View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19322_low_10 (Length: 251)

Name: NF19322_low_10
Description: NF19322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19322_low_10
NF19322_low_10
[»] chr3 (25 HSPs)
chr3 (102-248)||(34897794-34897940)
chr3 (1-124)||(1995450-1995573)
chr3 (39-113)||(52859272-52859346)
chr3 (1-109)||(10474400-10474507)
chr3 (1-107)||(19830394-19830500)
chr3 (1-107)||(27033657-27033763)
chr3 (1-107)||(43719910-43720016)
chr3 (11-107)||(24754673-24754769)
chr3 (11-107)||(24763670-24763766)
chr3 (14-106)||(44637961-44638052)
chr3 (1-68)||(2229989-2230056)
chr3 (1-107)||(29586342-29586447)
chr3 (22-72)||(33632849-33632899)
chr3 (19-107)||(51982549-51982636)
chr3 (1-73)||(54911660-54911732)
chr3 (1-68)||(34373837-34373904)
chr3 (12-114)||(48084836-48084939)
chr3 (40-109)||(30235416-30235484)
chr3 (1-62)||(34373593-34373654)
chr3 (14-102)||(47750274-47750361)
chr3 (1-72)||(31523666-31523737)
chr3 (22-64)||(25285843-25285885)
chr3 (18-68)||(46167416-46167466)
chr3 (11-72)||(550814-550875)
chr3 (14-107)||(40851793-40851886)
[»] chr6 (18 HSPs)
chr6 (1-115)||(7215807-7215921)
chr6 (11-115)||(2800566-2800670)
chr6 (1-116)||(4804454-4804569)
chr6 (12-107)||(17828532-17828626)
chr6 (1-107)||(7162090-7162196)
chr6 (1-107)||(21159332-21159438)
chr6 (11-105)||(23936269-23936365)
chr6 (1-65)||(27826544-27826608)
chr6 (1-107)||(17944168-17944274)
chr6 (12-107)||(227526-227622)
chr6 (1-68)||(12412643-12412710)
chr6 (1-68)||(13089751-13089818)
chr6 (1-72)||(24484885-24484956)
chr6 (72-114)||(9952993-9953035)
chr6 (26-64)||(9954332-9954370)
chr6 (12-72)||(13888520-13888581)
chr6 (1-68)||(1249150-1249215)
chr6 (50-106)||(29229149-29229204)
[»] chr1 (22 HSPs)
chr1 (1-115)||(39426216-39426330)
chr1 (1-116)||(32887735-32887849)
chr1 (1-107)||(26372258-26372362)
chr1 (27-113)||(35534741-35534825)
chr1 (1-111)||(26860010-26860119)
chr1 (1-107)||(50294026-50294132)
chr1 (11-68)||(7840681-7840738)
chr1 (1-72)||(5047379-5047450)
chr1 (1-68)||(12151773-12151840)
chr1 (1-107)||(32618807-32618911)
chr1 (11-107)||(50484402-50484498)
chr1 (12-114)||(18976260-18976363)
chr1 (11-73)||(24977256-24977318)
chr1 (1-72)||(30077642-30077713)
chr1 (14-68)||(48327156-48327210)
chr1 (52-106)||(49384627-49384680)
chr1 (50-114)||(1228496-1228560)
chr1 (40-116)||(12380831-12380907)
chr1 (40-116)||(12384898-12384974)
chr1 (1-61)||(24413291-24413351)
chr1 (15-115)||(27982072-27982171)
chr1 (31-107)||(45978041-45978117)
[»] chr2 (25 HSPs)
chr2 (1-113)||(30709116-30709228)
chr2 (1-114)||(4446852-4446965)
chr2 (1-116)||(19908786-19908899)
chr2 (39-114)||(30217517-30217592)
chr2 (1-115)||(31618724-31618836)
chr2 (45-115)||(30721564-30721632)
chr2 (1-107)||(13238687-13238793)
chr2 (16-90)||(15709789-15709862)
chr2 (1-107)||(35316831-35316937)
chr2 (22-90)||(36929743-36929810)
chr2 (1-64)||(28564898-28564961)
chr2 (40-114)||(2063399-2063472)
chr2 (1-111)||(30857638-30857747)
chr2 (11-72)||(35315286-35315347)
chr2 (11-72)||(38397097-38397158)
chr2 (1-73)||(34512022-34512094)
chr2 (1-72)||(8988861-8988932)
chr2 (1-71)||(21454494-21454563)
chr2 (41-107)||(22061433-22061498)
chr2 (14-114)||(35315521-35315620)
chr2 (1-72)||(374999-375070)
chr2 (1-68)||(23259489-23259556)
chr2 (64-113)||(6946335-6946384)
chr2 (1-90)||(15722240-15722328)
chr2 (11-72)||(19905897-19905958)
[»] chr8 (16 HSPs)
chr8 (16-113)||(42761734-42761831)
chr8 (18-116)||(21360299-21360400)
chr8 (1-68)||(30426671-30426738)
chr8 (16-90)||(18689512-18689585)
chr8 (12-90)||(24557162-24557239)
chr8 (1-107)||(28069725-28069831)
chr8 (1-107)||(36991362-36991468)
chr8 (1-72)||(26749546-26749617)
chr8 (16-72)||(17520403-17520459)
chr8 (13-109)||(42338008-42338103)
chr8 (1-107)||(6014200-6014307)
chr8 (1-70)||(36748492-36748560)
chr8 (26-117)||(37966397-37966487)
chr8 (1-63)||(10672519-10672581)
chr8 (52-118)||(20169125-20169190)
chr8 (19-68)||(40695249-40695298)
[»] chr5 (25 HSPs)
chr5 (1-107)||(29341001-29341106)
chr5 (1-107)||(35660572-35660678)
chr5 (1-106)||(4895699-4895804)
chr5 (11-107)||(11775809-11775905)
chr5 (1-107)||(18625384-18625490)
chr5 (1-107)||(32129580-32129686)
chr5 (1-107)||(37266737-37266843)
chr5 (1-107)||(43309114-43309220)
chr5 (1-68)||(14349809-14349876)
chr5 (1-72)||(31653041-31653112)
chr5 (11-90)||(34827208-34827287)
chr5 (1-68)||(40753164-40753231)
chr5 (43-109)||(9460597-9460662)
chr5 (1-107)||(13032124-13032230)
chr5 (15-72)||(10362012-10362069)
chr5 (19-72)||(18653385-18653438)
chr5 (1-105)||(39902421-39902525)
chr5 (1-72)||(36290608-36290679)
chr5 (1-71)||(2984389-2984459)
chr5 (18-64)||(14688597-14688643)
chr5 (80-114)||(21213953-21213987)
chr5 (2-72)||(27428879-27428949)
chr5 (19-72)||(3057152-3057205)
chr5 (14-71)||(31279933-31279990)
chr5 (12-72)||(31546503-31546563)
[»] chr7 (27 HSPs)
chr7 (25-114)||(47270580-47270668)
chr7 (1-112)||(40023215-40023325)
chr7 (1-107)||(4888473-4888579)
chr7 (20-76)||(29844316-29844372)
chr7 (1-68)||(25084730-25084797)
chr7 (1-107)||(9559017-9559123)
chr7 (12-114)||(39855770-39855871)
chr7 (11-72)||(32915972-32916033)
chr7 (14-106)||(989148-989239)
chr7 (11-107)||(7712331-7712426)
chr7 (1-68)||(12139332-12139400)
chr7 (12-115)||(33450523-33450627)
chr7 (1-72)||(47799898-47799969)
chr7 (1-114)||(7373873-7373985)
chr7 (15-107)||(44647984-44648076)
chr7 (1-103)||(7362574-7362676)
chr7 (1-107)||(16366524-16366630)
chr7 (1-107)||(21151158-21151264)
chr7 (12-70)||(24193610-24193668)
chr7 (1-70)||(46802331-46802400)
chr7 (12-116)||(47500236-47500341)
chr7 (39-107)||(5463867-5463934)
chr7 (12-68)||(45260429-45260485)
chr7 (1-72)||(8149615-8149686)
chr7 (1-106)||(29631054-29631156)
chr7 (52-118)||(44390835-44390900)
chr7 (28-85)||(18064588-18064643)
[»] chr4 (31 HSPs)
chr4 (1-107)||(19901881-19901987)
chr4 (2-107)||(23610649-23610754)
chr4 (11-112)||(36532641-36532741)
chr4 (44-115)||(15178628-15178699)
chr4 (1-107)||(5416429-5416534)
chr4 (11-114)||(56453777-56453879)
chr4 (12-111)||(1871294-1871392)
chr4 (20-106)||(5815267-5815350)
chr4 (1-116)||(56558285-56558400)
chr4 (1-73)||(5763159-5763231)
chr4 (1-72)||(56269074-56269145)
chr4 (1-107)||(3952133-3952239)
chr4 (1-107)||(34778427-34778533)
chr4 (44-109)||(33841766-33841830)
chr4 (13-110)||(42844148-42844244)
chr4 (12-112)||(47922324-47922425)
chr4 (12-107)||(18207003-18207098)
chr4 (1-72)||(23474117-23474188)
chr4 (13-68)||(24073634-24073689)
chr4 (1-72)||(48914516-48914587)
chr4 (16-64)||(30567922-30567970)
chr4 (1-72)||(5524453-5524524)
chr4 (13-109)||(13493290-13493387)
chr4 (1-72)||(36688186-36688257)
chr4 (40-107)||(39862562-39862629)
chr4 (1-72)||(50483554-50483625)
chr4 (1-107)||(33247093-33247199)
chr4 (36-73)||(5817976-5818013)
chr4 (16-101)||(36003216-36003300)
chr4 (12-107)||(12312438-12312534)
chr4 (1-65)||(33262557-33262621)
[»] scaffold0062 (2 HSPs)
scaffold0062 (16-90)||(58701-58774)
scaffold0062 (1-90)||(70797-70885)
[»] scaffold0250 (1 HSPs)
scaffold0250 (1-68)||(7153-7220)
[»] scaffold0121 (1 HSPs)
scaffold0121 (1-72)||(29567-29638)
[»] scaffold0012 (1 HSPs)
scaffold0012 (12-107)||(208080-208175)
[»] scaffold0035 (1 HSPs)
scaffold0035 (12-68)||(16399-16455)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-68)||(9203-9270)
[»] scaffold0171 (1 HSPs)
scaffold0171 (1-65)||(17311-17375)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 102 - 248
Target Start/End: Complemental strand, 34897940 - 34897794
Alignment:
Q  102 aggatcctaacccctctcacccacctctattacatgttgacttggattccaacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 201  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34897940 aggatcctaacccctctcacccacctcaattacatgttgacttggattccgacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 34897841  T
Q  202 tatcaaaattatagttctaccgaacaaaacggtattgatgatgtcca 248  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  34897840 tatcaaaattatagttctaccgaacaaaacggtattgaagatgtcca 34897794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 1995450 - 1995573
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | ||| ||| |||||| ||||||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||||||| || |||||||    
T  1995450 attaatgatggtgagactcacttattggtaggactcattatctattttctatgtctatctctcttcaaattgtgtacttccatttatttgataaaatgaa 1995549  T
Q  101 gaggatcctaacccctctcaccca 124  Q
    |||||||||||||| | |||||||    
T  1995550 gaggatcctaacccatgtcaccca 1995573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 52859272 - 52859346
Alignment:
Q  39 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 113  Q
    ||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||| |||||||| |||||    
T  52859272 tatctattttatgtgtctatctctctctaaattgtgtattttcatttattttatcaaatggagaggatcataacc 52859346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 10474507 - 10474400
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||| || |||||||| |||||| |||||||||||||||||||||||| |||||| ||||||  ||| |||||||||| | ||||||  |    
T  10474507 attaatgttggtggaactcacttaatagtaggatccattatctattttatgtgtctatatctctcaaaattgcatac-tccatttattatgtcaaataga 10474409  T
Q  101 gaggatcct 109  Q
    |||||||||    
T  10474408 gaggatcct 10474400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 19830500 - 19830394
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||||||||||||||||  ||||||||| ||||||||| |||| |||| |||   |  ||||||||||||  |||||| |    
