View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19320_low_7 (Length: 480)

Name: NF19320_low_7
Description: NF19320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19320_low_7
NF19320_low_7
[»] scaffold0386 (3 HSPs)
scaffold0386 (1-97)||(1138-1234)
scaffold0386 (143-197)||(1279-1333)
scaffold0386 (148-198)||(691-741)
[»] chr4 (18 HSPs)
chr4 (1-97)||(33878719-33878815)
chr4 (330-447)||(46550706-46550823)
chr4 (330-437)||(17056615-17056722)
chr4 (330-444)||(47541809-47541925)
chr4 (330-437)||(41464802-41464911)
chr4 (330-437)||(52920087-52920197)
chr4 (143-197)||(33878620-33878674)
chr4 (337-432)||(15827131-15827229)
chr4 (330-428)||(47833504-47833603)
chr4 (148-198)||(33879203-33879253)
chr4 (248-298)||(46550626-46550676)
chr4 (330-438)||(36364868-36364972)
chr4 (330-437)||(39503504-39503615)
chr4 (330-437)||(20679841-20679951)
chr4 (340-425)||(46381481-46381568)
chr4 (252-298)||(47541735-47541781)
chr4 (254-296)||(47732466-47732508)
chr4 (330-402)||(42969971-42970043)
[»] chr1 (16 HSPs)
chr1 (330-437)||(16253029-16253136)
chr1 (330-437)||(24241478-24241585)
chr1 (330-437)||(41942781-41942888)
chr1 (330-437)||(21356794-21356901)
chr1 (330-437)||(34773420-34773528)
chr1 (330-437)||(39744169-39744276)
chr1 (339-443)||(38746028-38746133)
chr1 (330-437)||(2344969-2345077)
chr1 (359-437)||(48503922-48504000)
chr1 (245-298)||(24241614-24241667)
chr1 (252-296)||(34773345-34773389)
chr1 (335-437)||(7101359-7101464)
chr1 (254-295)||(38745959-38746000)
chr1 (254-294)||(8971569-8971609)
chr1 (254-298)||(41942916-41942960)
chr1 (254-298)||(16253166-16253210)
[»] chr8 (21 HSPs)
chr8 (1-97)||(38460526-38460622)
chr8 (330-441)||(42056676-42056787)
chr8 (253-449)||(30208187-30208380)
chr8 (342-441)||(39402038-39402140)
chr8 (330-442)||(5594779-5594891)
chr8 (330-436)||(1162117-1162222)
chr8 (330-437)||(40719895-40720005)
chr8 (330-442)||(35179155-35179268)
chr8 (330-440)||(31333162-31333273)
chr8 (330-419)||(42921385-42921474)
chr8 (148-197)||(38460880-38460929)
chr8 (143-197)||(38460427-38460481)
chr8 (255-295)||(5594922-5594962)
chr8 (330-393)||(30362018-30362082)
chr8 (337-437)||(36132676-36132776)
chr8 (254-298)||(39401955-39401999)
chr8 (254-298)||(40719821-40719865)
chr8 (252-298)||(1162043-1162089)
chr8 (254-298)||(34173559-34173603)
chr8 (254-298)||(34514581-34514625)
chr8 (251-298)||(35179296-35179341)
[»] chr5 (26 HSPs)
chr5 (1-97)||(13869339-13869435)
chr5 (1-97)||(27640973-27641069)
chr5 (330-437)||(33758794-33758901)
chr5 (336-418)||(23151436-23151518)
chr5 (330-442)||(2976446-2976556)
chr5 (330-428)||(34849451-34849550)
chr5 (330-427)||(30319817-30319915)
chr5 (330-437)||(20524604-20524711)
chr5 (330-437)||(10719746-10719854)
chr5 (330-417)||(37872201-37872291)
chr5 (143-193)||(13869240-13869290)
chr5 (143-193)||(27640875-27640925)
chr5 (400-440)||(37872302-37872342)
chr5 (148-197)||(13869825-13869874)
chr5 (332-444)||(8026460-8026577)
chr5 (330-429)||(3454259-3454358)
chr5 (253-296)||(36442660-36442703)
chr5 (330-388)||(42285218-42285277)
chr5 (148-197)||(27641429-27641478)
chr5 (254-298)||(10719883-10719927)
chr5 (251-298)||(3454387-3454434)
chr5 (252-298)||(16778273-16778319)
chr5 (255-297)||(21239003-21239045)
chr5 (254-295)||(20654461-20654502)
chr5 (254-298)||(23145929-23145973)
chr5 (254-298)||(37872129-37872173)
[»] chr3 (18 HSPs)
chr3 (330-437)||(44880254-44880361)
chr3 (1-97)||(49851273-49851369)
chr3 (330-441)||(1994850-1994961)
chr3 (330-437)||(22220210-22220318)
chr3 (330-436)||(2008400-2008508)
chr3 (330-442)||(22831174-22831286)
chr3 (330-437)||(39056875-39056981)
chr3 (254-298)||(25199079-25199123)
chr3 (361-437)||(26466362-26466438)
chr3 (254-297)||(22220346-22220389)
chr3 (143-197)||(49851417-49851471)
chr3 (148-197)||(49850835-49850884)
chr3 (253-297)||(2008537-2008581)
chr3 (255-295)||(22831103-22831143)
chr3 (330-417)||(28297695-28297782)
chr3 (248-298)||(45805449-45805499)
chr3 (380-437)||(45805583-45805640)
chr3 (253-298)||(1994780-1994825)
[»] chr7 (14 HSPs)
chr7 (330-441)||(8541427-8541539)
chr7 (330-437)||(34998528-34998637)
chr7 (1-97)||(29735565-29735661)
chr7 (330-437)||(10544991-10545100)
chr7 (358-437)||(39187986-39188065)
chr7 (330-437)||(45627414-45627524)
chr7 (380-432)||(32676800-32676852)
chr7 (391-447)||(15878797-15878853)
chr7 (252-298)||(8541565-8541611)
chr7 (143-190)||(29735710-29735759)
chr7 (148-197)||(29735117-29735166)
chr7 (254-298)||(30783412-30783456)
chr7 (254-298)||(34998665-34998709)
chr7 (330-389)||(40076693-40076753)
[»] chr2 (16 HSPs)
chr2 (330-437)||(3870024-3870135)
chr2 (330-437)||(11028779-11028887)
chr2 (344-437)||(36400857-36400952)
chr2 (330-443)||(28734070-28734183)
chr2 (330-437)||(37721449-37721557)
chr2 (330-437)||(38879517-38879625)
chr2 (330-437)||(3647418-3647526)
chr2 (254-298)||(3870164-3870208)
chr2 (330-436)||(30706149-30706258)
chr2 (254-298)||(34480055-34480099)
chr2 (330-437)||(6512079-6512191)
chr2 (254-297)||(36400993-36401036)
chr2 (330-391)||(3949317-3949378)
chr2 (254-298)||(30706078-30706122)
chr2 (253-298)||(37721585-37721630)
chr2 (254-298)||(9009119-9009163)
[»] scaffold0095 (2 HSPs)
scaffold0095 (342-441)||(35362-35464)
scaffold0095 (254-298)||(35503-35547)
[»] chr6 (4 HSPs)
chr6 (330-437)||(2141240-2141348)
chr6 (330-442)||(7080148-7080262)
chr6 (343-437)||(25336928-25337023)
chr6 (256-296)||(17852650-17852690)
[»] scaffold0288 (2 HSPs)
scaffold0288 (358-437)||(18084-18163)
scaffold0288 (254-298)||(17977-18022)
[»] scaffold0009 (1 HSPs)
scaffold0009 (358-445)||(25680-25767)
[»] scaffold1339 (1 HSPs)
scaffold1339 (330-437)||(57-165)


Alignment Details
Target: scaffold0386 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 1138 - 1234
Alignment:
Q  1 tgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1138 tgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 1234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 1279 - 1333
Alignment:
Q  143 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 197  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  1279 tgacctgtcatgattttattggatgtttgtaagtgtcacatgttatgtacgtttc 1333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 741 - 691
Alignment:
Q  148 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttcc 198  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  741 tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgtttcc 691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 33878815 - 33878719
Alignment:
Q  1 tgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33878815 tgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 33878719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 330 - 447
Target Start/End: Original strand, 46550706 - 46550823
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  46550706 aataataaagagaaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtatgtgtttaaacattattgatttggtcttgtgaccatg 46550805  T
Q  430 gaagaatatctccttatt 447  Q
    ||||||||| || |||||    
T  46550806 gaagaatatttcattatt 46550823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 17056722 - 17056615
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt-tatgtgtgtattcaaacattattgatttggtcttgtgaccat 428  Q
