View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19322_low_9 (Length: 297)
Name: NF19322_low_9
Description: NF19322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19322_low_9 |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 50 - 279
Target Start/End: Complemental strand, 18914338 - 18914109
Alignment:
| Q |
50 |
ttttactattacctgactgggccagtcctgccggcattgatttgagtgttgttcccattcccataagtcgcttgctcgaaagtccgttactcatggatca |
149 |
Q |
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| T |
18914338 |
ttttactattacctgactgggccagtcctgccggcattgatttgagtgttgttcccattcctataagttacttgctcgaaagtccgttactcatggatca |
18914239 |
T |
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| Q |
150 |
ctacatacctcactacttacgattgagggaattcgccattcacaatgatccttattactttttgagtaatgtggattgttatcaaatagttggttcctgc |
249 |
Q |
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| T |
18914238 |
ctacgtacctcactacttacgattgagggaattcgccattcacaatgatccttattaccttttgagtaatatggattgttatcaaatagttggttcctgc |
18914139 |
T |
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| Q |
250 |
aatggattgatttgtttgcgtggaaccgct |
279 |
Q |
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| T |
18914138 |
aatggattgatttgtttgcgtggaaccgct |
18914109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 18921381 - 18921305
Alignment:
| Q |
197 |
atccttattactttttgagtaatgtggattgttatcaaatagttggttcctgcaatggattgatttgtttgcgtgga |
273 |
Q |
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| T |
18921381 |
atccttattaccttttgagtaatatggattgcgatcatgtcattggttcctgcaatggattgatttgtttgcgtgga |
18921305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 18921484 - 18921399
Alignment:
| Q |
52 |
ttactattacctgactgggccagtcctgccggcattgatttgagtgttgttcccattcccataagtcgcttgctcgaaagtccgtt |
137 |
Q |
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| T |
18921484 |
ttactattaccagactgcgccaatcctgacgagatggatttgagtgctgtaccaattcctgtaagtcatttgctcgaaagtccgtt |
18921399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 7452 - 7535
Alignment:
| Q |
185 |
ccattcacaatgatccttattactttttgagtaatgtggattgttatcaaatagttggttcctgcaatggattgatttgtttgc |
268 |
Q |
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| T |
7452 |
ccattctcaattatccttattaccgattgagtaatatggattgctgtaatatcgttggttcctgtaatggattgatatgtttgc |
7535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 29454753 - 29454721
Alignment:
| Q |
235 |
atagttggttcctgcaatggattgatttgtttg |
267 |
Q |
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| T |
29454753 |
atagttggttcctgcaatggattgatctgtttg |
29454721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 3625188 - 3625220
Alignment:
| Q |
235 |
atagttggttcctgcaatggattgatttgtttg |
267 |
Q |
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| T |
3625188 |
atagttggttcctgcaatggattgatatgtttg |
3625220 |
T |
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