View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19320_low_9 (Length: 440)
Name: NF19320_low_9
Description: NF19320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19320_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 153 - 422
Target Start/End: Original strand, 2621890 - 2622152
Alignment:
| Q |
153 |
gaataaagctaggtagccgagtttacttttcatgtatcatgtttcatttgaaagcttataagtgaaagttttgagtcctaaaagagcttttgttgatatt |
252 |
Q |
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| T |
2621890 |
gaataaagctaggtagccgagtttacttttcatgtatcat-------ttgaaagcttataagtgaaagttttgagtcctaaaagagcttttgttgatatt |
2621982 |
T |
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| Q |
253 |
ctttttgtccagcaggataaaagaaattcaaagaatttttccaacattttttaccactacttggagtaatgttatggtttcttcatttgtattcaataac |
352 |
Q |
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| T |
2621983 |
ctttttgtccagcaggataaaagaaattcaaagaatttttccaacattttttaccactacttggagtaatgttatggtttcttcatttgtattcaataac |
2622082 |
T |
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| Q |
353 |
ttcccaattacacttttcaatacagctagacattagacaacataatactactatgcttttaagctcgaag |
422 |
Q |
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| T |
2622083 |
ttcacaattatacttttcaatacagctagacattagacaacataatactactatgcttttaagctcgaag |
2622152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 2621738 - 2621854
Alignment:
| Q |
1 |
atttagatgacgatacttcatagtgatgtaatatatttattgttgaatcagaatttgattttcgatttggttgttactgcaaagcaaacttatgtattga |
100 |
Q |
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| T |
2621738 |
atttagatgacgatacttcatagtgatgtaatatatttattattgaatcagaatttgattttcgatttggttgctactgcaaagcaaacttatgtattga |
2621837 |
T |
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| Q |
101 |
gttatccaactttgagc |
117 |
Q |
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| T |
2621838 |
gttatccaactttgagc |
2621854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 2476801 - 2476696
Alignment:
| Q |
194 |
tttcatttgaaagcttataagtgaaagtttt--gagtcctaaaagagcttttgttgatattctttttgtccagcaggataaaagaaattcaaagaatttt |
291 |
Q |
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| T |
2476801 |
tttcatttgaaagcttataaatcaaagttgtatgactcctgaaagaacttctgttgacattcttttt-tccagcagcaaaaaagaaattcaaacaatttt |
2476703 |
T |
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| Q |
292 |
tccaaca |
298 |
Q |
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|| |||| |
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| T |
2476702 |
tctaaca |
2476696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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