||| ||||||||||| ||||| || ||||||||||||||||||    ||||||||||||| ||||||    
T  16735 tgaccaaaaatacgatttttagttagtccatcaatatcaataggtgtttccaaccgcacttgcaatttccttcaag----tctcccgccaatattcttgc 16830  T
Q  99 ggtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccagg 198  Q
    |||| ||| | |||||| |||||||| || |||||||| ||||| |||  |  ||  ||||||  |||||| ||||||| || |||||||||||||||||    
T  16831 ggtagttctaccaaacgtatccaaagtgatacatgagtctgtttctgcgtctgaaatttaaag--tctttggtccattgtgaaaatctcaacaaaccagg 16928  T
Q  199 cttaagatttactgtgcatgttgcccaaattttcttt-aaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcct 297  Q
    |||||||||||| || | |  |||||| ||||| ||| || || ||| |||| || || ||||| |||||| | | |||||||||| ||||||||||||     
T  16929 cttaagatttaccgtccctactgcccatattttttttgaagtcctccgccgagtcaaagtgaaagtcataataccacttaccaagaagcaccattttcca 17028  T
Q  298 gcttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacacc 397  Q
    ||||||||||||||||||||  ||  ||||||||  ||||||| || | | |||  ||||||| ||||||| |||||||||||| || |||||||||||     
T  17029 gcttgccgttgtcttccaaatttttccaattttaatactgagaacatgtgcagagtaaggtttgtccccttcgttaagagtcaatcgagcccttaacact 17128  T
Q  398 ttcctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaagg 480  Q
    || |   ||||||| | ||||||  ||| ||| || |||||||||||||||||||| ||||| ||||| ||||| ||||||||    
T  17129 tttcgacaatcttcgagtcccttatggtattcatcttgacagattttgatgcttaaagcatcacctttgatgcaaggagaagg 17211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 171 - 528
Target Start/End: Complemental strand, 12434216 - 12433859
Alignment:
Q  171 tccattgagagaatctcaacaaaccaggcttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaa 270  Q
    ||||||| || ||||| |||||||||||||| |||||||  ||||||| | |||| |||||||||||||| ||| | || || |||||||| |||||| |    
T  12434216 tccattgtgaaaatctgaacaaaccaggcttgagatttatcgtgcatgctacccatattttctttaaatcctccgctgagtcaaaatgaaagtcataata 12434117  T
Q  271 tcccttaccaagaggcaccattttcctgcttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttg 370  Q
     ||||| |||||||||||||||||||  | |||| || ||||| ||  |||  ||||||||  |||| ||||||| | |||| ||||||| || ||||||    
T  12434116 acccttgccaagaggcaccattttccatcatgcctttttcttctaagtcttatcaattttaatactgcgatcacgtgcagaataaggtttgtctcctttg 12434017  T
Q  371 ttaagagtcaaacgcgcccttaacaccttcctga-aatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatg 469  Q
    ||||||||||| || |||||||||||||| |||| |||||||||||||||| |||| |||||||||||| ||||||||||| |||||| | |||||||||    
T  12434016 ttaagagtcaaccgagcccttaacacctt-ctgacaatcttctactcccttacggtattcctcctgacatattttgatgctcaacgcaccacctttaatg 12433918  T
Q  470 cacggagaaggaaaatgtctgtcgtcaatttcctttgtccctgcaagagctgctgcaaa 528  Q
    || |||||||| ||  || |||| |||||| |  |  |||| |||||||||||||||||    
T  12433917 catggagaaggtaagggtttgtcatcaattactgtcttccccgcaagagctgctgcaaa 12433859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 3548399 - 3548877
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    |||||||| |||||||||||||| || ||||  ||| |||| ||||||||||| || |||||||||||||||||||| |||||||||||||||| |||||    
T  3548399 tgaccaaaagtacgatttctagttggtccattaatatcaattggtgttccaaccgcacttgcaatttccttcaaggtcctctcccgccaatacttttgcg 3548498  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    ||| ||| | |||||| |||||||| || |||||||||||||| ||| ||| ||  ||||||  || ||| || |||| || |||||||||||||||||     
T  3548499 gtagttctaccaaacgtatccaaagtgatacatgagtttgtttatgcgccagaaatttaaag--tccttggtctattgtgaaaatctcaacaaaccagga 3548596  T
Q  200 ttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgc 299  Q
    |||||||||||  | | |  ||||||  |||| | ||| |  | | |||| ||||| ||||| |||||| | ||||||| ||||||||||||||||  ||    
T  3548597 ttaagatttaccatccctactgcccattttttttataagttcttcgccgagtcgaagtgaaagtcataataccccttactaagaggcaccattttctagc 3548696  T
Q  300 ttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacacctt 399  Q
    ||||||||||||||||||  ||   |||||||  | |||||||||| | | |  ||||||| |||| ||||||| ||||||| || ||||||||||  ||    
T  3548697 ttgccgttgtcttccaaatttttctaattttaatattgagatcacgtgcaaagtaaggtttgtcccttttgttaggagtcaatcgagcccttaacatttt 3548796  T
Q  400 cctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaagg 480  Q
     |   ||||||| | || |||  ||| ||| || |||||||||||||||||||| ||||| ||||| ||||| ||||||||    
T  3548797 tcgacaatcttccagtcacttatggtattcatcttgacagattttgatgcttaaagcatcgcctttgatgcaaggagaagg 3548877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 18308308 - 18308444
