View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19322_low_1 (Length: 584)
Name: NF19322_low_1
Description: NF19322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19322_low_1 |
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| [»] scaffold0633 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 25026007 - 25026292
Alignment:
| Q |
18 |
agaacgagaaccacatgataacttaattattagtcaacatgaaattttataagatgacaatatatatcaaatacaatcgtcaagctatgttgctttctct |
117 |
Q |
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| T |
25026007 |
agaacgagaactacatgataacttaattattagtcaacatgaaattttataagatgacaatatatatcaaatataatcgtcaagctatgttgctttctct |
25026106 |
T |
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| Q |
118 |
tttccgttggatatatacctgcttatctcaaataaacattaacctaacacgatgagattacatatcaataagttccttaactaaaacccaaacaatctat |
217 |
Q |
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| T |
25026107 |
tttcctttggatatatacctgcttatctcaaataaacattaacctaacacgatgagattacatatcaataagttccttaactaaaacccaaacaatctat |
25026206 |
T |
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| Q |
218 |
tattgacaattagtttttattacttttactaatatgtggttattagaaatgcaataagaatattatctcaaagcatgctttgagata |
304 |
Q |
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| T |
25026207 |
tattgacaattag-ttttattacttttactaatatgtggttaatagaaatgcaataagaatattatctcaaagcatgctttgagata |
25026292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 281 - 567
Target Start/End: Complemental strand, 25026292 - 25026007
Alignment:
| Q |
281 |
tatctcaaagcatgctttgagataatattcttattgcatttctaataaccacatattagtaaaagtaataaaaactaattgtcaataatagattgtttgg |
380 |
Q |
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| T |
25026292 |
tatctcaaagcatgctttgagataatattcttattgcatttctattaaccacatattagtaaaagtaataaaa-ctaattgtcaataatagattgtttgg |
25026194 |
T |
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| Q |
381 |
gttttagttaaggaacttattgatatgtaatctcatcgtgttaggttaatgtttatttgagataagcaggtatatatccaacggaaaagagaaagcaaca |
480 |
Q |
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| T |
25026193 |
gttttagttaaggaacttattgatatgtaatctcatcgtgttaggttaatgtttatttgagataagcaggtatatatccaaaggaaaagagaaagcaaca |
25026094 |
T |
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| Q |
481 |
tagcttgacgattgtatttgatatatattgtcatcttataaaatttcatgttgactaataattaagttatcatgtggttctcgttct |
567 |
Q |
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| T |
25026093 |
tagcttgacgattatatttgatatatattgtcatcttataaaatttcatgttgactaataattaagttatcatgtagttctcgttct |
25026007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0633 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0633
Description:
Target: scaffold0633; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 3176 - 3269
Alignment:
| Q |
137 |
tgcttatctcaaataaacattaacctaacacgatgagattacatatcaataagttccttaactaaaacccaaacaatctattattgacaattag |
230 |
Q |
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| T |
3176 |
tgcttaacttaaataaacattaaactaacagggtgagatcatgtctcagtgagttcattaactaaaacctaaacagtctattcttgactattag |
3269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0633; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 448
Target Start/End: Complemental strand, 3269 - 3176
Alignment:
| Q |
355 |
ctaattgtcaataatagattgtttgggttttagttaaggaacttattgatatgtaatctcatcgtgttaggttaatgtttatttgagataagca |
448 |
Q |
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| T |
3269 |
ctaatagtcaagaatagactgtttaggttttagttaatgaactcactgagacatgatctcaccctgttagtttaatgtttatttaagttaagca |
3176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 448
Target Start/End: Original strand, 41651727 - 41651820
Alignment:
| Q |
355 |
ctaattgtcaataatagattgtttgggttttagttaaggaacttattgatatgtaatctcatcgtgttaggttaatgtttatttgagataagca |
448 |
Q |
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| T |
41651727 |
ctaatagtcaagaatagactgtttaggttttagttaatgaactcactgagacatgatctcaccctgttagtttaatgtttatttaagttaagca |
41651820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 41651820 - 41651727
Alignment:
| Q |
137 |
tgcttatctcaaataaacattaacctaacacgatgagattacatatcaataagttccttaactaaaacccaaacaatctattattgacaattag |
230 |
Q |
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| T |
41651820 |
tgcttaacttaaataaacattaaactaacagggtgagatcatgtctcagtgagttcattaactaaaacctaaacagtctattcttgactattag |
41651727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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