T  19830500 attaatgatggtgggacccacttaatggtaggacccaccatctattttttgtgtctatttctccccaacttgcaaaactccatttattttgccaaatgga 19830401  T
Q  101 gaggatc 107  Q
    |||||||    
T  19830400 gaggatc 19830394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 27033657 - 27033763
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||| ||||||| ||||||||||||  ||||||||  ||||||||||||||||||| |||   |  |||||||||||||||||||| |    
T  27033657 attaatgatggtgggatccacttagtggtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatgga 27033756  T
Q  101 gaggatc 107  Q
    || ||||    
T  27033757 gatgatc 27033763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 43720016 - 43719910
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| ||||||||||||  || |||||| ||||||||||||||||||| |||   |  |||||||||||| | ||||| |    
T  43720016 attaatgatggtgggacccacttagtggtaggacccacaatttattttttgtgtctatctctctccaacttgcaaaactccatttattttgttaaatgga 43719917  T
Q  101 gaggatc 107  Q
    |||||||    
T  43719916 gaggatc 43719910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 24754673 - 24754769
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    |||||||||||||| |||||||||  |  ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  |||||| ||||||||    
T  24754673 gtgggacccacttagtggtaggacataccatctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatc 24754769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 24763670 - 24763766
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    |||||||||||||| |||||||||  |  ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  |||||| ||||||||    
T  24763670 gtgggacccacttagtggtaggacataccatctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatc 24763766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 44637961 - 44638052
Alignment:
Q  14 ggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 106  Q
    ||||| ||||||| |||||  ||| |||||||||||||||| |||||||||| ||||||  ||| |||||||||||| |||||||| ||||||    
T  44637961 ggacctacttaatagtagggtccactatctattttatgtgtttatctctctcaaaattgcatac-tccatttattttgtcaaatgatgaggat 44638052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 2229989 - 2230056
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| | |||| | ||||||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  2229989 attaatgatggtggaaaccacttagtggtaggacccatcatctattttttgtgtctatctctctccaa 2230056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 29586342 - 29586447
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | ||| |||||||||||| ||| |||  | ||||||||||||||||||||||||||||||| ||  ||| |||||||||| |   |||||||    
T  29586342 attaatgatggtgagacccacttaatagtaagacttactatctattttatgtgtctatctctctccaaactgcatac-tccatttattatgctaaatgaa 29586440  T
Q  101 gaggatc 107  Q
    |||||||    
T  29586441 gaggatc 29586447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 33632849 - 33632899
Alignment:
Q  22 ttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||||||||||    
T  33632849 ttaatagtaggatccactatctattttatgtgtctatctctctccaaattg 33632899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 51982636 - 51982549
Alignment:
Q  19 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    ||||||||| ||| ||||| || ||||||||||| |||||||||||||||||||  | ||||||||||||||   ||||| ||||||||    
T  51982636 cacttaatgatagaacccactaactattttatgtatctatctctctccaaattgcat-cttccatttatttttataaatggagaggatc 51982549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 54911660 - 54911732
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgt 73  Q
    ||||||| | |||| || || |||||||||||||||| || ||||||||||| ||||||||||| ||||||||    
T  54911660 attaatgatggtggaactcatttaatggtaggacccactacctattttatgtctctatctctcttcaaattgt 54911732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34373837 - 34373904
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| | |||||||| | ||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  34373837 attaatgatggtgggacctaattagtggtaggacccaccatctattttttgtgtctatctctctccaa 34373904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 48084836 - 48084939
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatccta 110  Q
    ||||||||||||| |||| |||||||  ||||||| || |||||||||||||| ||||||||   |  || |||||||||| |||||| |||||||| ||    
T  48084836 tgggacccacttagtggttggacccaccatctattcttttgtgtctatctctccccaaattgcaaaactcaatttattttagcaaatggagaggatctta 48084935  T
Q  111 accc 114  Q
    ||||    
T  48084936 accc 48084939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 30235484 - 30235416
Alignment:
Q  40 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 109  Q
    ||||||||| | ||||||||||||| |||||||  |||| |||||||||||| |||||||||| ||||||    
T  30235484 atctattttttatgtctatctctcttcaaattgcatact-ccatttattttaacaaatgaagatgatcct 30235416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 34373654 - 34373593
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctct 62  Q
    ||||||| | |||||||||||||| ||||||||||||  |||||||||  ||||||||||||    
T  34373654 attaatgatggtgggacccacttagtggtaggacccaccatctatttttagtgtctatctct 34373593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 47750361 - 47750274
Alignment:
Q  14 ggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaaga 102  Q
    |||| ||||||||| || ||| | ||||||||||| ||||| ||| ||||| |||||||| ||| | |||||||||| |||||||||||    
T  47750361 ggactcacttaatgataagactctttatctattttttgtgtttatgtctcttcaaattgtatacct-catttattttgtcaaatgaaga 47750274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 31523737 - 31523666
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| | |||||||||||||| |  |||||||||  |  |||||| |||||||||||||||||||||||    
T  31523737 attaatgatggtgggacccacttagtaataggacccaccacttattttttgtgtctatctctctccaaattg 31523666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 25285885 - 25285843
Alignment:
Q  22 ttaatggtaggacccattatctattttatgtgtctatctctct 64  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||    
T  25285885 ttaatgataggatccactatctattttatgtgtctatctctct 25285843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 46167416 - 46167466
Alignment:
Q  18 ccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| ||||||||||||  || |||||| |||||||||||||||||||    
T  46167416 ccacttagtggtaggacccaccatatattttttgtgtctatctctctccaa 46167466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 550875 - 550814
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||||||||||||| ||||| |||  ||||||||| ||| | ||||| |||||||||||    
T  550875 gtgggacccacttaatgataggatccaccatctattttttgtatatatctttctccaaattg 550814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 40851793 - 40851886
Alignment:
Q  14 ggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    ||||||||||| |||| | |||||  ||||||||| ||||||||||| ||||||| |||   |  |||||||||||| ||||||  ||||||||    
T  40851793 ggacccacttagtggttgaacccaccatctattttttgtgtctatctttctccaacttgcaaaactccatttattttgtcaaattgagaggatc 40851886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 7215921 - 7215807
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| |||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  7215921 attaatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctctctccaaattgtgcacttccatttattttatcaaatgga 7215822  T
Q  101 gaggatcctaacccc 115  Q
    |||||| ||||||||    
T  7215821 gaggatactaacccc 7215807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 2800670 - 2800566
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatccta 110  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  2800670 gtgggacccacttaatggtatgatccactatctattttatgtgtctatctctctccaaattgtgtatttccattaattttatcaaatggagaggatccta 2800571  T
Q  111 acccc 115  Q
    |||||    
T  2800570 acccc 2800566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 4804454 - 4804569
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  |||||| |    
T  4804454 attaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgtaaaactccatttattttgccaaatgga 4804553  T
Q  101 gaggatcctaacccct 116  Q
    ||||||| | ||||||    
T  4804554 gaggatcttcacccct 4804569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 17828626 - 17828532
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    ||||| ||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||  ||| |||| ||||| || |||||| ||||||||    
T  17828626 tgggatccacttaatagtagaatccactatctattttatgtgtctatctctctccaaattgcatac-tccaattattataccaaatgtagaggatc 17828532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 7162090 - 7162196
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| | ||||||||||  ||||||||  ||||||||||||||||||| |||   |  |||||||||||||||||||| |    
T  7162090 attaatgatggtgggacccacttagtagtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatgga 7162189  T
Q  101 gaggatc 107  Q
    || ||||    
T  7162190 gatgatc 7162196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 21159438 - 21159332
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| ||||||||| ||||||||| |||   |  | ||||||||||| |||||| |    
T  21159438 attaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatttctctccaacttgcaaaacttcatttattttaacaaatgga 21159339  T
Q  101 gaggatc 107  Q
    |||||||    
T  21159338 gaggatc 21159332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 23936269 - 23936365
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtcta--tctctctccaaattgtgtacttccatttattttatcaaatgaagagga 105  Q