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    ||||||||||||||||||||||| || ||||| ||| |||| ||||| ||||| || |||||||||||||||||||||||||||| ||||||||||||||    
T  18308308 tgaccaaaggtacgatttctagttggtccatcaatatcaatgggtgtaccaacggcacttgcaatttccttcaaggttctctcccaccaatactcttgcg 18308407  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagt 136  Q
    |||| |||| |||||| ||||||| ||| ||||||||    
T  18308408 gtaactccaccaaacgtatccaaatcgagacatgagt 18308444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 263 - 484
Target Start/End: Original strand, 18308444 - 18308665
Alignment:
Q  263 tcataaaatcccttaccaagaggcaccattttcctgcttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttat 362  Q
    |||||| | ||||||||||||||||||||||||   |  |||| |||  ||||||  ||| |||||||| ||||||||||||| | |||  ||||||| |    
T  18308444 tcataataccccttaccaagaggcaccattttcgaaccagccgctgttctccaaattttcccaattttaacactgagatcacgtgcagagtaaggtttgt 18308543  T
Q  363 cccctttgttaagagtcaaacgcgcccttaacaccttcctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcc 462  Q
    ||||||||||||||||||| || ||||||||| |||| ||  ||||||| | |||||| | || ||| || || || || ||||||||||| ||||| ||    
T  18308544 cccctttgttaagagtcaagcgagcccttaacgcctttctacaatcttccagtcccttactgtattcatcttggcaaatcttgatgcttaaagcatcacc 18308643  T
Q  463 tttaatgcacggagaaggaaaa 484  Q
    ||| ||||| ||||||||||||    
T  18308644 tttgatgcaaggagaaggaaaa 18308665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 12434364 - 12434228
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    |||||||||  |||||||||||| || || |||||| | ||||  || |||||||| ||||||| |||| |||||||||| |||||||||| |||||| |    
T  12434364 tgaccaaagaaacgatttctagttggtccgtcgatatctatagtagtaccaactgcacttgcaaattccatcaaggttctttcccgccaatgctcttgtg 12434265  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagt 136  Q
    |||  |||| ||||||||||||||||||| |||||||    
T  12434264 gtagctccaccaaacgaatccaaagcgaagcatgagt 12434228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 11777056 - 11777123
Alignment:
Q  66 tccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatg 133  Q
    |||||||||||||||||||||||||||||||||||||| || || |||  |||||||||||| |||||    
T  11777056 tccttcaaggttctctcccgccaatactcttgcggtaactcaataaaaaaaatccaaagcgatacatg 11777123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 13734787 - 13734702
Alignment:
Q  57 cttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagtttgttt 142  Q
    ||||| |||||||||||  ||||||| |||||||| || || ||||  |||| ||| ||||||||||| ||||||||||| |||||    
T  13734787 cttgctatttccttcaaaattctctctcgccaatattcctgtggtacctccaccaatcgaatccaaagtgaaacatgagtctgttt 13734702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 4 - 534
Target Start/End: Original strand, 20942377 - 20942906
Alignment:
Q  4 ccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggta 102  Q
    ||||||||||| |||||||| |||||||| ||  ||||||| || || || || || || |||||||||||||| |  ||||||||||||||||||||||    
T  20942377 ccaaaggtacggtttctagttggcccatcaatgtcaataggcgtgcccacggcactagctatttccttcaaggtacgttcccgccaatactcttgcggta 20942476  T
Q  103 attccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggctta 202  Q
    | |||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||   |||||| ||||||||||||| |  ||||  |||||||||    
T  20942477 actccaccaagcgaatccaaagcgaaacatgagtttgtttttgcaccaaaagtttaaa--atctttggtccattgagagaaccgtaacagtccaggctta 20942574  T
Q  203 agatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgcttg 302  Q
    || || || |||| || |||||| || | || ||||||||||||||| || || |||||||||||||| ||||| || ||||||| ||||||||  | ||    
T  20942575 aggttcaccgtgcctgctgcccatatctgctgtaaatcgtccaccgagtcaaagtgaaaatcataaaaaccctttcctagaggcagcattttccaacctg 20942674  T
Q  303 ccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacaccttcct 402  Q
    | |  |||| ||||| |||| ||||| |  | ||||| ||||| | ||||| |||||| || || ||| | ||||||| |||||| | ||| ||||| |     
T  20942675 ctgccgtctgccaaaacttcccaattctgtccctgagctcacgggaagaaagaggtttgtcacccttgctgagagtcagacgcgcacgtaaaaccttacg 20942774  T
Q  403 gaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaaggaaaatgtctgtcgtcaatttcc 502  Q
      |||| || |||||||||||||  ||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||  |||| || |||||| |     
T  20942775 acaatcgtcaactcccttccggtactcctcctgacagattttaatgcttaaagcatctcctttgatgcacggagaagggaagggtctttcatcaattacg 20942874  T
Q  503 tttgtccctgcaagagctgctgcaaaggacaa 534  Q