    ||||||||||||||||||||||||||  |||||| |||||||  |||| ||| |||| |||||||||||||||||| |||||||||||||||||||||||    
T  17056722 aataataaagaggaaattgataaaaaa-atgattaaatattttaaggacaattttttatatgtgtgtattcaaacactattgatttggtcttgtgaccat 17056624  T
Q  429 ggaagaata 437  Q
    |||||||||    
T  17056623 ggaagaata 17056615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 330 - 444
Target Start/End: Original strand, 47541809 - 47541925
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacca 427  Q
    ||||||||  |||||||||||||||| ||||||||||||||| ||||| ||||||||||  ||||||| | |||| |||||||||||| |||||||| ||    
T  47541809 aataataagaaggaaattgataaaaaagatgattgaatattttgaggaaaatctttttatgtgtgtgtgtccaaatattattgatttgatcttgtgatca 47541908  T
Q  428 tggaagaatatctcctt 444  Q
    || ||||||||||||||    
T  47541909 tgaaagaatatctcctt 47541925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 41464802 - 41464911
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 427  Q
    ||||||||||| |||||||||||||| ||||||||| ||||| || |||||||||||||||||||||  || ||  |||||||||||| |||||||||||    
T  41464802 aataataaagaagaaattgataaaaaagatgattgagtattttgaagagaatctttttatgtgtgtatgtttaagtattattgatttgatcttgtgacca 41464901  T
Q  428 tggaagaata 437  Q
    || |||||||    
T  41464902 tgaaagaata 41464911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 52920087 - 52920197
Alignment:
Q  330 aataataaagaggaaattgat-aaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacc 426  Q
    |||||||||||| |||||||| |||||  ||||||||||||||  | |  ||||||||||  | | |||||| |||||||||||||||||||||||||||    
T  52920087 aataataaagagaaaattgataaaaaaaaatgattgaatatttttaagtaaatctttttatttatatgtatttaaacattattgatttggtcttgtgacc 52920186  T
Q  427 atggaagaata 437  Q
    |||||||||||    
T  52920187 atggaagaata 52920197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 33878674 - 33878620
Alignment:
Q  143 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 197  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  33878674 tgacctgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgtttc 33878620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 15827131 - 15827229
Alignment:
Q  337 aagaggaaattgat-aaaaatgatgattgaatatttagaggagaatctttttatgtg--tgtattcaaacattattgatttggtcttgtgaccatggaa 432  Q
    ||||| |||||||| |||||  || ||||||||||| ||  ||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||    
T  15827131 aagagaaaattgatgaaaaaaaataattgaatattttgacaagaatctttttatgtgtgtgtattcaaatattattgattcggtcttgtgaccatggaa 15827229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 428
Target Start/End: Complemental strand, 47833603 - 47833504
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 427  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||||   ||||||||||||||||  | ||| || ||| |||||||||||| |||||    
T  47833603 aataataaagaggaaattgataaaa-taatgattgaatattttgaggatggtctttttatgtgtgtatgtccaaccactatagatttggtcttgcgacca 47833505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 33879203 - 33879253
Alignment:
Q  148 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttcc 198  Q
    ||||| ||||||||||||||||||||| || ||||||||||||||||||||    
T  33879203 tgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttcc 33879253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 46550626 - 46550676
Alignment:
Q  248 ttctatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    ||||| |||||||| ||||||||||||| ||||||||||||||||||||||    
T  46550626 ttctaagagaaattctaatatggtcacaagaccaaagaaaaagtgtttggt 46550676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 438
Target Start/End: Original strand, 36364868 - 36364972
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    |||| ||||||| |||||||||||||| ||||    ||||||  ||||  || ||||||| ||||| | ||||||||||||||||||||||| |||||||    
T  36364868 aatagtaaagagaaaattgataaaaataatga----atattttaaggaccatatttttatatgtgtgtccaaacattattgatttggtcttgcgaccatg 36364963  T
Q  430 gaagaatat 438  Q
     || |||||    
T  36364964 caacaatat 36364972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 39503504 - 39503615
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatga--ttgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgac 425  Q
    ||||||||||||||||||||||||||  |  |  || |||||||  | ||  ||||||||||||||  || |||||||| ||||||||| ||||||||||    
T  39503504 aataataaagaggaaattgataaaaaaaaaaaaattaaatattttaaagatcatctttttatgtgtatgtgttcaaacactattgatttagtcttgtgac 39503603  T
Q  426 catggaagaata 437  Q
    ||| ||||||||    
T  39503604 catagaagaata 39503615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 20679841 - 20679951
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt---tatgtgtgtattcaaacattattgatttggtcttgtgacc 426  Q
    ||||||||||||||||||||||||||  || |||||||||||  | ||  || ||||   | ||||||| | |||||| |||||||||| ||||| ||||    
T  20679841 aataataaagaggaaattgataaaaaaaataattgaatattttaaagaccattttttttatgtgtgtgtgtccaaacactattgatttgatcttgagacc 20679940  T
Q  427 atggaagaata 437  Q
    ||| |||||||    
T  20679941 atgaaagaata 20679951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 425
Target Start/End: Complemental strand, 46381568 - 46381481
Alignment:
Q  340 aggaaattgataaaaatgatgattgaatatttagaggagaatctttttatg--tgtgtattcaaacattattgatttggtcttgtgac 425  Q
    ||||||||||||||||  |||||||||| |||  |||| ||||| ||||||  |||||  ||||||| |||| |||||||||||||||    
T  46381568 aggaaattgataaaaaaaatgattgaatgtttttaggataatctctttatgtatgtgtgctcaaacactatttatttggtcttgtgac 46381481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 47541735 - 47541781
Alignment:
Q  252 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||||| ||||||||||||  || |||||||||||||||||||    
T  47541735 atgagaaattctaatatggtcacgagatcaaagaaaaagtgtttggt 47541781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 47732508 - 47732466
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttg 296  Q
    |||||||| |||||||||||||||| |||||||||| ||||||    
T  47732508 gagaaattctaatatggtcacaggatcaaagaaaaattgtttg 47732466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 402
Target Start/End: Complemental strand, 42970043 - 42969971
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaa 402  Q
    |||||||||||  |||||||||||||  | ||||||||||||  |||| |||||||||||  |||| ||||||    
T  42970043 aataataaagataaaattgataaaaaaaaagattgaatattttaaggataatctttttatacgtgtgttcaaa 42969971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 16253136 - 16253029
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||    
T  16253136 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtctccaaacattattgatttggtcttgtgaacatg 16253037  T
Q  430 gaagaata 437  Q
    ||||||||    
T  16253036 gaagaata 16253029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 24241585 - 24241478
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  24241585 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtcatgtgaccatg 24241486  T
Q  430 gaagaata 437  Q
    ||||||||    
T  24241485 gaagaata 24241478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 41942888 - 41942781