    ||||||||||||||||||||| | ||  |||| || |||||||||||  ||||||||| |||||||||||| |||| | ||||||||||| ||||||    
T  23936269 gtgggacccacttaatggtagaatccgctatccatcttatgtgtctatctctctctccgaattgtgtactttcattcaatttatcaaatggagagga 23936365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 27826544 - 27826608
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 65  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||    
T  27826544 attaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctc 27826608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 17944168 - 17944274
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||| ||| |||||||||| |  ||||||||| ||||||||||||||||||| ||    |  ||||||||||||  ||||||||    
T  17944168 attaatgatggtgggacccatttagtggtaggacctaccatctattttttgtgtctatctctctccaacttacaaaactccatttattttgccaaatgaa 17944267  T
Q  101 gaggatc 107  Q
    |||||||    
T  17944268 gaggatc 17944274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 227622 - 227526
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    ||||| ||||||| ||||||||||||  ||||||| || |||||||||||||||||||| ||   |  ||||||||||||| |||||| ||||||||    
T  227622 tgggatccacttagtggtaggacccaccatctattcttttgtgtctatctctctccaaaatgcaaaactccatttattttagcaaatggagaggatc 227526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 12412643 - 12412710
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| | |||| ||||||||| ||||||||||||  ||||||||  |||||||||||||||||||    
T  12412643 attaatgatggtggaacccacttagtggtaggacccaccatctatttcttgtgtctatctctctccaa 12412710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 13089818 - 13089751
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| | ||||| |||||||| ||||||||||||  |||||| || |||||||||||||||||||    
T  13089818 attaatgatggtggggcccacttagtggtaggacccaccatctatattttgtgtctatctctctccaa 13089751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 24484885 - 24484956
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| | |||||||||||||| || |||||||||  |  |||||| |||||||||||||||||||||||    
T  24484885 attaatgatggtgggacccacttagtgataggacccaccacttattttttgtgtctatctctctccaaattg 24484956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 9953035 - 9952993
Alignment:
Q  72 gtgtacttccatttattttatcaaatgaagaggatcctaaccc 114  Q
    ||||||||||||||||||||||||||| |||||||| ||||||    
T  9953035 gtgtacttccatttattttatcaaatggagaggatcttaaccc 9952993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 9954370 - 9954332
Alignment:
Q  26 tggtaggacccattatctattttatgtgtctatctctct 64  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  9954370 tggtgggacccactatctattttatgtgtctatctctct 9954332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 13888581 - 13888520
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattg 72  Q
    ||||||||| |||||||||||| |||  ||||||| || ||||| |||||||||||||||||    
T  13888581 tgggacccagttaatggtaggaaccaccatctattattttgtgtatatctctctccaaattg 13888520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 1249215 - 1249150
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||  | ||||| |||||||||||    
T  1249215 attaatgatggtgggacccacttagtggtaggacccaccatctattt--tttgtctgtctctctccaa 1249150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 29229149 - 29229204
Alignment:
Q  50 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 106  Q
    |||||||||||||||||||||||  ||| |||||||||| || |||||| |||||||    
T  29229149 tgtgtctatctctctccaaattgcatac-tccatttattataccaaatggagaggat 29229204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 39426216 - 39426330
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| |||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39426216 attaatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgga 39426315  T
Q  101 gaggatcctaacccc 115  Q
    || ||| ||||||||    
T  39426316 gatgatactaacccc 39426330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 32887849 - 32887735
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||| |||||||||||| ||| ||| |||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||    
T  32887849 attaatgatggtgggacccatttaatggtaggatccactatttattttatgtgtctatctttctctaaactgtgtac-tccatttattttatcaaatgaa 32887751  T
Q  101 gaggatcctaacccct 116  Q
    ||||||||||| ||||    
T  32887750 gaggatcctaatccct 32887735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 26372258 - 26372362
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||||| ||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||  ||||| | |||||||||||||||||||||||  |    
T  26372258 attaatggtggtgggacccacttaatggtaggatctattgtctattttacgtgtctatctctct--aaattatctacttccatttattttatcaaattga 26372355  T
Q  101 gaggatc 107  Q
    |||||||    
T  26372356 gaggatc 26372362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 35534825 - 35534741
Alignment:
Q  27 ggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 113  Q
    ||||||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  35534825 ggtaggatccactatctattttatgtgtctatctctct--aaattgtgtacttccatttattttatcaaatggagaggatactaacc 35534741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26860119 - 26860010
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||| ||||||| || ||||||| | |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||  |    
T  26860119 attaatgattgtgggatccacttagtgataggacctactatctattttatgtgtctatctctcttcaaattatgtac-tccatttattttatcaaataga 26860021  T
Q  101 gaggatcctaa 111  Q
    || ||||||||    
T  26860020 gatgatcctaa 26860010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 50294132 - 50294026
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | || ||| ||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  ||||||||    
T  50294132 attaatgatggtaggatccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgccaaatgaa 50294033  T
Q  101 gaggatc 107  Q
    |||||||    
T  50294032 gaggatc 50294026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 7840738 - 7840681
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||||| |||||||||||||||||| ||||||||  |||||||||||||||||||    
T  7840738 gtgggacccgcttaatggtaggacccatcatctatttcttgtgtctatctctctccaa 7840681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5047450 - 5047379
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| | ||||||||||| || |||||||| |||||||||||||||||  || ||||||||||||||||    
T  5047450 attaatgatggtgggacccacatagtggtaggatccattatctattttatgcatcaatctctctccaaattg 5047379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 12151773 - 12151840
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| ||||||| |||||||||||    
T  12151773 attaatgatggtgggacccacttagtggtaggacccacaatctattttttgtgtctttctctctccaa 12151840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 32618807 - 32618911
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||| ||||||| |||||| ||| ||||||||| || |||| ||||||||||||||||  ||| |||||||||| |  ||||||||    
T  32618807 attaatgatggtgggacctacttaatagtaggatccactatctattt-atatgtccatctctctccaaattggatac-tccatttattatgccaaatgaa 32618904  T
Q  101 gaggatc 107  Q
    |||||||    
T  32618905 gaggatc 32618911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 50484402 - 50484498
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    |||||||||||||| |||| | |||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  50484402 gtgggacccacttagtggttgtacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatc 50484498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 18976363 - 18976260
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatccta 110  Q
    ||||||| |||||||||| ||| |||  ||||||| || |||||||||||||||||||||||   |  || |||||||||| |||||| |||||||| ||    
T  18976363 tgggacctacttaatggttggatccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttattttagcaaatggagaggatctta 18976264  T
Q  111 accc 114  Q
    ||||    
T  18976263 accc 18976260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 24977256 - 24977318
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgt 73  Q
    |||| ||||||||| |||||||| |||  ||||||||| |||||||||||||||| |||||||    
T  24977256 gtggaacccacttagtggtaggatccaccatctattttttgtgtctatctctctctaaattgt 24977318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30077713 - 30077642
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| ||||||||| |||||| || ||| |||||  |  |||||| |||||||||||||||||||||||    
T  30077713 attaatgatagtgggactcacttagtgatagaacccaccacttattttttgtgtctatctctctccaaattg 30077642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 48327210 - 48327156
Alignment:
Q  14 ggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||||||| ||||||||| ||  ||||||||| | |||||||||||||||||    
T  48327210 ggacccacttagtggtaggactcaccatctattttttttgtctatctctctccaa 48327156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 49384680 - 49384627
Alignment:
Q  52 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 106  Q
    |||||||||||||| ||||||| || |||||||||||||| |||||| |||||||    
T  49384680 tgtctatctctctctaaattgtata-ttccatttattttaacaaatggagaggat 49384627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 1228560 - 1228496
Alignment:
Q  50 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 114  Q
    ||||||| |||||||||||||||   |  |||||||||||||  |||||||||||||| ||||||    
T  1228560 tgtgtctgtctctctccaaattgcaaaactccatttattttagtaaatgaagaggatcttaaccc 1228496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 12380907 - 12380831