     |||||||||  ||||| || || ||||||||    
T  20942875 gttgtccctgtgagagcagcagcgaaggacaa 20942906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 3729255 - 3729388
Alignment:
Q  4 ccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggta 102  Q
    ||||||||||||||||  ||||| ||||| ||  |||| ||||| || ||||| ||||  |||||||||||  |||||||||||||||| ||||||||||    
T  3729255 ccaaaggtacgatttcacgtcggtccatcaatgtcaatcggtgtacctactgcacttgttatttccttcaaaattctctcccgccaatattcttgcggta 3729354  T
Q  103 attccatcaaacgaatccaaagcgaaacatgagt 136  Q
    | |||| ||| ||||||||||| |||||||||||    
T  3729355 actccaccaatcgaatccaaagtgaaacatgagt 3729388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 459
Target Start/End: Complemental strand, 17181506 - 17181326
Alignment:
Q  279 caagaggcaccattttcctgcttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagt 378  Q
    ||||||||||||||||||  | ||||| ||| ||||| |||||  |||||||    || |||||||| | | || | ||||| || ||||||||||| ||    
T  17181506 caagaggcaccattttccatcctgccgatgttttccatacctttccaattttgttgcttagatcacgtgcaaaatatggtttgtctcctttgttaagggt 17181407  T
Q  379 caaacgcgcccttaacaccttcctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatc 459  Q
    |||||||||||| ||||| ||| || |||| |||| |||| |  | |  || |||||||| ||||||||||| || |||||    
T  17181406 caaacgcgccctcaacacattcttgcaatcctctagtcccctatgatactcttcctgacatattttgatgctcaaagcatc 17181326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 37 - 436
Target Start/End: Complemental strand, 38162 - 37765
Alignment:
Q  37 caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagt 136  Q
    ||||||| || |||||||  ||||| ||||||||||| |||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  38162 caataggcgtgccaactgtacttgctatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaacgaatccaaagcgaaacatgagt 38063  T
Q  137 ttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggcttaagatttactgtgcatgttgcccaaattttcttta 236  Q
    |||||||||| |||| | |||||||||| |||| ||||||| |||||||  ||||| ||||| ||||||||||| ||||  | ||||||||| |||||||    
T  38062 ttgtttttgcgccaacaacttaaagtct-tttg-tccattgtgagaatcgtaacaatccaggtttaagatttaccgtgccggctgcccaaatgttcttta 37965  T
Q  237 aatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgcttgccgttgtcttccaaaccttcgcaattttagcact 336  Q
    |||| ||||||||||| || |||||||||||||| ||| |||| ||||||||||||||||  |||||| | |||||||||| || | ||| |||  | ||    
T  37964 aatcatccaccgattcaaagtgaaaatcataaaaacccctaccgagaggcaccattttccatcttgccctcgtcttccaaatctgcccaactttctccct 37865  T
Q  337 gagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacaccttcctgaaatcttctactcccttccggttttcctcctga 436  Q
    ||  ||||||| | ||| |||||| || || ||| ||||| |||||||||| | ||| || || ||  ||||||| |||||||||||||  |||||||||    
T  37864 gacttcacgcgcaaaaagaggtttgtcgcccttgctaagaatcaaacgcgcacgtaatactttactacaatcttcgactcccttccggtactcctcctga 37765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 37 - 436
Target Start/End: Original strand, 160617 - 161014
Alignment:
Q  37 caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagt 136  Q
    ||||||| || |||||||  ||||| ||||||||||| |||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  160617 caataggcgtgccaactgtacttgctatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaacgaatccaaagcgaaacatgagt 160716  T
Q  137 ttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggcttaagatttactgtgcatgttgcccaaattttcttta 236  Q
    |||||||||| |||| | |||||||||| |||| ||||||| |||||||  ||||| ||||| ||||||||||| ||||  | ||||||||| |||||||    
T  160717 ttgtttttgcgccaacaacttaaagtct-tttg-tccattgtgagaatcgtaacaatccaggtttaagatttaccgtgccggctgcccaaatgttcttta 160814  T
Q  237 aatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgcttgccgttgtcttccaaaccttcgcaattttagcact 336  Q
    |||| ||||||||||| || |||||||||||||| ||| |||| ||||||||||||||||  |||||| | |||||||||| || | ||| |||  | ||    
T  160815 aatcatccaccgattcaaagtgaaaatcataaaaacccctaccgagaggcaccattttccatcttgccctcgtcttccaaatctgcccaactttctccct 160914  T
Q  337 gagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacaccttcctgaaatcttctactcccttccggttttcctcctga 436  Q
    ||  ||||||| | ||| |||||| || || ||| ||||| |||||||||| | ||| || || ||  ||||||| |||||||||||||  |||||||||    
T  160915 gacttcacgcgcaaaaagaggtttgtcgcccttgctaagaatcaaacgcgcacgtaatactttactacaatcttcgactcccttccggtactcctcctga 161014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 1454 - 1988
