View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19321_high_3 (Length: 292)
Name: NF19321_high_3
Description: NF19321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19321_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 47540856 - 47540596
Alignment:
| Q |
16 |
atgtctcatagtcaatatgagatttaatctcattgcggaaccaaatggcctaagtcgtggaaatactaaggagtctaccaggggataaagattctaatta |
115 |
Q |
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| T |
47540856 |
atgtctcatagtcaatatgagatttaatctcattgcggaaccaaatggcctaagtcgtggaaatactaaggtgtctaccaggggataaagattctaattg |
47540757 |
T |
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| Q |
116 |
cagtgggttaaaataaaacgtcggccggatgatcatctcagaaccaataagatttgcacggggattttgtaaactggaaattgtgagttgttgaagatca |
215 |
Q |
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| T |
47540756 |
cagtgggttaaaataaaacgtcggccggatgatcatcttagaaccaataagatttgcacggggattttgtaaactggaaattgtgagttgttgaagatca |
47540657 |
T |
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| Q |
216 |
gttaaagttnnnnnnnntaggaaacctacatgtaaaattgtcaaccatagctctgtgaaaac |
277 |
Q |
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| T |
47540656 |
gttaaagtt-aaaaaaataggaaacctacatgtaaaattgtcaaccatagctctgtgaaaac |
47540596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 47539395 - 47539183
Alignment:
| Q |
16 |
atgtctcatagtcaatatgagatttaatctcattgcggaaccaaatggcctaagtcgtggaaata--ctaaggagtctaccaggggataaagattctaat |
113 |
Q |
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| T |
47539395 |
atgtctcgttgtcaatatgagatttagtctcacagcggatccaaatgaactaagtcgtggagataatctaaggtgcctattaggggc-aaagactttaat |
47539297 |
T |
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| Q |
114 |
tacagtgggttaaaataa------aacgtcggccggatgatcatctcagaaccaataagatttgcacggggattttgtaaactggaaattgtga--gttg |
205 |
Q |
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| T |
47539296 |
tacggtgggttagaagaagaaaaaaacgtcatcagtatgatcatctcatacccaattggatt-gcacggggattttgtaaactggaaattgtgagcgtgg |
47539198 |
T |
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| Q |
206 |
ttgaagatcagttaa |
220 |
Q |
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| T |
47539197 |
ttgaagatcagttaa |
47539183 |
T |
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