Alignment:
Q  40 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 116  Q
    ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| |||||||| | ||||||    
T  12380907 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcacccct 12380831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 12384974 - 12384898
Alignment:
Q  40 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 116  Q
    ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| |||||||| | ||||||    
T  12384974 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcacccct 12384898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 24413351 - 24413291
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctc 61  Q
    ||||||| | |||||||||| |||||| |||||||||  ||| ||||| ||||||||||||    
T  24413351 attaatgatggtgggacccatttaatgataggacccaccatccattttttgtgtctatctc 24413291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 27982072 - 27982171
Alignment:
Q  15 gacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 114  Q
    |||||| |||||| | |||||||  || |||||| | ||||||| |||||||||||||  | ||||||||||||||   ||||| |||||||| ||||||    
T  27982072 gacccatttaatgatgggacccaacatatattttttatgtctatatctctccaaattgcat-cttccatttatttttataaatggagaggatcttaaccc 27982170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 45978041 - 45978117
Alignment:
Q  31 ggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    |||||||  ||||||||| ||| ||||||||||||||| |||   |  |||||||||||||||||||  ||||||||    
T  45978041 ggacccaccatctattttttgtatctatctctctccaacttgcaaaactccatttattttatcaaatagagaggatc 45978117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 30709116 - 30709228
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||| |    
T  30709116 attaatgatggtgggatccacttagtggtaggacccaatatctattttatgtgtctatctctctccaaattgtgtactttcattgattttataagatgga 30709215  T
Q  101 gaggatcctaacc 113  Q
    |||||||||||||    
T  30709216 gaggatcctaacc 30709228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 4446965 - 4446852
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| |||||  ||||| ||| |||||||| ||| |||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |    
T  4446965 attaatgatagtgaaacccaattagtggtaggatccactatctattttatgtgtctatctctcttcaaattgtacacttccatttattttatcaaatgga 4446866  T
Q  101 gaggatcctaaccc 114  Q
    |||||| |||||||    
T  4446865 gaggatactaaccc 4446852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 19908786 - 19908899
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||||  ||||||| || ||||||||||||||||||||||| ||||||||||  ||| |||||||||| |||||||||||    
T  19908786 attaatgatggtgggacccacttaaaagtaggactcactatctattttatgtgtctatctc-ctccaaattgcatac-tccatttattatatcaaatgaa 19908883  T
Q  101 gaggatcctaacccct 116  Q
    ||||||| | ||||||    
T  19908884 gaggatctttacccct 19908899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 30217517 - 30217592
Alignment:
Q  39 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 114  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||  |||||||||||||||    
T  30217517 tatctattttatgtgtctatctcactctaaattgtgtgcttccatttattttatcaaatagagaggatcctaaccc 30217592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 31618836 - 31618724
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | ||||||| ||||||||| || ||| || |||||||||||| | ||||||| |||||||||||| ||| |||||||  ||||||||||| |    
T  31618836 attaatgattgtgggactcacttaatgatatgactcactatctattttatatatctatctttctccaaattgtatac-tccattt-ctttatcaaatgga 31618739  T
Q  101 gaggatcctaacccc 115  Q
    |||||||||||||||    
T  31618738 gaggatcctaacccc 31618724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 30721632 - 30721564
Alignment:
Q  45 ttttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 115  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||||||||||| || ||||| |||||||    
T  30721632 ttttatgtgtctatctctc--caaattgtgtacttctatttattttatcaaatggagcggatcttaacccc 30721564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 13238687 - 13238793
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||  ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| |    
T  13238687 attaatgatggtgggacccacttggtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgccaaatgga 13238786  T
Q  101 gaggatc 107  Q
    |||||||    
T  13238787 gaggatc 13238793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 15709789 - 15709862
Alignment:
Q  16 acccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 90  Q
    |||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||  || |||||||||||||    
T  15709789 acccacttaatggtaggatccactatctattttatatgtttatctctctccaaattgcata-ttccatttatttt 15709862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 35316831 - 35316937
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| |||||||| |||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| |    
T  35316831 attaatgatggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatgga 35316930  T
Q  101 gaggatc 107  Q
    |||||||    
T  35316931 gaggatc 35316937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 36929743 - 36929810
Alignment:
Q  22 ttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 90  Q
    ||||||||||||| || || |||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  36929743 ttaatggtaggacacactacctattttatgtgtctatctctctccaaattgcatac-tccatttatttt 36929810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 28564898 - 28564961
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctct 64  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| |||||||||||||||    
T  28564898 attaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctct 28564961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 2063399 - 2063472
Alignment:
Q  40 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 114  Q
    ||||||||| |||||||||||||||||||||||   || || ||||||||| |||||||||||||||| ||||||    
T  2063399 atctattttttgtgtctatctctctccaaattgcaaac-tctatttattttgtcaaatgaagaggatcttaaccc 2063472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 30857747 - 30857638
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | ||| || ||| ||||| |||||| |||||||||||||| |||||||| |||||| ||||||   ||| |||||||||||| | ||||| |    
T  30857747 attaatgatggtgtgatccatttaatagtaggatccattatctattttttgtgtctacctctcttcaaattacatac-tccatttattttgtgaaatgga 30857649  T
Q  101 gaggatcctaa 111  Q
    |||||||||||    
T  30857648 gaggatcctaa 30857638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 35315347 - 35315286
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| || ||||| ||| || |||||||||||||||||||||||||||||| |||||||    
T  35315347 gtgggactcaattaatagtaagatccattatctattttatgtgtctatctctcttcaaattg 35315286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 38397097 - 38397158
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| |||||||| |||| ||||| |||||||||||| ||||||||||||| |||||||    
T  38397097 gtgggactcacttaatagtagcacccactatctattttatttgtctatctctcttcaaattg 38397158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 34512094 - 34512022
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgt 73  Q
    ||||||| | ||| |||| ||||||| |||  ||||| |||||||||||||||||||||| ||||||||||||    
T  34512094 attaatgattgtgagacctacttaatagtataacccactatctattttatgtgtctatctttctccaaattgt 34512022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8988861 - 8988932
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| | |||||||||||||| || ||||||| || |  |||||| |||||||||||||||||||||||    
T  8988861 attaatgatggtgggacccacttagtgataggacctatcacttattttttgtgtctatctctctccaaattg 8988932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 21454563 - 21454494
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatt 71  Q
    ||||||| | |||| ||||||||||||||| ||||||  ||||||||| |||||||||||||||| |||||    
T  21454563 attaatgatggtggaacccacttaatggtatgacccacaatctatttt-tgtgtctatctctctctaaatt 21454494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 22061498 - 22061433
Alignment:
Q  41 tctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    |||||||||||||||||||||||| |||||||  ||||| |||||||||| ||||||  ||||||||    
T  22061498 tctattttatgtgtctatctctcttcaaattgcatactt-catttattttgtcaaattgagaggatc 22061433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 35315521 - 35315620
Alignment:
Q  14 ggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 113  Q
    |||| ||||||||| |||||||||  | ||||| | ||||| |||||||||||||||||  | ||||||||||||||   ||||| |||||||| |||||    
T  35315521 ggactcacttaatgataggacccaccacctattgtttgtgtttatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaacc 35315619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 374999 - 375070
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| | |||||||||||||| |  |||||||||  |  |||||| |||||||||||||||||||||||    
T  374999 attaatgatggtgggacccacttagtaataggacccaccacttattttttgtgtctatctctctccaaattg 375070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 23259556 - 23259489
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| | |||||| ||||||| | ||||||||||  | ||||||| |||||||||||||||||||    
T  23259556 attaatgatggtgggatccacttagtagtaggacccaccagctattttttgtgtctatctctctccaa 23259489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 6946335 - 6946384
Alignment:
Q  64 tccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 113  Q