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    |||||||| |||||||||||||| || ||||| ||| |||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||    
T  1454 tgaccaaaagtacgatttctagttggtccatcaatatcaatcggtgttccaaccgcacttgcaatttccttcaaggtcctctcccgccaatactcttgcg 1553  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    ||| ||| | |||||  |||||||| || |||||||||||||| ||| |   ||  ||||||  || ||| ||||||| || ||||||||||||||||||    
T  1554 gtagttctaccaaacatatccaaagtgatacatgagtttgtttctgcgcttgaaatttaaag--tccttggtccattgtgaaaatctcaacaaaccaggc 1651  T
Q  200 ttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgc 299  Q
    ||||||||||| || | |  |||||| ||||| ||||| || ||| |||| |  || ||||| |||||| | |||||||||||||||||||||||||  |    
T  1652 ttaagatttaccgttcctactgcccatattttttttaagtcctccgccgagttaaagtgaaagtcataataacccttaccaagaggcaccattttccatc 1751  T
Q  300 ttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacacctt 399  Q
    |||||  |||||||||||  ||  ||||||||  |||||||||||  | | |  | ||||| ||||||||||||||||||||  | ||||||||||| ||    
T  1752 ttgccactgtcttccaaatttttccaattttaatactgagatcacatgcacagtagggtttgtcccctttgttaagagtcaactgagcccttaacacttt 1851  T
Q  400 cctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaaggaaaatgtctgtcgtcaatt 499  Q
    ||   ||||||| | ||||||  ||| ||| || ||||||| |||||||||||| ||||| ||||| ||||| |||||||| ||| | ||||| ||  |     
T  1852 ccgacaatcttccagtcccttatggtattcttcttgacagaatttgatgcttaaagcatcgcctttgatgcaaggagaagggaaaggcctgtcatccgta 1951  T
Q  500 tcctttgtccctgcaagagctgctgcaaaggacaatg 536  Q
     | || ||||| |||||||||||||| || |||||||    
T  1952 acattagtccccgcaagagctgctgcgaaagacaatg 1988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 31372 - 31850
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    ||||||||  |||| |||| ||| |||||||| ||| | |||||||| ||||| || ||||||||||||||||| || |  |||||||||||||||||||    
T  31372 tgaccaaaattacggtttcgagttggcccatcaatatctataggtgtgccaacggcacttgcaatttccttcaatgtacattcccgccaatactcttgcg 31471  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    |||| || | |||||||||||||||||| ||||| ||||| ||||||||||| || || || ||| |||| ||||||||||||| |  ||||  |||||     
T  31472 gtaactcaaccaaacgaatccaaagcgatacatgcgtttgcttttgcaccaagagtttgaaatct-tttg-tccattgagagaaacgtaacagtccaggt 31569  T
Q  200 ttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgc 299  Q
    || ||||| || ||||| | |||||| | ||| | |||||| |||||||| || || |||||||||| |||||||||||| ||||| ||||||||||  |    
T  31570 ttgagattcaccgtgcaggctgcccagactttttgtaaatcatccaccgagtcaaagtgaaaatcatgaaatcccttacctagaggaaccattttccatc 31669  T
Q  300 ttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacacctt 399  Q
     |||||| |||||||||| |||  |||||||  | ||||||||||| | |||||  |||||||| || ||   ||| ||||| ||||| | ||| ||| |    
T  31670 ctgccgtcgtcttccaaatcttaccaattttctccctgagatcacgggcagaaattggtttatcgcccttagaaagcgtcaagcgcgctcgtaaaaccct 31769  T
Q  400 cctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaagg 480  Q
     ||  |||| || || ||||||||||  || |||||||| |||||||||||||| ||||| ||||| ||||||||||||||    
T  31770 actacaatcctcaacccccttccggtactcatcctgacaaattttgatgcttaaagcatcacctttgatgcacggagaagg 31850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 40683 - 41161
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    |||||||| ||||| |||| ||| |||||||| ||| | |||||||| ||||| || ||||||||||||||| | || |  |||||||||||||||||||    
T  40683 tgaccaaaagtacggtttcgagttggcccatcaatatctataggtgtgccaacggcacttgcaatttccttctatgtacattcccgccaatactcttgcg 40782  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    |||| |  | |||||||||||||||||| ||||| ||||| ||||||||||| || || || ||| |||| ||||||||||||| |  ||||| |||||     
T  40783 gtaactgaaccaaacgaatccaaagcgatacatgcgtttgcttttgcaccaagagtttgaaatct-tttg-tccattgagagaaacgtaacaatccaggt 40880  T
Q  200 ttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgc 299  Q
    |||||||| || ||||| | |||||| | ||| | |||||| |||| |||||| || |||||||||| |||||||||||| ||||| ||||||||||  |    
T  40881 ttaagattaaccgtgcaggctgcccagactttttgtaaatcatccatcgattcaaagtgaaaatcatgaaatcccttacctagaggaaccattttccatc 40980  T
Q  300 ttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacacctt 399  Q
     |||||| |||||| ||| |||  |||||||  | | ||||||||| | |||||  || || || || ||   || ||||||  |||||| ||| ||| |    
T  40981 ctgccgtcgtcttcgaaatcttaccaattttctccccgagatcacgggcagaaattggattgtcgcccttagaaatagtcaagagcgcccgtaaaaccct 41080  T
Q  400 cctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaagg 480  Q