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    |||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  41942888 aataataaggaggaaattgataaaaatgatgattgaatatttcgaagagaatctttttatgtatgtgtccaaacattattgatttggtcttgtgaccatg 41942789  T
Q  430 gaagaata 437  Q
     |||||||    
T  41942788 aaagaata 41942781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 21356901 - 21356794
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| || |||||||||||||| ||||| | ||||||||||||||||||||||||||||||     
T  21356901 aataataatgagaaaattgataaaaaagatgattgaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccata 21356802  T
Q  430 gaagaata 437  Q
     |||||||    
T  21356801 aaagaata 21356794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 34773420 - 34773528
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 427  Q
    ||||||||| |||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||  | ||||||||||||| |||||||||||| ||    
T  34773420 aataataaa-aggaaattaataaaaaatatgattgaatattttgaggagaatctttttatgtgtgtatgtgcaaacattattgagttggtcttgtgatca 34773518  T
Q  428 tggaagaata 437  Q
    ||||||||||    
T  34773519 tggaagaata 34773528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 39744169 - 39744276
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    |||||||| ||||||| |||||||||  |||||||| ||||  ||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||     
T  39744169 aataataaggaggaaaatgataaaaaaaatgattgactattctgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccata 39744268  T
Q  430 gaagaata 437  Q
    ||||||||    
T  39744269 gaagaata 39744276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 339 - 443
Target Start/End: Original strand, 38746028 - 38746133
Alignment:
Q  339 gaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat-tcaaacattattgatttggtcttgtgaccatggaagaata 437  Q
    ||||||||||| || || ||||||||||||||| ||||||||||| |||||| |||| | || || |||||||||||||||||||||| ||||||||||     
T  38746028 gaggaaattgaaaacaaagatgattgaatattttgaggagaatctatttatgggtgtgtgtccaaaattattgatttggtcttgtgacgatggaagaatg 38746127  T
Q  438 tctcct 443  Q
    ||||||    
T  38746128 tctcct 38746133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 2345077 - 2344969
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgacca 427  Q
    ||||| || ||||||||||||||||| ||||||||||| |||  | || ||| ||||||||||||  ||| |||||||||||||||||||||||||||||    
T  2345077 aataagaaggaggaaattgataaaaaagatgattgaattttttaaagaaaat-tttttatgtgtgcttatccaaacattattgatttggtcttgtgacca 2344979  T
Q  428 tggaagaata 437  Q
     |||||||||    
T  2344978 aggaagaata 2344969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 437
Target Start/End: Complemental strand, 48504000 - 48503922
Alignment:
Q  359 tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 437  Q
    ||||||| ||||| || ||||||| |||||| ||||| | |||| ||||||||||||||||| ||| ||||||||||||    
T  48504000 tgattgagtattttgatgagaatccttttatatgtgtgtccaaatattattgatttggtcttatgaacatggaagaata 48503922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 24241667 - 24241614
Alignment:
Q  245 ttattctatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||| ||||||    
T  24241667 ttattataagagaaattctaatatggtcacaggaccaaagaaaaagtatttggt 24241614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 34773345 - 34773389
Alignment:
Q  252 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttg 296  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  34773345 atgagaaattctaatatggttacaggaccaaagaaaaagtgtttg 34773389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 437
Target Start/End: Original strand, 7101359 - 7101464
Alignment:
Q  335 taaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat----tcaaacattattgatttggtcttgtgaccatgg 430  Q
    ||||||||||||||||||||   ||||||||||||||  ||||  |||||||||||||||| |    || |||| ||||||||||||||| ||| |||||    
T  7101359 taaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgttccaacactattgatttggtcttatgatcatgg 7101457  T
Q  431 aagaata 437  Q
     ||||||    
T  7101458 gagaata 7101464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 38745959 - 38746000
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgttt 295  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  38745959 gagaaattttaatatggtcacacggccaaagaaaaagtgttt 38746000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 8971609 - 8971569
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtt 294  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  8971609 gagaaattctaatatggtcacaggaccaaaaaaaaagtgtt 8971569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 41942960 - 41942916
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||    
T  41942960 gagaaattctaatatggtcacacgaccaaagataaagtgtttggt 41942916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 16253210 - 16253166
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||| ||||||| ||||| || |||||||||||||||||||    
T  16253210 gagaaattctaatatgatcacatgatcaaagaaaaagtgtttggt 16253166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 38460622 - 38460526
Alignment:
Q  1 tgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 97  Q
    |||| |||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38460622 tgagacataaccatcttcacaatttaaacaacaagagatatttggagtttctagacttattccacaggtttaagcaaagagaagagaaagaaaactc 38460526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 330 - 441
Target Start/End: Complemental strand, 42056787 - 42056676
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    |||||||| ||| ||||||||||||| |||||||||||||||  | |||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  42056787 aataataaggagaaaattgataaaaaagatgattgaatattttaaagagaatctttttatgtttgtgtccaaacattattgatttggtcttgtgaccatg 42056688  T
Q  430 gaagaatatctc 441  Q
    ||||||||||||    
T  42056687 gaagaatatctc 42056676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 253 - 449
Target Start/End: Complemental strand, 30208380 - 30208187
Alignment:
Q  253 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggtnnnnnnnnnnnnnntaaagaagtannnnnnnaataataaagaggaaattgataa 352  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||              |||||||||        |||||||| ||||||||||||||    
T  30208380 tgagaaattctaatatggtcacaggaccaaagaaaaagtgtttggtcacacacaca----taaagaagtgtttttttaataataaggaggaaattgataa 30208285  T
Q  353 aaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgaccatggaagaatatctccttattct 449  Q
    ||| ||||||||||||||| ||||||||||||||||||| |  || | |||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  30208284 aaaagatgattgaatattt-gaggagaatctttttatgtatatgtgtccaaacattattgatttggtcttatgaccatggaagaatacctccatattct 30208187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 342 - 441
Target Start/End: Original strand, 39402038 - 39402140
Alignment:
Q  342 gaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatat 438  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  39402038 gaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatat 39402137  T
Q  439 ctc 441  Q
    |||    
T  39402138 ctc 39402140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 330 - 442
Target Start/End: Complemental strand, 5594891 - 5594779
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    |||||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||      
