View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19322_high_4 (Length: 331)
Name: NF19322_high_4
Description: NF19322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19322_high_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 184 - 331
Target Start/End: Complemental strand, 44092807 - 44092660
Alignment:
| Q |
184 |
caacgcgctgaattaaagagcaaaaagtttctcgatatcccattaccatcacctatgtttccaaattccaatccatcatttgaatactttatttccacac |
283 |
Q |
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| T |
44092807 |
caacgcgctgaattaaagagcaaaaagtttctcgatatcccattaccatcacctatgtttccaaattccaatccatcatttgaatactttatttccacac |
44092708 |
T |
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| Q |
284 |
ctcccatggtgccttcataacattgttgatgaacatcattaatccacc |
331 |
Q |
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| T |
44092707 |
ctcccatggtgccttcgtaacattgttgatgaacatcattaatccacc |
44092660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 44092989 - 44092846
Alignment:
| Q |
1 |
tctcctccaaacatttgataatcannnnnnn-gtcaacttaactaaactggcagagacaatgcataatatataccgagatcgtggttcgaaccccag--a |
97 |
Q |
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| T |
44092989 |
tctcctccaaacatttgataatcattttttttgtcagcttaactaaactggtagagataatgcataatatataccgagatcgtggttcgaaccccagaca |
44092890 |
T |
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| Q |
98 |
caccacacttctgcacatttttaaaatgttgataaagaaaaaaa |
141 |
Q |
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| T |
44092889 |
caccacacttctgtacattttttaaatgttgataaagaaaaaaa |
44092846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 20407304 - 20407356
Alignment:
| Q |
58 |
aatgcataatatataccgagatcgtggttcgaaccccagacaccacacttctg |
110 |
Q |
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| T |
20407304 |
aatgcatattatatgcagagatcggggttcgaaccccagacaccccacttctg |
20407356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 3596269 - 3596338
Alignment:
| Q |
48 |
tggcagagacaatgcataatatataccgagatcgtggttcgaaccccagacaccacacttctgcacattt |
117 |
Q |
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| T |
3596269 |
tggcagagacattgcataatttatgcaggggtcggggttcgaaccccggacaccccacttctccacattt |
3596338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 15939297 - 15939377
Alignment:
| Q |
37 |
cttaactaaactggcagagacaatgcataatatataccgagatcgtggttcgaaccccagacaccacacttctgcacattt |
117 |
Q |
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| T |
15939297 |
cttaactcaattggcagagacattgcataatatatgcagaggttagggttcgaaccccgaacaccccacttctccacattt |
15939377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 44794900 - 44794932
Alignment:
| Q |
39 |
taactaaactggcagagacaatgcataatatat |
71 |
Q |
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| T |
44794900 |
taactcaactggcagagacaatgcataatatat |
44794932 |
T |
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