     ||  |||| || || |||| |||||  || |||||||| |||||||||||||| ||||| ||||| ||||||||||||||    
T  41081 actacaatcctcaaccccctaccggtactcatcctgacaaattttgatgcttaaagcatcacctttgatgcacggagaagg 41161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 19584 - 19371
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    |||||||| | |||||||||||| || || |||||| | ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  19584 tgaccaaatgcacgatttctagttggtccgtcgatatctataggtgttccaattgcacttgcaatttccttcaaggttctctcccgccaatattcttgcg 19485  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| |||| |||||||||||||| ||||||||||||||    
T  19484 gtaactccaccaagcgaatccaaagcgaaacatgagtttgtttttgtgccaaaagcttaaagtct-tttg-tccattgagagaatttcaacaaaccaggc 19387  T
Q  200 ttaagatttactgtgc 215  Q
    || |||| ||| ||||    
T  19386 ttgagatgtaccgtgc 19371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 57 - 533
Target Start/End: Complemental strand, 12147 - 11673
Alignment:
Q  57 cttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagct 156  Q
    ||||||||||||||||| || | |||||||||||||||||||||||| || | |||||||||||||| ||| ||||| ||||| || ||||||||||| |    
T  12147 cttgcaatttccttcaatgtacgctcccgccaatactcttgcggtaactcaaccaaacgaatccaaaacgatacatgcgtttgcttctgcaccaaaagtt 12048  T
Q  157 taaagtctctttgctccattgagagaatctcaacaaaccaggcttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaa 256  Q
    | || ||| |||| ||||||||||||| |  ||||| ||||| || || ||||| ||||  |||||||| | ||| | ||||||  |||||||||| ||     
T  12047 tgaaatct-tttg-tccattgagagaaacgtaacaatccaggtttgaggtttaccgtgccagttgcccagactttttgtaaatcagccaccgattcaaag 11950  T
Q  257 tgaaaatcataaaatcccttaccaagaggcaccattttcctgcttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaag 356  Q
    |||||||||| ||| |||||||| ||||| |||||||| |  | |||||| |||||||||| |||  |||||||  | ||||| ||||| | |||||  |    
T  11949 tgaaaatcatgaaagcccttacctagaggaaccatttttcatcctgccgtcgtcttccaaatcttaccaattttctccctgagttcacgggcagaaattg 11850  T
Q  357 gtttatcccctttgttaagagtcaaacgcgcccttaacaccttcctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgc 456  Q
    |||| || || ||   ||||||||| ||||||| ||| ||| | ||  |||| || || ||||||||||  || ||||| || |||||||||||||| ||    
T  11849 gtttgtcgcccttagaaagagtcaagcgcgcccgtaaaaccctactacaatcctcaacccccttccggtactcatcctggcaaattttgatgcttaaagc 11750  T
Q  457 atctcctttaatgcacggagaaggaaaatgtctgtcgtcaatttcctttgtccctgcaagagctgctgcaaaggaca 533  Q
    ||| ||||| ||||| |||||||| ||| |||  ||||| ||  | ||| |||||| || ||| || ||||||||||    
T  11749 atcacctttgatgcatggagaagggaaaggtcgttcgtccatggcttttttccctgaaacagcagcagcaaaggaca 11673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 9372 - 8974
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    ||||||||  |||| ||||| || || ||||| ||| |||||||||| || ||  | ||||| || |||||||| || ||||||||||||||||||||||    
T  9372 tgaccaaacatacggtttctggttgggccatcaatatcaataggtgtacccacatcacttgctatctccttcaaagtcctctcccgccaatactcttgcg 9273  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    ||||||| ||||| || |||||||||||||| ||||| || |||||| |||| | |||||||||| |||| |||| ||||| |||||||| ||||| |||    
T  9272 gtaattcaatcaaccgtatccaaagcgaaacgtgagtctgcttttgcgccaacaacttaaagtct-tttg-tccactgagaaaatctcaataaacctggc 9175  T
Q  200 ttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgc 299  Q
    |||||||| |  |||| ||||||||| ||||||||||  || ||  |||| || |||||||||||||| || ||||| |||||||| ||||| ||||  |    
T  9174 ttaagattcatagtgcctgttgcccatattttctttaggtcttcagccgaatcaaaatgaaaatcatagaagcccttgccaagaggtaccatcttccaac 9075  T
Q  300 ttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacacctt 399  Q
      |||||||| |||||||      ||||||| | ||  |||||||||| |||||| || || || ||||| |||||||||||  ||||||||||| ||||    
T  9074 ccgccgttgttttccaaattgctccaattttggaacgaagatcacgcgcagaaaagggcttgtctcctttattaagagtcaagtgcgcccttaacgcctt 8975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 3582211 - 3582419
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    |||||||| |||||||||||||| || ||||| ||| |||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||||||    
T  3582211 tgaccaaaagtacgatttctagttggtccatcaatatcaataggtgttccaaccgcactttcaatttccttcaaggtcctctcccgccaatactcttgcg 3582310  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggc 199  Q
    ||| ||| | |||||| |||||||| || |||||||| ||||||||| ||  ||  ||||||  || ||| ||||||| || ||||||||||||| ||||    
T  3582311 gtagttctaccaaacgtatccaaagtgatacatgagtctgtttttgcgcctgaaatttaaag--tccttggtccattgtgaaaatctcaacaaacaaggc 3582408  T