T  5594891 aataataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccaga 5594792  T
Q  430 gaagaatatctcc 442  Q
    |||||||||||||    
T  5594791 gaagaatatctcc 5594779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 330 - 436
Target Start/End: Original strand, 1162117 - 1162222
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    ||||||||||||||||||||||| || ||  ||||||||||| |||||||||| |||||||||||| |||||| |||| |||||||||||||||| ||||    
T  1162117 aataataaagaggaaattgataagaaagac-attgaatattttgaggagaatccttttatgtgtgtgttcaaatattactgatttggtcttgtgatcatg 1162215  T
Q  430 gaagaat 436  Q
    || ||||    
T  1162216 gacgaat 1162222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 40719895 - 40720005
Alignment:
Q  330 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacc 426  Q
    |||||||| |||||||||||||||||  ||||||||||||||| ||||||||||||||||  ||||||| | ||||||||||| ||||  |||| |||||    
T  40719895 aataataaggaggaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgtccaaacattattaatttaatcttttgacc 40719994  T
Q  427 atggaagaata 437  Q
    |||||||||||    
T  40719995 atggaagaata 40720005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 330 - 442
Target Start/End: Complemental strand, 35179268 - 35179155
Alignment:
Q  330 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 428  Q
    ||||||||  ||||||||||||||||  | | ||||||||||| ||| ||||||||||||| ||||| | |||||||||||||||||||||| |||||||    
T  35179268 aataataagaaggaaattgataaaaaaaaattattgaatattttgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttatgaccat 35179169  T
Q  429 ggaagaatatctcc 442  Q
    | ||||||| ||||    
T  35179168 gaaagaatacctcc 35179155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 440
Target Start/End: Original strand, 31333162 - 31333273
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacca 427  Q
    |||||||| ||| ||| ||||||||| |||||||||||||||  || | ||||||||||  ||||||||  |||||||| |||||||||||||||||| |    
T  31333162 aataataaggagaaaactgataaaaaagatgattgaatattttaagtaaaatctttttatgtgtgtgtaaccaaacatt-ttgatttggtcttgtgacta 31333260  T
Q  428 tggaagaatatct 440  Q
    |||||||||||||    
T  31333261 tggaagaatatct 31333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 419
Target Start/End: Complemental strand, 42921474 - 42921385
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtct 419  Q
    |||||||| || |||||||||||||| ||||||||| ||||| ||| ||||||||||||| | ||| ||||||||||||| |||||||||    
T  42921474 aataataaggatgaaattgataaaaaagatgattgattattttgagaagaatctttttatatttgtgttcaaacattattaatttggtct 42921385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 38460880 - 38460929
Alignment:
Q  148 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 197  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||    
T  38460880 tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgtttc 38460929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 38460481 - 38460427
Alignment:
Q  143 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 197  Q
    |||||||| || |||||||||||||||||||| || |||||||||||||||||||    
T  38460481 tgacctgtaataatttcattggatgtttgtaagtgccacatgttatgtacgtttc 38460427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 5594962 - 5594922
Alignment:
Q  255 agaaattttaatatggtcacaggaccaaagaaaaagtgttt 295  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  5594962 agaaattttaatatggtcacaggatcaaagaaaaagtgttt 5594922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 393
Target Start/End: Original strand, 30362018 - 30362082
Alignment:
Q  330 aataataaagaggaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgt 393  Q
    |||||||| || |||||||||||||| | || ||||||||||| ||||||||| |||||||||||    
T  30362018 aataataaggacgaaattgataaaaaataataattgaatattttgaggagaatttttttatgtgt 30362082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 437
Target Start/End: Complemental strand, 36132776 - 36132676
Alignment:
Q  337 aagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaat 436  Q
    ||||||||||| |||||||  |||||| |||||||  |  |  |||||||||||||||||| |||| | |||| |||| |||||||||| || |||||||    
T  36132776 aagaggaaattaataaaaaaaatgattaaatattttaaaaaccatctttttatgtgtgtatccaaatactattaatttagtcttgtgactatagaagaat 36132677  T
Q  437 a 437  Q
    |    
T  36132676 a 36132676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 39401955 - 39401999
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    ||||||||||||||| |||||| || |||||||||||||||||||    
T  39401955 gagaaattttaatatcgtcacatgatcaaagaaaaagtgtttggt 39401999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 40719821 - 40719865
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||| |||||||||| || ||||||||||||||||||||||    
T  40719821 gagaaattctaatatggtcgcatgaccaaagaaaaagtgtttggt 40719865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 1162043 - 1162089
Alignment:
Q  252 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||||| | ||||||||| ||||| ||||||||||||||||||    
T  1162043 atgagaaattcttatatggtcataggactaaagaaaaagtgtttggt 1162089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 34173603 - 34173559
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||||||| ||||||||| ||| ||| ||||||||||||||    
T  34173603 gagaaattttaacatggtcacaagactaaacaaaaagtgtttggt 34173559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 34514625 - 34514581
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    ||||||||||||||| |||||| ||||||| ||| ||||||||||    
T  34514625 gagaaattttaatatagtcacaagaccaaacaaatagtgtttggt 34514581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 298
Target Start/End: Complemental strand, 35179341 - 35179296
Alignment:
Q  251 tatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    ||||||||||| |||||||||||  ||| |||||||||||||||||||    
T  35179341 tatgagaaattctaatatggtca--ggatcaaagaaaaagtgtttggt 35179296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 13869435 - 13869339
Alignment:
Q  1 tgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 97  Q
    |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13869435 tgagacataaccatcttcataatttaaacaacaagagaagtttggcgtttctagaattattccaccggtttaagcaaagagaagagaaagaaaactc 13869339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 27641069 - 27640973
Alignment:
Q  1 tgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 97  Q
    |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  27641069 tgagacataaccatcttcataatttaaacaacaagagaagtttggcgtttctagaattattccaccagtttaagcaaagagaagagaaagaaaactc 27640973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 33758901 - 33758794
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    ||||||||| |||||||||||||||| |||||||||||| || ||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||    
T  33758901 aataataaaaaggaaattgataaaaaagatgattgaatagtttgaggagaatctttttatgtgtgtgtccaaacagtattgatttgatcttgtgaccatg 33758802  T
Q  430 gaagaata 437  Q
    ||||||||    
T  33758801 gaagaata 33758794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 336 - 418
Target Start/End: Original strand, 23151436 - 23151518
Alignment:
Q  336 aaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtc 418  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  23151436 aaagaagaaattgataaaaatgatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtc 23151518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 330 - 442
Target Start/End: Original strand, 2976446 - 2976556
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    |||| |||||| ||||||||||||||  ||||||||||||||  ||||  |||||||||||||||  | |||||| ||||||||||||||| ||||||||    
T  2976446 aatattaaagaagaaattgataaaaaaaatgattgaatattttaaggaccatctttttatgtgtg--tccaaacactattgatttggtcttatgaccatg 2976543  T
Q  430 gaagaatatctcc 442  Q
    |||||||| ||||    
T  2976544 gaagaatacctcc 2976556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 428
Target Start/End: Complemental strand, 34849550 - 34849451
Alignment:
Q  330 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 428  Q
    |||||||| ||| |||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| |  ||||||||||||||| ||||| |||||||    
T  34849550 aataataaggagaaaattgataaaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtcgaaacattattgatttcgtcttatgaccat 34849451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 330 - 427
Target Start/End: Complemental strand, 30319915 - 30319817
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgacca 427  Q
    ||||| || ||||||||||||||||| |||||||||||||||  | |||||| |||||||||| |  ||| |||||||||||||||||||||||||||||    
T  30319915 aataagaaggaggaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgcgcgtatccaaacattattgatttggtcttgtgacca 30319817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 20524604 - 20524711
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    ||||||||||||||||||||||||||  ||||||||||||||  |  |  ||||||| |||||||| | |||||| ||||||||| || |||||| ||||    
T  20524604 aataataaagaggaaattgataaaaaaaatgattgaatattttaaacatcatcttttgatgtgtgtgtccaaacagtattgatttagttttgtgatcatg 20524703  T
Q  430 gaagaata 437  Q
    ||||||||    
T  20524704 gaagaata 20524711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 10719854 - 10719746
Alignment:
Q  330 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 428  Q
    |||| ||||||| |||||||||||||  | |||||||||||||  ||||  || ||||||||||||| | |||||| |||| |||||||||| |||||||    
T  10719854 aatagtaaagagaaaattgataaaaaaaaatgattgaatattttaaggaccatttttttatgtgtgtgtccaaacactattaatttggtcttatgaccat 10719755  T
Q  429 ggaagaata 437  Q
    |||||||||    
T  10719754 ggaagaata 10719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 330 - 417
Target Start/End: Original strand, 37872201 - 37872291
Alignment:
Q  330 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggt 417  Q
    |||||||| |||||||||||||||||  ||||||||||||||| || |||||||||||||  ||||||| | |||| ||||||||||||||    
T  37872201 aataataaggaggaaattgataaaaaaagatgattgaatattttgatgagaatctttttatgtgtgtgtgtccaaatattattgatttggt 37872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 13869290 - 13869240
Alignment:
Q  143 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacg 193  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  13869290 tgacctgtcatgatttcattggatgtttgtaagtgccacatgttatgtacg 13869240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 27640925 - 27640875
Alignment:
Q  143 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacg 193  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  27640925 tgacctgtcatgatttcattggatgtttgtaagtgccacatgttatgtacg 27640875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 37872302 - 37872342
Alignment:
Q  400 aaacattattgatttggtcttgtgaccatggaagaatatct 440  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37872302 aaacattattgatttggtcttgtgaccatggaagaatatct 37872342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 13869825 - 13869874
Alignment:
Q  148 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 197  Q
    |||||||||||||||| |||||||||| || |||||||||||||||||||    
T  13869825 tgtcatgatttcattgaatgtttgtaagtgccacatgttatgtacgtttc 13869874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 444
Target Start/End: Complemental strand, 8026577 - 8026460
Alignment:
Q  332 taataaagaggaaattgata---aaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacc 426  Q
    ||||||||||||||||||||   ||||  ||||||||||||||  | ||  |||||||||||||| |   | |||||| ||||||||||||||||||||     
T  8026577 taataaagaggaaattgatataaaaaaaaatgattgaatattttaaagaccatctttttatgtgtatgcgtccaaacagtattgatttggtcttgtgact 8026478  T
Q  427 atggaagaatatctcctt 444  Q
    || |||||||| ||||||    
T  8026477 atagaagaatacctcctt 8026460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 429
Target Start/End: Complemental strand, 3454358 - 3454259
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    ||||||||| | |||||||||||||| |||||||||||||||  || ||||||||| ||| | |||    ||| |||||||||||| |||||| ||||||    
T  3454358 aataataaaaaagaaattgataaaaaagatgattgaatattttaagaagaatctttatatatttgtgactaaatattattgatttgatcttgtaaccatg 3454259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 36442703 - 36442660
Alignment:
Q  253 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttg 296  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  36442703 tgagaaattttaatatggtcacatgaccaaataaaaagtgtttg 36442660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 388
Target Start/End: Complemental strand, 42285277 - 42285218
Alignment:
Q  330 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatcttttta 388  Q
    |||||||| |||||||||||||||||  | ||||||||||||| ||||||||||||||||    
T  42285277 aataataaggaggaaattgataaaaaaaaatgattgaatattttgaggagaatcttttta 42285218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 27641429 - 27641478
Alignment:
Q  148 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 197  Q
    |||||||||||||||| |||||||||| || |||||| ||||||||||||    
T  27641429 tgtcatgatttcattgaatgtttgtaagtgccacatgatatgtacgtttc 27641478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 10719927 - 10719883
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||    
T  10719927 gagaaattttattatggtcacatgaccaaataaaaagtgtttggt 10719883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 298
Target Start/End: Complemental strand, 3454434 - 3454387
Alignment:
Q  251 tatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    ||||||||||||||||||||||||| || ||| |||||||| ||||||    
T  3454434 tatgagaaattttaatatggtcacatgatcaaggaaaaagtatttggt 3454387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 16778319 - 16778273
Alignment:
Q  252 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||||| |||||||| |||||||||||| |||||||| |||||    
T  16778319 atgagaaattctaatatggccacaggaccaaataaaaagtgcttggt 16778273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 21239003 - 21239045
Alignment:
Q  255 agaaattttaatatggtcacaggaccaaagaaaaagtgtttgg 297  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||    
T  21239003 agaaattctaatatggtcacaagaccaaacaaaaagtgtttgg 21239045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 20654461 - 20654502
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgttt 295  Q
    |||||||| ||||||||||||| ||||||| |||||||||||    
T  20654461 gagaaattctaatatggtcacatgaccaaataaaaagtgttt 20654502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 23145929 - 23145973
