View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19323_low_3 (Length: 318)
Name: NF19323_low_3
Description: NF19323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19323_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 738994 - 739307
Alignment:
| Q |
1 |
tttaccgcaatttaaaacagatatatttggagtgaggggaacttactgatagtgtcgccgatttggaagttcttagtagcagcccatttcttgtaatcta |
100 |
Q |
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| T |
738994 |
tttaccgcaatttaaaacagatat--ttggagtgaggggaacttaccgatagtgtcgccgatttggaagttcttagtagcagcccatttcttgtaatcta |
739091 |
T |
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| Q |
101 |
tactaccaatgattgtccagccagaagagtctccaaccttgtgaacagctgcatttgaaaccttgatagctaccatcataaccatcaagaaaactacaga |
200 |
Q |
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| T |
739092 |
tactaccaatgattgtccagccagaagagtctccaaccttgtgaacagctgcatttgaaaccttgatagctaccatcataaccatcaagaaaactacaga |
739191 |
T |
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| Q |
201 |
tctctctacaaatcccatgactctctctctcagcaaggaaattagcaaaacttcctcttgaggtgtgtactaatgagactcttcttttcactcttgaata |
300 |
Q |
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| T |
739192 |
tctctctacaaatcccatga--ctctctctcagcaaggaaattagcaaaacttcctcttgaggtgtgtactaatgagactcttcttttcactcttgaata |
739289 |
T |
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| Q |
301 |
tttatttatatatccttt |
318 |
Q |
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| T |
739290 |
tttatttatatatccttt |
739307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 47218922 - 47218784
Alignment:
| Q |
41 |
acttactgatagtgtcgccgatttggaagttcttagtagcagcccatttcttgtaatctatactaccaatgattgtccagccagaagagtctccaacctt |
140 |
Q |
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| T |
47218922 |
acttactaatagtgtcaccaagttggaagttcttggtagcagcccattttttgtagtcaatgttaccaagtgtagtccagccagcagaatcaccaacctt |
47218823 |
T |
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| Q |
141 |
gtgaacagctgcatttgaaaccttgatagctaccatcat |
179 |
Q |
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| T |
47218822 |
gtatacagctgcatatgaaatctgcatagctaccatcat |
47218784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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