Q  200 ttaagatttac 210  Q
    |||||||||||    
T  3582409 ttaagatttac 3582419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 171 - 420
Target Start/End: Original strand, 20972050 - 20972299
Alignment:
Q  171 tccattgagagaatctcaacaaaccaggcttaagatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaa 270  Q
    ||||||| || ||||||||||||| ||||||||||||||| || | |  |||||| ||||| ||||| || |||   || || || ||||| |||||| |    
T  20972050 tccattgtgaaaatctcaacaaactaggcttaagatttacagttcctactgcccatattttttttaagtcctccgttgagtcaaagtgaaagtcataata 20972149  T
Q  271 tcccttaccaagaggcaccattttcctgcttgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttg 370  Q
     |||||||||||||||||||||||||  |||||||||||||||||||  ||  ||||||||  |||||||||||| | |||  ||||||| |||||||||    
T  20972150 ccccttaccaagaggcaccattttccaacttgccgttgtcttccaaatttttccaattttaatactgagatcacgtgcagagtaaggtttgtcccctttg 20972249  T
Q  371 ttaagagtcaaacgcgcccttaacaccttcctgaaatcttctactccctt 420  Q
    ||||||||||| || ||||||||||| ||||   ||||||||| ||||||    
T  20972250 ttaagagtcaatcgagcccttaacactttccgacaatcttctagtccctt 20972299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 14679773 - 14679954
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    |||||||| ||||| || | ||| |||||||| ||| | |||||||| ||||| ||  |||||||||||||||| || |  |||||||||||||||||||    
T  14679773 tgaccaaaagtacggttgcgagttggcccatcaatatctataggtgtgccaacggcaattgcaatttccttcaatgtacgttcccgccaatactcttgcg 14679872  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaa 183  Q
    |||| || | |||||||||||||||||| ||||| ||||| || ||||||||||| || || ||| |||| |||||||||||||    
T  14679873 gtaactcaaccaaacgaatccaaagcgatacatgcgtttgcttctgcaccaaaagtttcaaatct-tttg-tccattgagagaa 14679954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 16313437 - 16313295
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgatac-aataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    |||||||||||||| ||||  ||||||||||| ||   ||| || || ||||| || |||||||||||||||||||||||||||||||||||||| ||||    
T  16313437 tgaccaaaggtacggtttcgtgtcggcccatctatgttaatcggagtaccaaccgcacttgcaatttccttcaaggttctctcccgccaatactcctgcg 16313338  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgttt 142  Q
    |||| |||| ||| | |||||||||  | |||||||| |||||    
T  16313337 gtaactccaccaagcaaatccaaagatatacatgagtctgttt 16313295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 18494431 - 18494289
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgatac-aataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    |||||||||||||| ||||  ||||||||||| ||   ||| || || ||||| || |||||||||||||||||||||||||||||||||||||| ||||    
T  18494431 tgaccaaaggtacggtttcgtgtcggcccatctatgttaatcggagtaccaaccgcacttgcaatttccttcaaggttctctcccgccaatactcctgcg 18494332  T
Q  100 gtaattccatcaaacgaatccaaagcgaaacatgagtttgttt 142  Q
    |||| |||| ||| | |||||||||  | |||||||| |||||    
T  18494331 gtaactccaccaagcaaatccaaagatatacatgagtctgttt 18494289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 20971923 - 20972042
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcg 99  Q
    ||||||||  ||||||||||||| || ||||| ||| |||||||||| |     || |||||||||||||||||||| |||||||||||||| |||||||    
T  20971923 tgaccaaaaatacgatttctagttggtccatcaatatcaataggtgtcc-----gcacttgcaatttccttcaaggtcctctcccgccaatattcttgcg 20972017  T
Q  100 gtaattccatcaaacgaatccaaag 124  Q
    ||||||| | |||||| ||||||||    
T  20972018 gtaattctaccaaacgtatccaaag 20972042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 19829793 - 19829870
Alignment:
Q  56 gcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatg 133  Q
    |||||| || |||||||| |||||||||||||||||||| |||||||| || | ||| ||||||||||| || |||||    
T  19829793 gcttgcgatctccttcaaagttctctcccgccaatactcctgcggtaactcaaccaagcgaatccaaagtgatacatg 19829870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 301 - 532
Target Start/End: Complemental strand, 93818 - 93587
Alignment:
Q  301 tgccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacaccttc 400  Q
    |||| |||||||||||  |||  ||||||||  ||| |||||||| | |||| ||||||| || ||||||||||||||||| || |||||||||||||||    
T  93818 tgccattgtcttccaagtcttatcaattttaatacttagatcacgtgcagaataaggtttgtctcctttgttaagagtcaaccgagcccttaacaccttc 93719  T
Q  401 ctgaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatctcctttaatgcacggagaaggaaaatgtctgtcgtcaattt 500  Q
