View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19320_low_6 (Length: 484)
Name: NF19320_low_6
Description: NF19320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19320_low_6 |
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| [»] scaffold0020 (1 HSPs) |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 444
Target Start/End: Complemental strand, 9607981 - 9607554
Alignment:
| Q |
11 |
cagagagcattcaacctttcaaactatatctatcccacatggtgttatggggtcacattacatttactataaactttcacaggctctttagcttatgatg |
110 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9607981 |
cagagagcattcaacctttcaaactatatc----ccacatggtgttatggggtcacattacatttactataaactttcacaggctctttagcttatgatg |
9607886 |
T |
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| Q |
111 |
attcatcaaattatatgatatcatcaacttcagaatcacatggctactcttatatattacaaagtactactaccnnnnnnnactcatacaaagtactacc |
210 |
Q |
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| T |
9607885 |
attcatcaaattatatgatatcatcaacttcagaatcacatggctactcatatatattacaaagtactactacctttttttactcatacaaagtactacc |
9607786 |
T |
|
| Q |
211 |
ttgttactctatagtctatacacatcaacttgtgaccaaaactttaatcatatgcttagtgtgtgtttggtacagcgtttgcaaaacggtgtttgataaa |
310 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
9607785 |
ttgttactctatagtctatacacgtcaacttgtgaccaaaactttaatcataggctta--gtgtgtttggtacagcgtttgcaaaacggtgtttgatgaa |
9607688 |
T |
|
| Q |
311 |
aatcacggcnnnnnnnntcacgttagcaaagaagttagtatttagaacttttaaaaatcac-gcaaaaacacgttgagatacgtgcaaacgttcttttgt |
409 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||| || ||||||||| ||||||| |
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| T |
9607687 |
aatcacggcaaaaaaac-cacgttagcaaagaagttagtatttagagcttctaaaaattacggcaaaaacacgttgagaaacatgcaaacgtgcttttgt |
9607589 |
T |
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| Q |
410 |
gtgtcgcaaacaggaaaccaaacacacacttaaaa |
444 |
Q |
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| T |
9607588 |
gtgtcgcaaacgggaaaccaaacacacacttaaaa |
9607554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 435
Target Start/End: Original strand, 43292837 - 43292879
Alignment:
| Q |
393 |
tgcaaacgttcttttgtgtgtcgcaaacaggaaaccaaacaca |
435 |
Q |
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| T |
43292837 |
tgcaaacgtgcttttgtgtggtgcaaacaggaaaccaaacaca |
43292879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 443
Target Start/End: Original strand, 622048 - 622152
Alignment:
| Q |
340 |
agaagttagtatttagaacttttaaaaatcacg-caaaaacacgttgagatacgtgcaaacgttcttttgtgtgtcgcaaacaggaaaccaaacacacac |
438 |
Q |
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||||| |||||||| || ||||||||||||||| ||||||| | | || || |||||| || ||||||| ||| |||||||||||||||||| ||||| |
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| T |
622048 |
agaagctagtatttggagcttttaaaaatcacggcaaaaacgcatcgaataacatgcaaatgtgcttttgtatgttgcaaacaggaaaccaaacccacac |
622147 |
T |
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| Q |
439 |
ttaaa |
443 |
Q |
| |
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||||| |
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| T |
622148 |
ttaaa |
622152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 155110 - 155151
Alignment:
| Q |
269 |
gtgtgtgtttggtacagcgtttgcaaaacggtgtttgataaa |
310 |
Q |
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| T |
155110 |
gtgtttgtttggtacagggtttgcaaaacggtgtttgataaa |
155151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 318
Target Start/End: Complemental strand, 49378941 - 49378898
Alignment:
| Q |
275 |
gtttggtacagcgtttgcaaaacggtgtttgataaaaatcacgg |
318 |
Q |
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| T |
49378941 |
gtttggtacaacttttgcaaaacggagtttgataaaaatcacgg |
49378898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 441
Target Start/End: Complemental strand, 49511 - 49461
Alignment:
| Q |
391 |
cgtgcaaacgttcttttgtgtgtcgcaaacaggaaaccaaacacacactta |
441 |
Q |
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||||||||||| ||||||| | | |||||| |||||||||||||||||||| |
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| T |
49511 |
cgtgcaaacgtgcttttgtttattgcaaacgggaaaccaaacacacactta |
49461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 12429729 - 12429774
Alignment:
| Q |
274 |
tgtttggtacagcgtttgcaaaacggtgtttgataaaaatcacggc |
319 |
Q |
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| T |
12429729 |
tgtttggtacagtgtttgcaaaacagtgtttgatggaaatcacggc |
12429774 |
T |
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