View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19322_low_3 (Length: 421)
Name: NF19322_low_3
Description: NF19322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19322_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 12 - 405
Target Start/End: Complemental strand, 38462853 - 38462460
Alignment:
| Q |
12 |
atgaagataaaaatctaaaaatatataattatcacatacagtttatacagagaacaaagctatacagcaaaaacaatctatttgttaagctatgtcaagc |
111 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38462853 |
atgaagataaaaatctagaaatatataattatcacatacagtttatacagagaacaaagctatacagcaaaaacaatctatttgttaagctatgtcaagc |
38462754 |
T |
|
| Q |
112 |
tttataaacatagtgattattagtacacaaaacagtcaaataatagaataaacatgttatatgaccaaaataaaacgaaatttattgataaaacataaca |
211 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38462753 |
tttataaacatagtgattattagcacacaaaacagtcaaataatagaataaacatgttatatgaccaaaataaaacgaaatatattgataaaacataaca |
38462654 |
T |
|
| Q |
212 |
aattgtggcaattaaacacagccctgcattactaaaggagaccatagaattctagctcattacgtattcatcattccaaactctaagtttgatttaatac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38462653 |
aattgtggcaattaaacacagccctgcattactaaaggagaccatagaattctagctcattacgtattcatcattccaaactctaagtttgatttaatac |
38462554 |
T |
|
| Q |
312 |
cataaccatgattttatcccacacgtagcatattactactcttactacataacttttaacttaaagccaccataataaaaagataggacagaaa |
405 |
Q |
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| T |
38462553 |
cataaccatgattttatcccacacgtagcatattactactcttactacataacttttaacttaaagccaccataataaaaagataggacagaaa |
38462460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 52091122 - 52091514
Alignment:
| Q |
13 |
tgaagataaaaatctaaaaatatataattatcacatacagtttatacagagaacaaagctatacagcaaaaacaatctatttgttaagctatgtcaagct |
112 |
Q |
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|||||||||| ||||| ||||||| ||||||| ||| | ||| |||| ||||||||| ||||||||||||||| || ||||| ||||||| |||||| |
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| T |
52091122 |
tgaagataaacatctagaaatataaaattatcgcatgtaatttgtacaaagaacaaagttatacagcaaaaacattcgatttgaaaagctattgcaagct |
52091221 |
T |
|
| Q |
113 |
ttataaacatagtgattattagtacacaaaacagtcaaataatagaataaa-----catgttatatgaccaaaataaaacgaaatttattgataaaacat |
207 |
Q |
| |
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|||||||||||||||||| | | | | |||| | ||| ||||||||||| ||||||||||||| |||| |||| ||||| | ||||||||| | |
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| T |
52091222 |
ttataaacatagtgatta---gcatagagaacaataaaacaatagaataaaggaaacatgttatatgactaaaacaaaaagaaatatgttgataaaatac |
52091318 |
T |
|
| Q |
208 |
aacaaattgtggcaattaaacacagccctgcattactaaaggagaccatagaattctagctcattacgta----ttcatcattccaaactctaagtttga |
303 |
Q |
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||||||||||| |||| | ||||| | ||||||||||| |||||| |||| ||||| | |||||||| || |||| ||||||||| ||||||| |
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| T |
52091319 |
aacaaattgtgtcaatgacacacaacactgcattactagaggagagcatacaattccaactcattacctacctattcaccattccaaa-----agtttga |
52091413 |
T |
|
| Q |
304 |
tttaataccataaccatgattttatcccacacgtagcatattactactcttactacataacttttaacttaaagccaccataataaaaagataggacaga |
403 |
Q |
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||||||||||||| |||||||||||||| ||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
52091414 |
tttaataccataatcatgattttatcccgcacatagcatattactactcttaataaataac-tttaacttaaagccaccataatatgaagataggacaga |
52091512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 93 - 405
Target Start/End: Complemental strand, 48754467 - 48754164
Alignment:
| Q |
93 |
ttgttaagctatgtcaagctttataaacatagtgattattagtacacaaaacagtcaaataatagaataaacatgttatatgaccaaaataaaacgaaat |
192 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| | | | | |||| | ||| ||||||||||| | | ||||| | ||||||| ||||| |
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| T |
48754467 |
ttgttaagctatggcaagctttataaacatagtgatta---gcatagagaacaataaaacaatagaataaag--gaaacatgactagaataaaaagaaat |
48754373 |
T |
|
| Q |
193 |
ttattgataaaacataacaaattgtggcaattaaacacagccctgcattactaaaggagaccatagaattctagctcattacgtattcatcattccaaac |
292 |
Q |
| |
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| ||||||||||| |||||||||||||||| | || | | ||||||| |||||||||| |||| ||||| | |||||||| |||||| ||||||||| |
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| T |
48754372 |
atgttgataaaacacaacaaattgtggcaatgacacgcgacactgcattgctaaaggagagcatacaattccaactcattacctattcaccattccaaa- |
48754274 |
T |
|
| Q |
293 |
tctaagtttgatttaataccataaccatgattttatcccacacgtagcatattac--tactcttactacataacttttaacttaaagccaccataataaa |
390 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||| || ||||| ||||||||||||||||||||||| |
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| T |
48754273 |
----agtttgatttaataccatagtcctgattttatcccacacatagcatattacaacactcttaataaataac-tttaacttaaagccaccataatatg |
48754179 |
T |
|
| Q |
391 |
aagataggacagaaa |
405 |
Q |
| |
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||||||||||||||| |
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| T |
48754178 |
aagataggacagaaa |
48754164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 40733238 - 40733353
Alignment:
| Q |
65 |
acaaagctatacagcaaaaacaat--ctatttgttaagctatgtcaagctttataaacatagtgattattagtacacaaaacagtcaaataatagaataa |
162 |
Q |
| |
|
||||||| |||||||| ||| ||| ||||||||||||| ||| |||||| ||||| ||||||||||| | ||||||| ||||||||| |||||| || |
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| T |
40733238 |
acaaagccatacagcataaaaaatatctatttgttaagccatgccaagctgtataagcatagtgatta---gcacacaaaccagtcaaatgatagaaaaa |
40733334 |
T |
|
| Q |
163 |
acatgttatatgaccaaaa |
181 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
40733335 |
acatgttatatgaccaaaa |
40733353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 48753215 - 48753183
Alignment:
| Q |
138 |
acaaaacagtcaaataatagaataaacatgtta |
170 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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|
| T |
48753215 |
acaaaccagtcaaataatagaataaacatgtta |
48753183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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