    |   |||||||||||||||| |||| |||||||||||||||||||||||| |||||| | ||||||||||| |||||||| ||  || |||| ||||||     
T  93718 cgacaatcttctactcccttacggtattcctcctgacagattttgatgctcaacgcaccacctttaatgcatggagaagggaagggtttgtcatcaatta 93619  T
Q  501 cctttgtccctgcaagagctgctgcaaaggac 532  Q
    |  |  || | |||||||||||||||||||||    
T  93618 ctgtcttctccgcaagagctgctgcaaaggac 93587  T

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Target: scaffold0281 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 37 - 467
Target Start/End: Complemental strand, 5753 - 5325
Alignment:
Q  37 caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagt 136  Q
    |||||||||| || || || ||||||||||||||||  ||||| ||||||||||||||||| || || ||||  || || ||||||||||||||||||||    
T  5753 caataggtgtacccacggcacttgcaatttccttcagagttctttcccgccaatactcttgaggcaactccactaaccggatccaaagcgaaacatgagt 5654  T
Q  137 ttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggcttaagatttactgtgcatgttgcccaaattttcttta 236  Q
    ||| || ||   ||||||||||||||| ||| | ||||||| ||||| | ||||| ||| ||||||||||| || ||||  |  |||||||||||||| |    
T  5653 ttgcttctgtgtcaaaagcttaaagtc-cttag-tccattgtgagaagcgcaacagaccgggcttaagattgacggtgccagcagcccaaattttcttca 5556  T
Q  237 aatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgcttgccgttgtcttccaaaccttcgcaattttagcact 336  Q
    |||| |||  ||| || ||||| ||||| ||||| ||||||||||| |||||||||||||  | ||| |  ||||||||||  ||| ||||| ||||  |    
T  5555 aatcctccgacgactcaaaatggaaatcgtaaaaccccttaccaaggggcaccattttccaacctgctgaagtcttccaaagtttcccaattgtagcgtt 5456  T
Q  337 gagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacaccttcctgaaatcttctactcccttccggttttcctcctga 436  Q
    |||||| | || |||| |||  || || || ||| ||||||||| ||| || || ||||||||  |  |||| || || || ||||| | |||||||| |    
T  5455 gagatccctcgcagaataagacttgtcgcccttgctaagagtcagacgagctctcaacacctttttacaatcctccacccctttccgatattcctcctaa 5356  T
Q  437 cagattttgatgcttaacgcatctcctttaa 467  Q
    || ||||||||||| |  |||||||||||||    
T  5355 caaattttgatgctaagagcatctcctttaa 5325  T

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Target: scaffold0012 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 315
Target Start/End: Original strand, 61300 - 61610
Alignment:
Q  4 ccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggta 102  Q
    ||||| ||||| |||| ||| || ||||| ||| |||| || || ||||| || ||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  61300 ccaaaagtacggtttcgagtgggtccatcaatatcaattggagtcccaaccgcacttgcaatttctttcaacgttctctcccgccaatactcttgtggta 61399  T
Q  103 attccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggctta 202  Q
    | |||| |||||| ||||||||||| ||||| || || |||||   |  |  ||| || || ||| | |||| ||||||||||  | |||||| |||||     
T  61400 actccaccaaacgtatccaaagcgatacatgtgtctgcttttgtgtctgatacttgaaatc-cttag-tccactgagagaatcgtagcaaacccggcttg 61497  T
Q  203 agatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgcttg 302  Q
    || || | ||||| |  |||||| |||||| |  |||| ||| ||||||| ||  ||||||||||| | |||||||||||||||||||||||||  |  |    
T  61498 aggttaattgtgcctactgcccatattttcctataatcatccgccgattcaaagagaaaatcataataccccttaccaagaggcaccattttccaaccag 61597  T
Q  303 ccgttgtcttcca 315  Q
    |||||||||||||    
T  61598 ccgttgtcttcca 61610  T

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Target: scaffold0363 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 6999 - 7138
Alignment:
Q  4 ccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggta 102  Q
    ||||||||||||||||  ||||| ||||| ||  |||| ||||| || || |||||||| |||||||||||  |||||||||||||||| || |||||||    
T  6999 ccaaaggtacgatttcgcgtcggtccatcaatgtcaatcggtgtacctaccgcgcttgctatttccttcaaaattctctcccgccaatattcctgcggta 7098  T
Q  103 attccatcaaacgaatccaaagcgaaacatgagtttgttt 142  Q
    | |||| ||| ||||||||||| ||||||||||| |||||    
T  7099 actccaccaatcgaatccaaagtgaaacatgagtctgttt 7138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 14411712 - 14411573
Alignment:
Q  4 ccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggta 102  Q
    ||||||||||||||||  ||||| ||||| ||  |||| ||||| || || || ||||| |||||||||||  |||||||||||||||| || |||||||    
T  14411712 ccaaaggtacgatttcgcgtcggtccatcaatgtcaatcggtgtacctaccgctcttgctatttccttcaaaattctctcccgccaatattcctgcggta 14411613  T
Q  103 attccatcaaacgaatccaaagcgaaacatgagtttgttt 142  Q
    | |||| ||| ||||||||||| ||||||||||| |||||    
T  14411612 actccaccaatcgaatccaaagtgaaacatgagtctgttt 14411573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 459