    ||||||||||| | || ||||||||||||||||||  |||||||||||||    
T  6946335 tccaaattgtgcattttcatttattttatcaaatggggaggatcctaacc 6946384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 15722240 - 15722328
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 90  Q
    ||||||| | |||| ||||| ||||||||||||   | |||||||||||| ||| ||||||| |||||||||  || |||||||||||||    
T  15722240 attaatgatggtggaacccatttaatggtaggataaactatctattttatatgtttatctctttccaaattgcata-ttccatttatttt 15722328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 19905897 - 19905958
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| ||||||||  || | ||||  |||||||||||||||||||||||||| ||||||    
T  19905897 gtgggactcacttaataatatgtcccaccatctattttatgtgtctatctctctcaaaattg 19905958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 42761734 - 42761831
Alignment:
Q  16 acccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 113  Q
    ||||||| | |||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||||||||||||    
T  42761734 acccactgagtggtaggatccactatctattttatgtgtctatctctcttcaaattgcgtacttccatttattttattaagtgaagaggatcctaacc 42761831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 21360299 - 21360400
Alignment:
Q  18 ccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgta----cttccatttattttatcaaatgaagaggatcctaacc 113  Q
    ||||||||||||| || | ||||||||| |||||||| |||||||||||||||| ||||    |||| ||||||||||||||||| ||||||||||||||    
T  21360299 ccacttaatggtatgatctattatctatattatgtgtttatctctctccaaattatgtatgtacttc-atttattttatcaaatggagaggatcctaacc 21360397  T
Q  114 cct 116  Q
    |||    
T  21360398 cct 21360400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30426738 - 30426671
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  30426738 attaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaa 30426671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 18689512 - 18689585
Alignment:
Q  16 acccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 90  Q
    |||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||  || |||||||||||||    
T  18689512 acccacttaatggtaggatccactatctattttatatgtttatctctctccaaattgcata-ttccatttatttt 18689585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 24557239 - 24557162
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 90  Q
    |||||| |||||||||||||||||||||| ||||||||||| | ||||||| |||||||||  | ||||||||||||||    
T  24557239 tgggactcacttaatggtaggacccattacctattttatgtctatatctctttccaaattgcat-cttccatttatttt 24557162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 28069725 - 28069831
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| ||||||| ||||||||||| |||   |  ||||||||||||  |||||| |    
T  28069725 attaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctttctctctccaacttgcaaatctccatttattttgccaaatgga 28069824  T
Q  101 gaggatc 107  Q
    |||||||    
T  28069825 gaggatc 28069831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 36991362 - 36991468
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| ||||||||||||| ||||||||  | ||||||||||||||||| |||   |  ||||||||||||  |||||| |    
T  36991362 attaatgatggtgggacccacttagtggtaggacccatcatctatttcttatgtctatctctctccaacttgcaaaactccatttattttgccaaatgga 36991461  T
Q  101 gaggatc 107  Q
    |||||||    
T  36991462 gaggatc 36991468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 26749617 - 26749546
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| | |||||||||||||| || |||||||||| |  |||||| |||||||||||||||||||||||    
T  26749617 attaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctctctccaaattg 26749546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 17520403 - 17520459
Alignment:
Q  16 acccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||||||| ||||||| |  |||||||||||||||||||| |||||||||||||    
T  17520403 acccacttaatagtaggactcgctatctattttatgtgtctatatctctccaaattg 17520459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 42338103 - 42338008
Alignment:
Q  13 gggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 109  Q
    ||||| |||||||| |||  | ||| |||||||||||  ||| ||| |||||||||||| | |||||  ||||||||||||||||||||||||||||    
T  42338103 gggacacacttaatagtacaatccactatctattttacatgtatatatctctccaaattatatactta-atttattttatcaaatgaagaggatcct 42338008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 6014200 - 6014307
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatga 99  Q
    ||||||| || | ||| |||||||||||||||||| || ||||||| || ||||||||||| |||||||||||   |  || |||||||||| ||||||     
T  6014200 attaatgataataggatccacttaatggtaggacctatcatctattcttttgtgtctatctttctccaaattgcaaaactctatttattttagcaaatgg 6014299  T
Q  100 agaggatc 107  Q
    ||||||||    
T  6014300 agaggatc 6014307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 36748560 - 36748492
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 70  Q
    ||||||| | |||||| |||||||||||||||||||  | |||||||| ||||||||||| |||||||||    
T  36748560 attaatgatggtgggatccacttaatggtaggacccgctgtctatttt-tgtgtctatctatctccaaat 36748492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 37966487 - 37966397
Alignment:
Q  26 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctc 117  Q
    |||||||||| |  ||||||||| ||||| ||||||||| |||||||   | |||||||||||||  |||||| |||||||| |||||||||    
T  37966487 tggtaggacctacaatctattttttgtgtttatctctcttcaaattgcaaa-ttccatttattttgccaaatggagaggatcttaacccctc 37966397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10672581 - 10672519
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctc 63  Q
    ||||||| | ||||||| |||||| |||||||| |||  ||||||||| ||||||||||||||    
T  10672581 attaatgatggtgggactcacttagtggtaggatccaccatctattttttgtgtctatctctc 10672519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 20169125 - 20169190
Alignment:
Q  52 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctct 118  Q
    |||||||||||||||||||||  | ||||||||||||||   ||||| |||||||| ||||||||||    
T  20169125 tgtctatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaacccctct 20169190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 40695298 - 40695249
Alignment:
Q  19 cacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    |||||| |||||||||| |  ||||||||| |||||||||||||||||||    
T  40695298 cacttagtggtaggacctaccatctattttttgtgtctatctctctccaa 40695249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 29341001 - 29341106
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||  ||| |||||||||| || |||||| |    
T  29341001 attaatgatggtgggacccacttaatagtaggacccactatctattttctgtgtctatctctctccaaattgcatac-tccatttattataccaaatgga 29341099  T
Q  101 gaggatc 107  Q
    |||||||    
T  29341100 gaggatc 29341106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 35660678 - 35660572
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| |    
T  35660678 attaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatgga 35660579  T
Q  101 gaggatc 107  Q
    |||||||    
T  35660578 gaggatc 35660572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 4895804 - 4895699
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  ||||| ||    
T  4895804 attaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaataaa 4895705  T
Q  101 gaggat 106  Q
    ||||||    
T  4895704 gaggat 4895699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 11775809 - 11775905
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    |||||||||||||| |||||||| |||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||| |||||| ||||||||    
T  11775809 gtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatggagaggatc 11775905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 18625490 - 18625384
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| ||||||| ||||||||||| |||   |  ||||||||||||  |||||| |    
T  18625490 attaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctttctctctccaacttgcaaatctccatttattttgccaaatgga 18625391  T
Q  101 gaggatc 107  Q
    |||||||    
T  18625390 gaggatc 18625384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 32129686 - 32129580
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| ||||||||||||  |||||||||  |||||||||||||||||| || |  |  ||||||||||||  |||||| |    
T  32129686 attaatgatggtgggacccacttagtggtaggacccaccatctatttttggtgtctatctctctccaacttataaaactccatttattttgccaaatgga 32129587  T
Q  101 gaggatc 107  Q
    |||||||    
T  32129586 gaggatc 32129580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 37266737 - 37266843
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| ||||| ||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| |    
T  37266737 attaatgatggtgggacccacttagtggtatgacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatgga 37266836  T
Q  101 gaggatc 107  Q
    |||||||    
T  37266837 gaggatc 37266843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 43309114 - 43309220
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||| ||||| ||||||||| || ||| |||||||||| | ||||||||||||||||| |||   |  ||||||||||||||||||| ||    
T  43309114 attaatgatggtggaacccatttaatggtaagatccactatctattttttatgtctatctctctccaacttgcaaaactccatttattttatcaaataaa 43309213  T
Q  101 gaggatc 107  Q
    |||||||    
T  43309214 gaggatc 43309220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 14349809 - 14349876
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| ||||||| |||||||||||    
