View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19322_high_3 (Length: 373)
Name: NF19322_high_3
Description: NF19322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19322_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 105 - 356
Target Start/End: Original strand, 9982227 - 9982478
Alignment:
| Q |
105 |
cctgtgctcccttctcagctatttctctaggtggaacctcgagaggattttcttccactcgcaagacgcgtaagtttgtgagcatcctaaacgagtcagg |
204 |
Q |
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| T |
9982227 |
cctgtgctcccttctcagctatttctctaggtggaacctcaagaggattttcttccactcgcaagacgcgtaagtttgtgagcatcctaaacgagtcagg |
9982326 |
T |
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| Q |
205 |
gagaacacgtatctgattattgctgatatccatttcctcaagcaattcgaggttcccaattgatctaggtaagtgtctcatgtcagcaaaattgtttcca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9982327 |
gagaacacgtatctgattattgctgatatccatttcctcaagcaattcgaggttcccaattgatctaggtaagtgtctcatgtcagcaaaattgtttcca |
9982426 |
T |
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| Q |
305 |
atgttcattttgacaagagaggtagcgaaacacaagctctcgggaatggact |
356 |
Q |
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| T |
9982427 |
atgttcattttgacaagagaggtagcgaaacacaagctctcgggaatggact |
9982478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 305
Target Start/End: Complemental strand, 30844682 - 30844482
Alignment:
| Q |
105 |
cctgtgctcccttctcagctatttctctaggtggaacctcgagaggattttcttccactcgcaagacgcgtaagttt-gtgagcatcctaaacgagtcag |
203 |
Q |
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||||||||||||| ||| ||| | ||| || ||||| || ||||||||||||||||||| ||| || | |||| | |||||||| ||||| || | | |
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| T |
30844682 |
cctgtgctcccttttcaactacatgtcttggaggaacttcaagaggattttcttccactctcaatacttg-aagtctagtgagcattctaaaagaatagg |
30844584 |
T |
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| Q |
204 |
ggagaacacgtatctgattattgctgatatccatttcctcaagcaattcgaggttcccaattgatctaggtaagtgtctcatgtcagcaaaattgtttcc |
303 |
Q |
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| T |
30844583 |
gaagagcatgtatttgattattactaatatccaattcctcaagcatttcaaggttcccaatagaccttggcaatgatctcatatcagcaaaattgttccc |
30844484 |
T |
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| Q |
304 |
aa |
305 |
Q |
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|| |
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| T |
30844483 |
aa |
30844482 |
T |
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