Target Start/End: Complemental strand, 21591535 - 21591081
Alignment:
Q  4 ccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggta 102  Q
    ||||||||||||||||  ||||| ||||| ||  |||| ||||| || ||  | ||||| |||||||||||  |||||  ||||||||| ||||||||||    
T  21591535 ccaaaggtacgatttcgcgtcggtccatcaatgtcaatcggtgtacctaccacacttgctatttccttcaaaattctcaaccgccaatattcttgcggta 21591436  T
Q  103 attccatcaaacgaatccaaagcgaaacatgagtttgtttttgcaccaaaagcttaaagtctctttgctccattgagagaatctcaacaaaccaggctta 202  Q
    | |||| ||| ||||||||||| ||||||||||| ||||| ||  | | |   || |||  |||||| ||||||| || || || |||||||| |||||     
T  21591435 actccaccaatcgaatccaaagtgaaacatgagtctgtttctgagcaagatatttgaag--tctttggtccattgtgaaaaccttaacaaacctggcttg 21591338  T
Q  203 agatttactgtgcatgttgcccaaattttctttaaatcgtccaccgattcgaaatgaaaatcataaaatcccttaccaagaggcaccattttcctgcttg 302  Q
    || || || |||| || |||||| |||||  | |  || ||| |||| || || ||||| |||||| | || || || ||||||||||||||||  | ||    
T  21591337 aggttcaccgtgcctgctgcccatatttttctaaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccattttccatcctg 21591238  T
Q  303 ccgttgtcttccaaaccttcgcaattttagcactgagatcacgcggagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacaccttcct 402  Q
    ||| ||| ||||| |||||  |||||||    || |||||||| | | || | ||||| || ||||||||||| |||||||| ||||| ||||| ||| |    
T  21591237 ccgatgttttccatacctttccaattttgttgcttagatcacgtgcaaaatatggtttgtctcctttgttaagggtcaaacgagccctcaacacattctt 21591138  T
Q  403 gaaatcttctactcccttccggttttcctcctgacagattttgatgcttaacgcatc 459  Q
    | |||| |||| |||| |  | |  || |||||||| ||||||||||| || |||||    
T  21591137 gcaatcctctagtcccctatgatactcttcctgacatattttgatgctcaaagcatc 21591081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 23600217 - 23600151
Alignment:
Q  76 ttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcgaaacatgagtttgttt 142  Q
    |||| |||| |||||| || |||||||| |||| ||||||||||||||| ||||||||| |||||||    
T  23600217 ttctttcccaccaatattcctgcggtaactccaccaaacgaatccaaagtgaaacatgattttgttt 23600151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4207549 - 4207602
Alignment:
Q  1 tgaccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaact 53  Q
    ||||||||||||| ||||||||| | |||||||||| |||||||||||||||||    
T  4207549 tgaccaaaggtaccatttctagttgacccatcgatatcaataggtgttccaact 4207602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 17458778 - 17458699
Alignment:
Q  48 ccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagcga 127  Q
    ||||| |||||||| ||||||||| | ||||||||| ||||||| || |||||||| || | |||  |||||||||||||    
T  17458778 ccaaccgcgcttgcgatttccttcgaagttctctcctgccaatattcctgcggtaactcaaccaagtgaatccaaagcga 17458699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 18694148 - 18694071
Alignment:
Q  48 ccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagc 125  Q
    ||||| || ||| ||||||| ||||| ||||| |||||||||||||| |||||||| || | |||||| ||| |||||    
T  18694148 ccaaccgcactttcaatttctttcaaagttctttcccgccaatactcatgcggtaactcaaccaaacgtatctaaagc 18694071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 10498 - 10368
Alignment:
Q  4 ccaaaggtacgatttctagtcggcccatcgata-caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggta 102  Q
    ||||| ||||| |||| ||| || ||||| ||| |||| || || ||||| || ||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  10498 ccaaaagtacggtttcgagtgggtccatcaatatcaattggagtcccaaccgcacttgcaatttctttcaacgttctctcccgccaatactcttgtggta 10399  T
Q  103 attccatcaaacgaatccaaagcgaaacatg 133  Q
    | |||| |||| | ||||||||||| |||||    
T  10398 actccaccaaatgtatccaaagcgatacatg 10368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 51093 - 51005
Alignment:
Q  37 caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagc 125  Q
    ||||||| || ||||| || ||| ||||||| ||||| ||||| |||||||||||||| |||||||| || | |||||| ||| |||||    
T  51093 caataggagtgccaaccgcactttcaatttctttcaaagttctttcccgccaatactcatgcggtaactcaaccaaacgtatctaaagc 51005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 63632 - 63544
Alignment:
Q  37 caataggtgttccaactgcgcttgcaatttccttcaaggttctctcccgccaatactcttgcggtaattccatcaaacgaatccaaagc 125  Q
    ||||||| || ||||| || ||| ||||||| ||||| ||||| |||||||||||||| |||||||| || | |||||| ||| |||||    
T  63632 caataggagtgccaaccgcactttcaatttctttcaaagttctttcccgccaatactcatgcggtaactcaaccaaacgtatctaaagc 63544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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