T  14349809 attaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctgtctctctccaa 14349876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 31653041 - 31653112
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| | ||| ||| |||||||| ||||||| |  |||||||||||||||| |||||||||||||||||    
T  31653041 attaatgattgtgagactcacttaatagtaggactcgctatctattttatgtgtttatctctctccaaattg 31653112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 34827208 - 34827287
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 90  Q
    |||||||||||||| |||||||| |||  ||||||||| | ||||||||||||||||| |||  ||  ||||||||||||    
T  34827208 gtgggacccacttagtggtaggatccaccatctattttttttgtctatctctctccaacttgcataactccatttatttt 34827287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 40753231 - 40753164
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| | |||||||||||||| ||||||||||||  || |||||| ||||||||||| |||||||    
T  40753231 attaatgatggtgggacccacttagtggtaggacccaccatatattttttgtgtctatctttctccaa 40753164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 9460662 - 9460597
Alignment:
Q  43 tattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 109  Q
    |||| |||||||||||||||||||||||||  ||| || |||||||||| |||||| ||||||||||    
T  9460662 tattatatgtgtctatctctctccaaattgcatac-tctatttattttaccaaatggagaggatcct 9460597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 13032124 - 13032230
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||| ||| ||||||||| ||  ||||||||  ||||||||||||||||||| |||   |  ||||||||||||  |||||| |    
T  13032124 attaatgatggtgggacccatttagtggtaggactcaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatgga 13032223  T
Q  101 gaggatc 107  Q
    |||||||    
T  13032224 gaggatc 13032230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 10362069 - 10362012
Alignment:
Q  15 gacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||||||||||||||| ||| || | ||||||||| ||||||||||||| |||||    
T  10362069 gacccacttaatggtaggatccactaccaattttatgtctctatctctctcctaattg 10362012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 18653385 - 18653438
Alignment:
Q  19 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||||||||| || || |||||||||| ||||||||||||||| |||||||    
T  18653385 cacttaatggtagaactcactatctattttttgtgtctatctctcttcaaattg 18653438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 39902421 - 39902525
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||| | ||| ||| ||||||||||||  ||||||||  ||||| ||||||||||||| ||||  |  |||||||||||| ||||||| |    
T  39902421 attaatgatggtggaatccatttagtggtaggacccaccatctatttcttgtgtttatctctctccaacttgtaaaactccatttattttgtcaaatgga 39902520  T
Q  101 gagga 105  Q
    |||||    
T  39902521 gagga 39902525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36290608 - 36290679
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| | |||||| ||||||| || |||||||||  |  |||||| |||||||||||||||||||||||    
T  36290608 attaatgatggtgggatccacttagtgataggacccaccacttattttttgtgtctatctctctccaaattg 36290679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 2984459 - 2984389
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatt 71  Q
    ||||||| | |||||||||| ||| || |||||  ||| |  |||||||||||||||||||||||||||||    
T  2984459 attaatgatggtgggacccatttagtgataggattcatcacttattttatgtgtctatctctctccaaatt 2984389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 14688597 - 14688643
Alignment:
Q  18 ccacttaatggtaggacccattatctattttatgtgtctatctctct 64  Q
    |||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  14688597 ccacttaatggtagaatccaatatctattttatgtgtcgatctctct 14688643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 21213953 - 21213987
Alignment:
Q  80 ccatttattttatcaaatgaagaggatcctaaccc 114  Q
    ||||||||||||||||||| |||||||||||||||    
T  21213953 ccatttattttatcaaatggagaggatcctaaccc 21213987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 27428949 - 27428879
Alignment:
Q  2 ttaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    |||||| | |||| || |||||||||||||||  ||  ||||||||| ||||||||||||| |||||||||    
T  27428949 ttaatgatggtggaactcacttaatggtaggattcaccatctattttttgtgtctatctctttccaaattg 27428879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 3057205 - 3057152
Alignment:
Q  19 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||||||||||| |||  ||||||||| ||||| ||||||| |||||||||    
T  3057205 cacttaatggtaggatccaccatctattttttgtgtttatctctatccaaattg 3057152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 31279933 - 31279990
Alignment:
Q  14 ggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatt 71  Q
    |||||||| ||||| |||||||||  || ||||||||||||||| | |||||||||||    
T  31279933 ggacccacataatgataggacccacaatttattttatgtgtctagcactctccaaatt 31279990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 31546503 - 31546563
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||| ||||||||| ||||| ||||  ||||||||||| |||||| |||||| |||||||    
T  31546503 tgggatccacttaatagtagggcccaccatctattttatatgtctacctctcttcaaattg 31546563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 47270580 - 47270668
Alignment:
Q  25 atggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 114  Q
    |||||||| || ||||||||||| |||||||||||| |||| |||||||||| ||||||||||||||||||||  |||||||||||||||    
T  47270580 atggtagggcctattatctattt-atgtgtctatctatctctaaattgtgtaattccatttattttatcaaatagagaggatcctaaccc 47270668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 40023325 - 40023215
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||||| |||||||||||||||||||| || |||||| ||||||||| ||||||||| |||||||||||| ||| ||  |||||||| ||||||  |    
T  40023325 attaatggtggtgggacccacttaatggtaagatccattaactattttatatgtctatctttctccaaattgtatac-tcgttttattttttcaaataga 40023227  T
Q  101 gaggatcctaac 112  Q
    |||||| |||||    
T  40023226 gaggattctaac 40023215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4888473 - 4888579
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||| ||||| |||||||||||| |||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| |    
T  4888473 attaatgatggtgggacctacttagtggtaggacccactatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgtcaaatgga 4888572  T
Q  101 gaggatc 107  Q
    |||||||    
T  4888573 gaggatc 4888579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 29844316 - 29844372
Alignment:
Q  20 acttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgta 76  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  29844316 acttagtggtagaacccactatctattttatgtgtctatctctctccaaattgtgta 29844372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 25084797 - 25084730
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  25084797 attaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaa 25084730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 9559123 - 9559017
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| ||| ||||||||||||||| |||   |  ||||||||||||  |||||| |    
T  9559123 attaatgatggtgggacccacttagtggtaggacccaccatctattttttgtatctatctctctccaacttgcaaatctccatttattttgccaaatgga 9559024  T
Q  101 gaggatc 107  Q
    |||||||    
T  9559023 gaggatc 9559017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 39855871 - 39855770
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaa 111  Q
    ||||||||||||| |||||||||| |  |||| |||||||||||||||||||||||||||    || |||||||| ||| |||||||||||| ||| |||    
T  39855871 tgggacccacttagtggtaggaccgaccatcttttttatgtgtctatctctctccaaattacaaac-tccatttaatttgtcaaatgaagagaatcttaa 39855773  T
Q  112 ccc 114  Q
    |||    
T  39855772 ccc 39855770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 32915972 - 32916033
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| ||||||||||||||||||| ||| |||||| ||||||||||||||| |||||||    
T  32915972 gtgggactcacttaatggtaggacccactatttattttttgtgtctatctctcttcaaattg 32916033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 989148 - 989239
Alignment:
Q  14 ggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 106  Q
    ||||| ||||| |||||||||||| ||| |||||| |||||||||||||||||||||||   || |||||||| ||| ||||||| |||||||    
T  989148 ggacctacttagtggtaggacccactatatattttttgtgtctatctctctccaaattgcaaac-tccatttaatttgtcaaatggagaggat 989239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 7712426 - 7712331
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    |||| ||||||||||||||||||| || ||||||| |||||| |||||||||||| ||||||  | ||||||||||||||   ||||| ||||||||    
T  7712426 gtggcacccacttaatggtaggactcactatctatcttatgtctctatctctctctaaattgcat-cttccatttatttttataaatggagaggatc 7712331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 12139332 - 12139400
Alignment:
Q  1 attaatggtagtgggaccc-acttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| | ||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  12139332 attaatgatggtgggaccccacttaatggtaggacccaccatctattttttgtgtctatctctctccaa 12139400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 33450523 - 33450627
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatccta 110  Q
    ||||||||||||| |||| |||||||  ||||||| || |||||||||||||||||||||||   |  || |||||||||| |||||| |||||||| ||    
T  33450523 tgggacccacttagtggttggacccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttattttagcaaatggagaggatctta 33450622  T
Q  111 acccc 115  Q
    |||||    
T  33450623 acccc 33450627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 47799969 - 47799898
