View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19322_low_11 (Length: 234)

Name: NF19322_low_11
Description: NF19322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19322_low_11
NF19322_low_11
[»] chr7 (3 HSPs)
chr7 (20-204)||(44871932-44872116)
chr7 (19-117)||(44872132-44872230)
chr7 (66-179)||(44871846-44871956)
[»] chr3 (10 HSPs)
chr3 (25-198)||(47527646-47527816)
chr3 (19-179)||(47527797-47527954)
chr3 (61-192)||(47527583-47527714)
chr3 (19-204)||(47527502-47527690)
chr3 (122-204)||(47522241-47522323)
chr3 (98-204)||(47522307-47522413)
chr3 (23-183)||(47527925-47528082)
chr3 (37-116)||(47527389-47527468)
chr3 (131-198)||(47527844-47527911)
chr3 (94-169)||(47549704-47549782)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 44871932 - 44872116
Alignment:
Q  20 ctctttcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44871932 ctctttcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgct 44872031  T
Q  120 gttgttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgctgtttcct 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44872032 gttgttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgctgtttcct 44872116  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 44872132 - 44872230
Alignment:
Q  19 gctctttcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattg 117  Q
    |||| ||||||||||||| |||||||| ||||||||| ||||||||||||| ||||| |||| || |   |||||||||||||| ||| ||| ||||||    
T  44872132 gctccttcgactgtaatgcagacaaagtaaatgctcttgctactgcttccttggattttctctgtcgttttttcaactgtaatgcagaggaaaaaattg 44872230  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 44871846 - 44871956
Alignment:
Q  66 tcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgttgttgttgctgcttcctcggattttctcagttgctctttcgact 165  Q
    ||||| |||||||| |||||| ||||||| |||||| |||||||| |||||| || || ||   || |||||| ||||| | |||||  |||||||||||    
T  44871846 tcctcagattctctgggttgctctttcaaatgtaattgagaagaataaattgatgctgctg---cttcttccttggattctttcagtctctctttcgact 44871942  T
Q  166 gtaaaggaggcaaa 179  Q
    |||| |||| ||||    
T  44871943 gtaatggagacaaa 44871956  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 47527816 - 47527646
Alignment:
Q  25 tcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgttgt 124  Q
    ||||||| |||||||||||||||||| |||| ||||||| | ||||||||||  ||||||||||||||| |||||||||||| ||| | ||   || | |    
T  47527816 tcgactgaaatggagacaaagaaaatcctcttgctactgatacctcggattccttcggttgcactttcagctgtaatggagatgaatatat---tgatat 47527720  T
Q  125 tgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgctg 198  Q
    || |||||||||||| |||| ||||||| |||||||||||||||| |||| |||| |||||| ||||| |||||    
T  47527719 tgctgctgcttcctcagattctctcagtcgctctttcgactgtaatggagacaaagaaattgttgttgttgctg 47527646  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 47527954 - 47527797
Alignment:
Q  19 gctctttcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgc 118  Q
    |||||||||||||||||||||||||  ||||||||||  ||| ||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||       
T  47527954 gctctttcgactgtaatggagacaagtaaaatgctcttactaatgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaat--- 47527858  T
Q  119 tgttgttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaa 179  Q
    |||||||| ||||||||| || |||  ||||||| ||||  ||||||| || |||| ||||    
T  47527857 tgttgttgctgctgcttcatcagatgctctcagtcgctcaatcgactgaaatggagacaaa 47527797  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 47527714 - 47527583
Alignment:
Q  61 ctgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgttgttgttgctgcttcctcggattttctcagttgctcttt 160  Q
    |||||||||| ||||||||| || || ||||| |||||||||||||  ||||||||| |||||||| |||||||||| |||||| |||||||||||| ||    
T  47527714 ctgcttcctcagattctctcagtcgctctttcgactgtaatggagacaaagaaattgttgttgttgctgctgcttccacggattctctcagttgctcatt 47527615  T
Q  161 cgactgtaaaggaggcaaataaattgatgttg 192  Q
    ||||||||| |||| | |||| ||||||||||    
T  47527614 cgactgtaatggagaccaatatattgatgttg 47527583  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 47527690 - 47527502
Alignment:
Q  19 gctctttcgactgtaatggagacaaagaaaatgctctag---ctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaat 115  Q
    |||||||||||||||||||||||||||||| || | | |   || |||||||| ||||||||||| ||||| | ||| |||||||||||||  || | ||    
T  47527690 gctctttcgactgtaatggagacaaagaaattgttgttgttgctgctgcttccacggattctctcagttgctcattcgactgtaatggagaccaatatat 47527591  T
Q  116 tgctgttgttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgctgtttcct 204  Q
    || |||||||||  || |||||||||||| |||| |||||||||  ||  |||||   | | |||||||||||||||||||||||||||    
T  47527590 tgatgttgttgtcacttcttcctcggattctctcggttgctcttcagaaagtaaacaggacgaataaattgatgttgctgctgtttcct 47527502  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 47522323 - 47522241
Alignment:
Q  122 tgttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgctgtttcct 204  Q
    ||||| ||||||||||| ||||| |||| || |||||||||| |||||||||| | ||||||||||| |||||||||||||||    
T  47522323 tgttgctgctgcttcctgggattctctcggtagctctttcgattgtaaaggagacgaataaattgatattgctgctgtttcct 47522241  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 47522413 - 47522307
Alignment:
Q  98 taatggagaagaagaaattgctgttgttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgct 197  Q
    |||||||||  |||||||||  |||| || |||| | |||||||||| |||||||| |||||||||| | || |||| | |||| |||||||||||||||    
T  47522413 taatggagacaaagaaattgtagttgctgctgcttcctcctcggattctctcagtttctctttcgacggcaatggagaccaatagattgatgttgctgct 47522314  T
Q  198 gtttcct 204  Q
    | |||||    
T  47522313 gcttcct 47522307  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 47528082 - 47527925
Alignment:
Q  23 tttcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgtt 122  Q
    ||||| |||||||||||||| ||||| || | | | | ||||||| || |||||||||  |||| |||| | |||||||||| | ||| ||||   |  |    
T  47528082 tttcggctgtaatggagacagagaaattgtttttgatgctgcttcatcagattctctccattgctcttttatctgtaatggaaacgaataaat---taat 47527986  T
Q  123 gttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaa 183  Q
    |||| ||||||||||||| ||| || |||| |||||||||||||||| |||| ||| ||||    
T  47527985 gttgctgctgcttcctcgcattctcgcagtcgctctttcgactgtaatggagacaagtaaa 47527925  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 47527468 - 47527389
Alignment:
Q  37 gagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaatt 116  Q
    |||| |||||||||||||||||| | ||||||||||||||||| ||  ||  |||| ||||| |||||||  ||||||||    
T  47527468 gagaaaaagaaaatgctctagctccagcttcctcggattctctaggacgctttttcgactgtgatggagacaaagaaatt 47527389  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 47527911 - 47527844
Alignment:
Q  131 tgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgctg 198  Q
    ||||||||| |||| |||| ||||||||||| ||||||| |||| | || |||||| |||||||||||    
T  47527911 tgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctg 47527844  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 47549782 - 47549704
Alignment:
Q  94 actgtaatggagaagaagaaattgctgttg---ttgttgctgcttcctcggattttctcagttgctctttcgactgtaa 169  Q
    ||||||||||||| |||||||||| |||||   |||||| | |||||||||||| |||| || ||| ||| ||||||||    
T  47549782 actgtaatggagatgaagaaattgttgttgttattgttgttccttcctcggattctctctgtcgcttttttgactgtaa 47549704  T

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