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||| ||||||||||| |||| |||||||||||| ||||||    
T  23145929 gagaaattctaatatggtcataggatcaaagaaaaagtatttggt 23145973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 37872129 - 37872173
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||| ||||||| ||| ||||||||||||||||| ||||||    
T  37872129 gagaaattctaatatgatcagaggaccaaagaaaaagtatttggt 37872173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 44880361 - 44880254
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    |||||||| ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  44880361 aataataaggaggaaattgataaaaaagatgactgaatattttgaggagaatcgttttatgtgtgtgttcaaacattattgatttggtcttgtgaccatg 44880262  T
Q  430 gaagaata 437  Q
     |||||||    
T  44880261 aaagaata 44880254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 49851273 - 49851369
Alignment:
Q  1 tgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 97  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||  |||||||||||||||| |||||||||||||    
T  49851273 tgagacataaccatcttcacaatttaaacaacaagggaagtttggcgtttctagaattattccaccagtttaagcaaagagaaaagaaagaaaactc 49851369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 330 - 441
Target Start/End: Original strand, 1994850 - 1994961
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    ||||||||||||| |||||||||||| |||||||||||||||  |||||||||||||| ||||| | | ||||||||||||||||||||||||||||||     
T  1994850 aataataaagaggtaattgataaaaaagatgattgaatattttcaggagaatctttttgtgtgtttgtccaaacattattgatttggtcttgtgaccata 1994949  T
Q  430 gaagaatatctc 441  Q
    | ||||||||||    
T  1994950 gtagaatatctc 1994961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 22220318 - 22220210
Alignment:
Q  330 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 428  Q
    |||||||| |||||||||||||||||  ||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||||||| |||| |||||||    
T  22220318 aataataaggaggaaattgataaaaaaagatgattgaatattttgagaagaatctttttatgtgtgtgtacaaacattattgatttgatcttttgaccat 22220219  T
Q  429 ggaagaata 437  Q
    |||||||||    
T  22220218 ggaagaata 22220210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 330 - 436
Target Start/End: Complemental strand, 2008508 - 2008400
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttgtgacca 427  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||  ||||||||| | |||| ||||||||||||||||||||| ||    
T  2008508 aataataaggagaaaattgataaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaatattattgatttggtcttgtgatca 2008409  T
Q  428 tggaagaat 436  Q
    |||||||||    
T  2008408 tggaagaat 2008400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 330 - 442
Target Start/End: Original strand, 22831174 - 22831286
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    |||||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||      
T  22831174 aataataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccaga 22831273  T
Q  430 gaagaatatctcc 442  Q
    |||||||||||||    
T  22831274 gaagaatatctcc 22831286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 39056875 - 39056981
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 429  Q
    |||| ||| ||| |||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| | |||||||||| |||||||||||| || ||||    
T  39056875 aatattaaggagaaaatcgataaaaa-gatgattgaatattttgaggaaaatctttttatgtgtgtgtccaaacattatagatttggtcttgcgatcatg 39056973  T
Q  430 gaagaata 437  Q
    ||||||||    
T  39056974 gaagaata 39056981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 25199123 - 25199079
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  25199123 gagaaattctaatatggtcacaggaccaaagaaaaagtgtttggt 25199079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 437
Target Start/End: Original strand, 26466362 - 26466438
Alignment:
Q  361 attgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 437  Q
    |||||||||||  |  ||||||||||||| | ||| ||||||||||||| ||||| |||||||||||||||||||||    
T  26466362 attgaatattttaaaaagaatctttttatatatgtgttcaaacattattaatttgatcttgtgaccatggaagaata 26466438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 22220389 - 22220346
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttgg 297  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  22220389 gagaaattttaatatggtcacaggaccaaagaaaaagtatttgg 22220346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 49851417 - 49851471
Alignment:
Q  143 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 197  Q
    |||||||| ||||||||||||||||||||||| || ||||||||||||| |||||    
T  49851417 tgacctgttatgatttcattggatgtttgtaagtgccacatgttatgtatgtttc 49851471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 49850884 - 49850835
Alignment:
Q  148 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 197  Q
    |||||||||||||||| |||||||||| || |||||||||||||||||||    
T  49850884 tgtcatgatttcattgaatgtttgtaagtgccacatgttatgtacgtttc 49850835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 2008581 - 2008537
Alignment:
Q  253 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttgg 297  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  2008581 tgagaaattctaatatggtcacaggaccaaagaaatagtgtttgg 2008537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 22831103 - 22831143
Alignment:
Q  255 agaaattttaatatggtcacaggaccaaagaaaaagtgttt 295  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  22831103 agaaattttaatatggtcacaggatcaaagaaaaagtgttt 22831143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 28297782 - 28297695
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggt 417  Q
    |||||||||||||||||||||||||   ||||| |||||| |  |||||||||||||||| | | | | ||||| |||||||||||||    
T  28297782 aataataaagaggaaattgataaaagaaatgatcgaatatgttaaggagaatctttttatatatatgtccaaactttattgatttggt 28297695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 45805449 - 45805499
Alignment:
Q  248 ttctatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||||||||||||    
T  45805449 ttctctgagaaattctaatatggtcacatgaccaaataaaaagtgtttggt 45805499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 437
Target Start/End: Original strand, 45805583 - 45805640
Alignment:
Q  380 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 437  Q
    |||||||||||||||| | |||||| |||||||||| |||||| | ||||||||||||    
T  45805583 atctttttatgtgtgtgtgcaaacactattgatttgatcttgtaatcatggaagaata 45805640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 1994780 - 1994825
Alignment:
Q  253 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    ||||||||| ||||||||||||| ||||||||||| ||| ||||||    
T  1994780 tgagaaattctaatatggtcacatgaccaaagaaatagtatttggt 1994825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 330 - 441
Target Start/End: Complemental strand, 8541539 - 8541427
Alignment:
Q  330 aataataaagaggaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 428  Q
    |||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  8541539 aataataaggaggaaattgataaaaaataatgattgaatattttgaggagaatctttttacgtgtgtgttcaaacattattgatttggtcttgtgaccat 8541440  T
Q  429 ggaagaatatctc 441  Q
      |||||||||||    
T  8541439 aaaagaatatctc 8541427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 34998637 - 34998528