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| | |||||||||||||| || |||||||||| |  |||||| |||||||||||||||||||||||    
T  47799969 attaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctctctccaaattg 47799898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 7373873 - 7373985
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| |||||||| | ||||||| ||| |||||| | |||||||| |||  ||||||||||||||||||  || | |||||||||||| | || |||    
T  7373873 attaatgatagtgggatctacttaatagtaagacccactgtctattttttgtacctatctctctccaaattgcata-tcccatttattttaaccaacgaa 7373971  T
Q  101 gaggatcctaaccc 114  Q
    ||||||| ||||||    
T  7373972 gaggatcttaaccc 7373985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 44647984 - 44648076
Alignment:
Q  15 gacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    |||||||||| |||| ||| |||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| ||||||||    
T  44647984 gacccacttagtggtcggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgtcaaatggagaggatc 44648076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 7362574 - 7362676
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||| ||||| ||| ||||| ||||||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| |    
T  7362574 attaatgatggtggaacccatttagtggtacgacccaccatctattttttgtgtctatctctctccaatttgcaaaactccatttattttgtcaaatgga 7362673  T
Q  101 gag 103  Q
    |||    
T  7362674 gag 7362676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 16366524 - 16366630
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | ||||||| |||||| |||||||| |||  ||||||||  | ||||||||||||||||| |||   |  |||||||||||| ||||||| |    
T  16366524 attaatgatggtgggacacacttagtggtaggatccaccatctatttcttatgtctatctctctccaacttgcaaaactccatttattttgtcaaatgga 16366623  T
Q  101 gaggatc 107  Q
    |||||||    
T  16366624 gaggatc 16366630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 21151158 - 21151264
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| |||||||| ||   ||||||||  ||||||||||||||||||| |||   |  ||||||||||||  |||||| |    
T  21151158 attaatgatggtgggacccacttagtggtaggatcctccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatgga 21151257  T
Q  101 gaggatc 107  Q
    |||||||    
T  21151258 gaggatc 21151264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 24193610 - 24193668
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 70  Q
    ||||| ||| ||||||||| ||| |||| |||||||||||||||||||||||| |||||    
T  24193610 tgggatccatttaatggtaagactcattgtctattttatgtgtctatctctcttcaaat 24193668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 46802400 - 46802331
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 70  Q
    ||||| ||| |||||||||||||| ||||||||||||   |||||||| | |||||||||||||| ||||    
T  46802400 attaacggtggtgggacccacttagtggtaggacccaccgtctattttttatgtctatctctctctaaat 46802331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 47500341 - 47500236
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatccta 110  Q
    ||||||||||||| |||| |||||||  ||||||| || ||||||||||||||||||||||    |  || ||||||||||  ||||| |||||||| ||    
T  47500341 tgggacccacttagtggttggacccaccatctattcttttgtgtctatctctctccaaattacaaaactcaatttattttagtaaatggagaggatctta 47500242  T
Q  111 acccct 116  Q
    ||||||    
T  47500241 acccct 47500236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 5463934 - 5463867
Alignment:
Q  39 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    |||||||||||||||| ||| |||||||||||||| ||| |  ||||||| ||||||||| ||||||||    
T  5463934 tatctattttatgtgtttatatctctccaaattgtatac-tatatttattatatcaaatggagaggatc 5463867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 45260485 - 45260429
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||| ||||||| |||||||| |||  ||||||||| |||||||||||||||||||    
T  45260485 tgggatccacttagtggtaggatccacaatctattttttgtgtctatctctctccaa 45260429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8149615 - 8149686
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| | ||||||||||||||||| || |||||| ||  ||||||| || ||||||||||| |||||||    
T  8149615 attaatgatggtgggacccacttaatgatatgacccactacttattttacgtctctatctctcttcaaattg 8149686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 29631054 - 29631156
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| |||||||||| || || |||| ||||||| ||||||| || |||||||||||||   |||||||   ||| |||||||||||| |||||| |    
T  29631054 attaatgatagtgggacctacatagtggttggacccactatctatgttttgtgtctatctctt--caaattgcaaact-ccatttattttaccaaatgga 29631150  T
Q  101 gaggat 106  Q
    ||||||    
T  29631151 gaggat 29631156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 44390835 - 44390900
Alignment:
Q  52 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctct 118  Q
    |||||||||||||||||||||  | ||||||||||||||   ||||| |||||||| ||||||||||    
T  44390835 tgtctatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaacccctct 44390900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 18064588 - 18064643
Alignment:
Q  28 gtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccattt 85  Q
    ||||||| || | |||||||||||||||||||||||||| ||||||||| ||||||||    
T  18064588 gtaggactcactgtctattttatgtgtctatctctctcc-aattgtgta-ttccattt 18064643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 19901987 - 19901881
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||| |||||| |    
T  19901987 attaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgga 19901888  T
Q  101 gaggatc 107  Q
    |||||||    
T  19901887 gaggatc 19901881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 23610649 - 23610754
Alignment:
Q  2 ttaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaag 101  Q
    |||||| | |||||||||||||| ||||| ||||||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||||||||||| ||    
T  23610649 ttaatgatggtgggacccacttagtggtatgacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggag 23610748  T
Q  102 aggatc 107  Q
    ||||||    
T  23610749 aggatc 23610754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 36532641 - 36532741
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatccta 110  Q
    |||| ||||||| |||| ||||| ||| ||| ||||||||||||||||||||||| |||||||| || |||||||||||||||| ||| |||||||| ||    
T  36532641 gtggaacccactgaatgataggatccactatttattttatgtgtctatctctctctaaattgtgaac-tccatttattttatcagatggagaggatctta 36532739  T
Q  111 ac 112  Q
    ||    
T  36532740 ac 36532741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 15178699 - 15178628
Alignment:
Q  44 attttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 115  Q
    ||||||||||| ||||||||| |||||| |||||||||||| ||||||||||||| |||| |||||||||||    
T  15178699 attttatgtgtttatctctcttcaaattatgtacttccattcattttatcaaatggagagaatcctaacccc 15178628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 5416534 - 5416429
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| |    
T  5416534 attaatgatggtgggacccacttagtggtaggacccacaatctatttt-tgtgtctatctctctccaacttgcaaaactccatttattttgtcaaatgga 5416436  T
Q  101 gaggatc 107  Q
    |||||||    
T  5416435 gaggatc 5416429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 56453879 - 56453777
Alignment:
Q  11 gtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattt-tatcaaatgaagaggatcct 109  Q
    ||||||||||||||||| |||||||||  | ||||||| |||||||||||||||||||||||  | ||||||||||||| ||| ||||| |||||||| |    
T  56453879 gtgggacccacttaatgataggacccaccacctattttttgtgtctatctctctccaaattgcat-cttccatttatttctat-aaatggagaggatctt 56453782  T
Q  110 aaccc 114  Q
    |||||    
T  56453781 aaccc 56453777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 1871294 - 1871392
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaa 111  Q
    ||||||||||||| | |||||| ||| ||||||| || | |||||||||||||||||||||  ||| |||||||||||| ||||||  ||||||||||||    
T  1871294 tgggacccacttagtagtaggatccactatctatattttttgtctatctctctccaaattgcatac-tccatttattttgtcaaattgagaggatcctaa 1871392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 5815350 - 5815267
Alignment:
Q  20 acttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 106  Q
    ||||| ||||| |||||||||| ||||||  ||||||||||||||| ||||| |||||| ||||||||||||||||||| |||||||    
T  5815350 acttagtggtatgacccattatatatttt--gtgtctatctctctcaaaattttgtact-ccatttattttatcaaatggagaggat 5815267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 56558285 - 56558400
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| || |||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| |    
T  56558285 attaatgatggtgggacccacttagtgataggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatgga 56558384  T
Q  101 gaggatcctaacccct 116  Q
    ||||||| | ||||||    
T  56558385 gaggatcttcacccct 56558400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 5763231 - 5763159
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgt 73  Q
    ||||||| | |||||||||||||| ||||||||||||  ||||||||| ||| ||||||||||||||| ||||    
T  5763231 attaatgatggtgggacccacttagtggtaggacccaccatctattttttgtttctatctctctccaacttgt 5763159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 56269145 - 56269074
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| | |||||||||||||| ||||||||||||  |  |||||| |||||||||||||||||||||||    
T  56269145 attaatgatggtgggacccacttagtggtaggacccaccacttattttttgtgtctatctctctccaaattg 56269074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 3952239 - 3952133
