View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19324_high_1 (Length: 496)
Name: NF19324_high_1
Description: NF19324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19324_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 12 - 480
Target Start/End: Complemental strand, 49546413 - 49545958
Alignment:
| Q |
12 |
ttctagttccaaaagggaagaaggaagttttggcagaagtgttaaaaacaaccatttattttcatattattgttcatcttctttttacttcagaggcagg |
111 |
Q |
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| T |
49546413 |
ttctagctccaaaagggaagaaggaagttttggcagaagtgttaaaaa-aaccatttattttcatattattgttcatcttctttttacttcagaggcagg |
49546315 |
T |
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| Q |
112 |
aaggagatgttatgtgggaattgcaatggagctggatttattggtggcttcttgagcacatatgatcagtaaggagggacagatccaacgatagcgaaca |
211 |
Q |
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| T |
49546314 |
aaggagatgttatgtgggaattgcaatggagctggatttattggtggcttcttgagcacatatgatcagtaaggagggacagatccaacgatagcgaaca |
49546215 |
T |
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| Q |
212 |
agttcagtacatacatgcatatatattaattgttttggttcaaatacttttcactctttaaactttgtgtttagttatctcagttcacttgtagccatag |
311 |
Q |
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| T |
49546214 |
agttcag------------tatatattaattgttttggttcaaatacttttcactctttaaactttgtgtttagttatctcagttcacttgtagccatag |
49546127 |
T |
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| Q |
312 |
tggttgctnnnnnnnnngatgcaggacactatcatatgatgctcaaggaaacatagatgctctaatgtatatcaaatattaatccattattacatacttc |
411 |
Q |
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| T |
49546126 |
tggttgctaaaaaaaaagatgcaggacactatcatatgatgctcaaggaaacatagatgctctaatgtatatcaaatattaatccattattacatacttc |
49546027 |
T |
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| Q |
412 |
attgaatggcaaaacagccttgatttctttctatacactacttatttagttattcatctagaacagtat |
480 |
Q |
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| T |
49546026 |
attgaatggcaaaacagtcttgatttctttctatacactacttatttagttattcatctagaacagtat |
49545958 |
T |
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