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttgtgacca 427  Q
    |||||||| ||| |||||||||||||| |||||||||||||| ||||||||||||||  ||||||||| | |||||||||||||||||||||||||||||    
T  34998637 aataataaggagaaaattgataaaaataatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaacattattgatttggtcttgtgacca 34998538  T
Q  428 tggaagaata 437  Q
    ||||||||||    
T  34998537 tggaagaata 34998528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 29735565 - 29735661
Alignment:
Q  1 tgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 97  Q
    |||| |||||||||||||||||||||||||||||||| | |||||  ||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  29735565 tgagacataaccatcttcacaatttaaacaacaagaggaatttggcatttttagaattattccaccggtttaagcaaagagaagagaaagaaaactc 29735661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 10545100 - 10544991
Alignment:
Q  330 aataataaagaggaaattgataaa--aatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgacca 427  Q
    ||||||||||||||||||||||||  ||  ||||||||||||||  |  | ||||||||||||||||| | |||| | |||||||| |||||||||| |     
T  10545100 aataataaagaggaaattgataaataaaaaatgattgaatattttaaaaataatctttttatgtgtgtctccaaatactattgattcggtcttgtgatcg 10545001  T
Q  428 tggaagaata 437  Q
    ||||||||||    
T  10545000 tggaagaata 10544991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 437
Target Start/End: Original strand, 39187986 - 39188065
Alignment:
Q  358 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 437  Q
    ||||||||||||||  ||||  ||||||||||| |||| | |||| | ||||||||||||||| ||||||||||||||||    
T  39187986 atgattgaatattttaaggaccatctttttatgcgtgtgtccaaatactattgatttggtcttctgaccatggaagaata 39188065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 45627414 - 45627524
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttt-atgtgtgtat-tcaaa-cattattgatttggtcttgtgacc 426  Q
    ||||||| | ||||||||||||||||  |||||| |||||||  |||| ||| ||||| |||||||| | ||||| || ||||||||||||| |||||||    
T  45627414 aataatataaaggaaattgataaaaaaaatgattaaatattttaaggacaattttttttatgtgtgtgtgtcaaaacactattgatttggtcctgtgacc 45627513  T
Q  427 atggaagaata 437  Q
    |||||||||||    
T  45627514 atggaagaata 45627524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 32676852 - 32676800
Alignment:
Q  380 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaa 432  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||||||||||    
T  32676852 atctttttacatgtgtatccaaacactattgatttggtcttgtgaccatggaa 32676800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 15878797 - 15878853
Alignment:
Q  391 tgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctccttatt 447  Q
    ||||||| |||||  |||||||||||||||||||| || |||||||||||| |||||    
T  15878797 tgtgtatccaaacgctattgatttggtcttgtgacaatagaagaatatctctttatt 15878853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 8541611 - 8541565
Alignment:
Q  252 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||||||||||||||| | |||| |||||||| ||||||||||    
T  8541611 atgagaaattttaatatggttataggatcaaagaaatagtgtttggt 8541565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 29735710 - 29735759
Alignment:
Q  143 tgacctgtcatgatttcattgg--atgtttgtaattgtcacatgttatgt 190  Q
    ||||||||||||||||||||||  |||||||||| || ||||||||||||    
T  29735710 tgacctgtcatgatttcattggatatgtttgtaagtgccacatgttatgt 29735759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 29735166 - 29735117
Alignment:
Q  148 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 197  Q
    |||||| |||| ||||||||||||||| || ||||||||||||| |||||    
T  29735166 tgtcataattttattggatgtttgtaagtgccacatgttatgtaagtttc 29735117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 30783412 - 30783456
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||| ||| ||||||||| ||||||| ||||||||||||||    
T  30783412 gagaaattctaaaatggtcacatgaccaaataaaaagtgtttggt 30783456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 34998709 - 34998665
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||| ||||||||||||| || |||||||||||| ||||||    
T  34998709 gagaaattctaatatggtcacatgatcaaagaaaaagtatttggt 34998665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 40076693 - 40076753
Alignment:
Q  330 aataataaagaggaaattgat-aaaaatgatgattgaatatttagaggagaatctttttat 389  Q
    |||||||| |||||||||||| ||||| |||||||||||||||  |  |||||||||||||    
T  40076693 aataataaggaggaaattgataaaaaaagatgattgaatatttttaaaagaatctttttat 40076753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 3870135 - 3870024
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta----tgtgtgtattcaaacattattgatttggtcttgtgac 425  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||    ||||||| |  ||||||||||||||||||||||||||    
T  3870135 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtctgtgtgtgtcaaaacattattgatttggtcttgtgac 3870036  T
Q  426 catggaagaata 437  Q
    ||||||||||||    
T  3870035 catggaagaata 3870024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 11028887 - 11028779
Alignment:
Q  330 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 428  Q
    |||||||| |||||||||||||||||  |||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||||| |||| ||    
T  11028887 aataataaggaggaaattgataaaaaaagatgattgaatattttaaggagaatctttttatgtgtgtgtccaaacattattgatttggtcttttgacgat 11028788  T
Q  429 ggaagaata 437  Q
    |||||||||    
T  11028787 ggaagaata 11028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 344 - 437
Target Start/End: Complemental strand, 36400952 - 36400857
Alignment:
Q  344 aattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgaccatggaagaata 437  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||    
T  36400952 aattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgttcaaacattattgatttggtcttgagaccatggaagaata 36400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 330 - 443
Target Start/End: Original strand, 28734070 - 28734183
Alignment:
Q  330 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 428  Q
    ||||||||||| ||||||||||||||  ||||| ||| ||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |    
T  28734070 aataataaagaagaaattgataaaaaaagatgagtgagtattttgaggagaat-tttttatgtgtgtgtccaaacattattgatttggtcttgtgaccgt 28734168  T
Q  429 ggaagaatatctcct 443  Q
    ||||||||| |||||    
T  28734169 ggaagaatacctcct 28734183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 37721557 - 37721449
Alignment:
Q  330 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 428  Q
    |||||||| |||||||||||||||||  | ||||||||||||| || ||||||||||||||| | || | |||| |||||||||||||||||||||||||    
T  37721557 aataataaggaggaaattgataaaaaaaaatgattgaatattttgaagagaatctttttatgcgcgtgtccaaatattattgatttggtcttgtgaccat 37721458  T
Q  429 ggaagaata 437  Q
    |||||||||    
T  37721457 ggaagaata 37721449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 38879625 - 38879517
Alignment:
Q  330 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 428  Q
    |||||| | ||| |||||||||||||  ||||||| ||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||    
T  38879625 aataatgaggagaaaattgataaaaaaagatgatttaatattttgaggagaatctttttatgtgtgtgtccaaacattattaatttggtcttgtgactat 38879526  T