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | ||| |||||||||| ||||||||||||  ||||||||| | ||||||||||||||||| |||   |  ||||||||||||  |||||| |    
T  3952239 attaatgatggtgagacccacttagtggtaggacccaccatctattttttttgtctatctctctccaacttgccaaactccatttattttgccaaatgga 3952140  T
Q  101 gaggatc 107  Q
    |||||||    
T  3952139 gaggatc 3952133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 34778427 - 34778533
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||||||||||||| |||||||| |||  ||||||||| ||||||||||||||| ||| |||   |  ||||||||||||  |||||| |    
T  34778427 attaatgatggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctcttcaacttgcaaaactccatttattttgccaaatgga 34778526  T
Q  101 gaggatc 107  Q
    |||||||    
T  34778527 gaggatc 34778533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 33841830 - 33841766
Alignment:
Q  44 attttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 109  Q
    ||||| |||||||||||||||||||||||| ||| |||||||| |||| |||||| ||||||||||    
T  33841830 attttttgtgtctatctctctccaaattgtatac-tccatttactttaacaaatggagaggatcct 33841766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 42844244 - 42844148
Alignment:
Q  13 gggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatccta 110  Q
    |||| ||| ||||| ||||||| || | |||||||||||||||||||| |||||||||||| ||  || ||||||||||| | ||| |||||||||||    
T  42844244 gggatccatttaatagtaggacacactctctattttatgtgtctatctatctccaaattgt-taactctatttattttataatatggagaggatccta 42844148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 47922425 - 47922324
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatccta 110  Q
    ||||||||||||| ||||||||||||  ||||||| || ||||||||| |||||||||||||   |  || |||||||||| |||||| |||||||| ||    
T  47922425 tgggacccacttagtggtaggacccaccatctattcttttgtgtctatatctctccaaattgcaaaactcaatttattttagcaaatggagaggatctta 47922326  T
Q  111 ac 112  Q
    ||    
T  47922325 ac 47922324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 18207098 - 18207003
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    ||||||||||||| ||||||||||||  ||||||||| | |||||||||||||| || |||   |  | |||||||||| ||||||| ||||||||    
T  18207098 tgggacccacttagtggtaggacccaccatctattttttttgtctatctctctctaacttgcaaaactacatttattttgtcaaatggagaggatc 18207003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 23474117 - 23474188
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| | ||||||  |||| ||| ||||||||||  |||||||||||||||||||||||| ||||||||    
T  23474117 attaatgatggtgggattcactcaatagtaggacccaccatctattttatgtgtctatctctccccaaattg 23474188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 24073634 - 24073689
Alignment:
Q  13 gggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    |||||||||||| ||||||||||||  ||||||||  |||||||||||||||||||    
T  24073634 gggacccacttagtggtaggacccaccatctatttgttgtgtctatctctctccaa 24073689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 48914587 - 48914516
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| ||| || |||||||| ||| |||||||||  |||||||||||||||| ||||||||| ||||||    
T  48914587 attaatgatagcggaacccactttatgataggacccacaatctattttatgtgtcgatctctctctaaattg 48914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 30567922 - 30567970
Alignment:
Q  16 acccacttaatggtaggacccattatctattttatgtgtctatctctct 64  Q
    ||||||||| ||||||||||||  ||||||||| |||||||||||||||    
T  30567922 acccacttagtggtaggacccaccatctattttttgtgtctatctctct 30567970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5524453 - 5524524
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| | |||||||||||||| || |||||||||  |  |||||| | |||||||||||||||||||||    
T  5524453 attaatgatggtgggacccacttactgataggacccaccacttattttttatgtctatctctctccaaattg 5524524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 13493290 - 13493387
Alignment:
Q  13 gggacccacttaatggtaggacccattatctattttatgtgtcta--tctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 109  Q
    ||||| |||||| |||| ||| ||| ||||||||||| |||||||  |||||||| ||||||  ||| |||||||||||| ||||||  ||||||||||    
T  13493290 gggactcacttagtggtgggatccactatctattttacgtgtctatctctctctctaaattgcatac-tccatttattttgtcaaatagagaggatcct 13493387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 36688257 - 36688186
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| | |||||||||||||| || |||||| ||  |  |||||| |||||||||||||||||||||||    
T  36688257 attaatgatggtgggacccacttagtgataggactcaacacttattttttgtgtctatctctctccaaattg 36688186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 39862562 - 39862629
Alignment:
Q  40 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    ||||||||| |||||||||||||||| || |||   | ||| ||||||||||||||||| ||||||||    
T  39862562 atctattttttgtgtctatctctctcaaacttgcaaaattctatttattttatcaaatggagaggatc 39862629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 50483625 - 50483554
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| || || ||| ||||||||||| ||| | | ||||||||||| |||||||||| |||||||||||    
T  50483625 attaatgataatgtgactcacttaatggtgggatcgaatatctattttacgtgtctatctgtctccaaattg 50483554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 33247199 - 33247093
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaa 100  Q
    ||||||| | |||| ||||| ||| |||||| |||||  ||||||||  ||||||||||||||||||| |||   |  ||||||||||||  |||||| |    
T  33247199 attaatgatggtggaacccatttagtggtagaacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatgga 33247100  T
Q  101 gaggatc 107  Q
    |||||||    
T  33247099 gaggatc 33247093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 5817976 - 5818013
Alignment:
Q  36 cattatctattttatgtgtctatctctctccaaattgt 73  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  5817976 cattatctcttttttgtgtctatctctctccaaattgt 5818013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 36003300 - 36003216
Alignment:
Q  16 acccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaag 101  Q
    ||||||||||||  | |||||| ||| |||||| ||| | |||||||||||||||||  ||||| ||||||||||  |||||||||    
T  36003300 acccacttaatgacatgacccaatatttattttttgtatttatctctctccaaattgcatactt-catttattttgacaaatgaag 36003216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 12312534 - 12312438
Alignment:
Q  12 tgggacccacttaatggtaggacccattatcta-ttttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    ||||||||||||| |||||||| |||  ||||| |||| | ||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  12312534 tgggacccacttagtggtaggatccaccatctatttttttttgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatc 12312438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33262621 - 33262557
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 65  Q
    ||||||| | |||||||| | ||| |||||||| |||  ||||||||| ||||||||||||||||    
T  33262621 attaatgatggtgggacctatttagtggtaggatccaccatctattttttgtgtctatctctctc 33262557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 58701 - 58774
Alignment:
Q  16 acccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 90  Q
    |||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||  || |||||||||||||    
T  58701 acccacttaatggtaggatccactatctattttatatgtttatctctctccaaattgcata-ttccatttatttt 58774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 70797 - 70885
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 90  Q
    ||||||| | |||| ||||| ||||||||||||   | |||||||||||| ||| ||||||| |||||||||  || |||||||||||||    
T  70797 attaatgatggtggaacccatttaatggtaggataaactatctattttatatgtttatctctttccaaattgcata-ttccatttatttt 70885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 7153 - 7220
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| | |||| ||||||||||| ||||||||||  ||||||||| |||||||||||||||||||    
T  7153 attaatgatggtggaacccacttaatagtaggacccaccatctattttttgtgtctatctctctccaa 7220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 29638 - 29567
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 72  Q
    ||||||| ||||||||| ||| ||||| ||||||| |||| ||||||||||| |||||||||||| ||||||    
T  29638 attaatgatagtgggactcacgtaatgctaggacctattacctattttatgtctctatctctctctaaattg 29567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 208080 - 208175
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 107  Q
    ||||||||||||| ||||||||||||  ||||||||| ||||| ||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  208080 tgggacccacttagtggtaggacccaccatctattttttgtgtttatctctctccaacttgcaaaactccatttattttgccaaatggagaggatc 208175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 16455 - 16399
Alignment:
Q  12 tgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||||||||| ||||||||||||  || |||||| |||||||||||||||||||    
T  16455 tgggacccacttagtggtaggacccaccatttattttttgtgtctatctctctccaa 16399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9270 - 9203
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 68  Q
    ||||||| | |||| | ||||||| |||| |||||||  ||||||||| |||||||||||||||||||    
T  9270 attaatgatggtggaatccacttagtggttggacccaccatctattttctgtgtctatctctctccaa 9203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 17375 - 17311
Alignment:
Q  1 attaatggtagtgggacccacttaatggtaggacccattatctattttatgtgtctatctctctc 65  Q
    ||||||| | |||||||||||||| || |||||||||  |  |||||| ||||||||||||||||    
T  17375 attaatgatggtgggacccacttagtgataggacccagcacttattttttgtgtctatctctctc 17311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University