View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19322_low_7 (Length: 316)

Name: NF19322_low_7
Description: NF19322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19322_low_7
NF19322_low_7
[»] chr4 (2 HSPs)
chr4 (27-302)||(30371584-30371859)
chr4 (27-102)||(18187812-18187887)
[»] chr7 (3 HSPs)
chr7 (27-102)||(12334458-12334533)
chr7 (27-102)||(6950202-6950277)
chr7 (27-102)||(12338645-12338720)
[»] chr5 (1 HSPs)
chr5 (27-102)||(39506351-39506426)
[»] chr3 (1 HSPs)
chr3 (27-102)||(13241042-13241117)
[»] chr1 (1 HSPs)
chr1 (27-102)||(42800521-42800596)
[»] scaffold1829 (1 HSPs)
scaffold1829 (59-102)||(864-907)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 27 - 302
Target Start/End: Complemental strand, 30371859 - 30371584
Alignment:
Q  27 agagccattgttacccattgtcagttgttattgttaagacgtattttcaaaatacctatatctaaagctgtggcaagcttttttcttttattctcgtcac 126  Q
    |||||||  ||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30371859 agagccaacgttacccattgtcggttgttattgttaaggcgtattatcaaaatacctatatctaaagctgaggcaagcttttttcttttattctcgtcac 30371760  T
Q  127 aaatatttatggatattcatggtttttattaattactggtgtgcagacgacgcatgacgcgt-cctgttggtttttatagtgcttaatttgtgaatagta 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  30371759 aaatatttatggatattcatggtttttattaattactggtgtgcagacgacgcatgacgcgtccctgttggtttttatagtgcttaatttgtgagtagta 30371660  T
Q  226 atttgatgnnnnnnnnnactgtactactgattaattatttttgaacttagttcaaactaaaaataatgaaaaggatg 302  Q
    ||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30371659 atttgatg-ttttttttactgtactactgattaattatttttgaacttagttcaaactaaaaataataaaaaggatg 30371584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 18187812 - 18187887
Alignment:
Q  27 agagccattgttacccattgtcagttgttattgttaagacgtattttcaaaatacctatatctaaagctgtggcaa 102  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18187812 agagccatcgttacccattgtcggttgttattgttaaggcgtattttcaaaatacctatatctaaagctgtggcaa 18187887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 12334458 - 12334533
Alignment:
Q  27 agagccattgttacccattgtcagttgttattgttaagacgtattttcaaaatacctatatctaaagctgtggcaa 102  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12334458 agagccatcgttacccattgtcggttgttattgttaaggcgtattttcaaaatacctatatctaaagctgtggcaa 12334533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 6950277 - 6950202
Alignment:
Q  27 agagccattgttacccattgtcagttgttattgttaagacgtattttcaaaatacctatatctaaagctgtggcaa 102  Q
    |||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6950277 agagccatcgttacccattgttggttgttattgttaaggcgtattttcaaaatacctatatctaaagctgtggcaa 6950202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 12338645 - 12338720
Alignment:
Q  27 agagccattgttacccattgtcagttgttattgttaagacgtattttcaaaatacctatatctaaagctgtggcaa 102  Q
    ||||||||  ||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  12338645 agagccatcattacccattctcggttgttattgttaaggcgtattttcaaaatacctatatctaaagttgtggcaa 12338720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 39506426 - 39506351
Alignment:
Q  27 agagccattgttacccattgtcagttgttattgttaagacgtattttcaaaatacctatatctaaagctgtggcaa 102  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39506426 agagccatcgttacccattgtcggttgttattgttaaggcgtattttcaaaatacctatatctaaagctgtggcaa 39506351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 13241117 - 13241042
Alignment:
Q  27 agagccattgttacccattgtcagttgttattgttaagacgtattttcaaaatacctatatctaaagctgtggcaa 102  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13241117 agagccatcgttacccattgtcggttgttattgttaaggcgtattttcaaaatacctatatctaaagctgtggcaa 13241042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 42800596 - 42800521
Alignment:
Q  27 agagccattgttacccattgtcagttgttattgttaagacgtattttcaaaatacctatatctaaagctgtggcaa 102  Q
    |||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||| ||||||||    
T  42800596 agagccatcgttacccattgtcggttgttattgttaaggcgtattttcaaaataccaatatctaaagttgtggcaa 42800521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1829 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1829
Description:

Target: scaffold1829; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 907 - 864
Alignment:
Q  59 gttaagacgtattttcaaaatacctatatctaaagctgtggcaa 102  Q
    |||||| |||||| |||||||||||||||||| |||||||||||    
T  907 gttaaggcgtattctcaaaatacctatatctacagctgtggcaa 864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University