Q  429 ggaagaata 437  Q
    |||||||||    
T  38879525 ggaagaata 38879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 3647526 - 3647418
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgacca 427  Q
    ||||| || ||| ||||||||||||| |||||||||||||||  | |||||| |||||||||||  || |||||||||||||||||||||||||||||||    
T  3647526 aataagaaggagaaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgttcgtgttcaaacattattgatttggtcttgtgacca 3647428  T
Q  428 tggaagaata 437  Q
     |||||||||    
T  3647427 aggaagaata 3647418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 3870208 - 3870164
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  3870208 gagaaattctaatatggtcacaggaccaaagaaaaagtgtttggt 3870164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 330 - 436
Target Start/End: Original strand, 30706149 - 30706258
Alignment:
Q  330 aataataaagaggaaattgataaaaatga-----tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtga 424  Q
    |||| |||||||||||||||||||||  |     |||||||||||||  ||||  ||||||||||||||||   |||||| |||||||||||||||||||    
T  30706149 aatagtaaagaggaaattgataaaaaaaaaaaaatgattgaatattttaaggaccatctttttatgtgtgtc--caaacactattgatttggtcttgtga 30706246  T
Q  425 ccatggaagaat 436  Q
    ||||| ||||||    
T  30706247 ccatgtaagaat 30706258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 34480055 - 34480099
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  34480055 gagaaattctaatatggtcacaggaccaaagaaaaagtgtttggt 34480099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 6512079 - 6512191
Alignment:
Q  330 aataataaagaggaaattgataaaaatga---tgattgaatattt-agaggagaatctttttatgtgtgtatt--caaacattattgatttggtcttgtg 423  Q
    ||||||||||||||||||||||||||  |   ||||||||||||| ||||   | ||||||||||||||| |   |||||| ||||||||||||||||||    
T  6512079 aataataaagaggaaattgataaaaaaaaaaatgattgaatattttagagttca-tctttttatgtgtgtgtgtccaaacactattgatttggtcttgtg 6512177  T
Q  424 accatggaagaata 437  Q
    ||||||||| ||||    
T  6512178 accatggaataata 6512191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 36401036 - 36400993
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttgg 297  Q
    |||||||| ||||||||||||||||| |||||||||||||||||    
T  36401036 gagaaattctaatatggtcacaggactaaagaaaaagtgtttgg 36400993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 3949317 - 3949378
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt 391  Q
    ||||||||| | ||||||||||||||  |||||||||||||| ||||||||  |||||||||    
T  3949317 aataataaaaaagaaattgataaaaaaaatgattgaatattttgaggagaaattttttatgt 3949378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 30706078 - 30706122
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||||||||||||||||| || |||| ||||||||||||||    
T  30706078 gagaaattttaatatggtcacatgatcaaataaaaagtgtttggt 30706122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 37721630 - 37721585
Alignment:
Q  253 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    ||||||||| ||||||||||||  ||| ||||||||||||||||||    
T  37721630 tgagaaattctaatatggtcacgagactaaagaaaaagtgtttggt 37721585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 9009163 - 9009119
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    |||||||| ||||||||||||| ||||||| ||| ||||||||||    
T  9009163 gagaaattctaatatggtcacaagaccaaacaaatagtgtttggt 9009119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 342 - 441
Target Start/End: Complemental strand, 35464 - 35362
Alignment:
Q  342 gaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatat 438  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  35464 gaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatat 35365  T
Q  439 ctc 441  Q
    |||    
T  35364 ctc 35362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 35547 - 35503
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 298  Q
    ||||||||||||||| |||||| || |||||||||||||||||||    
T  35547 gagaaattttaatatcgtcacatgatcaaagaaaaagtgtttggt 35503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 2141240 - 2141348
Alignment:
Q  330 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 428  Q
    |||||||| |||||||||||||||||| ||||||||||||||| ||| | |||||||||||||| || | ||||| |||||||| || ||||||||||||    
T  2141240 aataataatgaggaaattgataaaaatagatgattgaatattttgagaaaaatctttttatgtgggtgtccaaacgttattgatatgatcttgtgaccat 2141339  T
Q  429 ggaagaata 437  Q
    |||||||||    
T  2141340 ggaagaata 2141348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 330 - 442
Target Start/End: Complemental strand, 7080262 - 7080148
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgacca 427  Q
    |||| |||||| |||||||||||||| ||| ||||||||||| || ||||||||||||||||  |||| | |||||||||||||||||||| ||||||||    
T  7080262 aatattaaagacgaaattgataaaaaagattattgaatattttgaagagaatctttttatgtgtgtgtgtccaaacattattgatttggtcatgtgacca 7080163  T
Q  428 tggaagaatatctcc 442  Q
    | |||||||| ||||    
T  7080162 tagaagaatacctcc 7080148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 437
Target Start/End: Original strand, 25336928 - 25337023
Alignment:
Q  343 aaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgaccatggaagaata 437  Q
    ||||||||||||| |||||||||||||||  | |||||| ||||||||||||  | | ||||||||||||||||| ||||||||||| |||||||||    
T  25336928 aaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgtgcgtgtccaaacattattgatttgatcttgtgaccaaggaagaata 25337023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 17852650 - 17852690
Alignment:
Q  256 gaaattttaatatggtcacaggaccaaagaaaaagtgtttg 296  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  17852650 gaaattttaatatggtcacagaacgaaagaaaaagtgtttg 17852690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 358 - 437
Target Start/End: Original strand, 18084 - 18163
Alignment:
Q  358 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 437  Q
    |||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  18084 atgattgaatattttgaggagaatctttttctatgtgtgttcaaacattattgattggatcttgtaaccatggaagaata 18163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 17977 - 18022
Alignment:
Q  254 gagaaattttaatatggtcacaggaccaaag-aaaaagtgtttggt 298  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||||    
T  17977 gagaaattctaatatggtcacgggaccaaagaaaaaagtgtttggt 18022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 358 - 445
Target Start/End: Complemental strand, 25767 - 25680
Alignment:
Q  358 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcctta 445  Q
    |||||||||||||| || || |||||||||| |||||| | ||||||||||||||||||||| |||| |||||||||||| |||||||    
T  25767 atgattgaatattttgatgaaaatctttttacgtgtgtgtccaaacattattgatttggtctcgtgatcatggaagaatacctcctta 25680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 57 - 165
Alignment:
Q  330 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgacca 427  Q
    ||||||||||| ||||||||||||||  ||||||||||||||  | ||  ||||||||||||  |||| | |||||| ||||||||||||||||||| ||    
T  57 aataataaagatgaaattgataaaaaa-atgattgaatatttttaagactatctttttatgtatgtgtgtccaaacactattgatttggtcttgtgatca 155  T
Q  428 tggaagaata 437  Q
    ||||||||||    
T  156 tggaagaata 165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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