View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19324_high_5 (Length: 222)
Name: NF19324_high_5
Description: NF19324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19324_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 56229605 - 56229802
Alignment:
| Q |
12 |
gaagaaaattaatgtgttgtttttcctttcaattttgcgtttgatattgcagagcatccaaacgttgtgtcagtgttgttgaaccgaggaagaaagttac |
111 |
Q |
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| T |
56229605 |
gaagaatatcaatgtgttgtttttcctttcaattatgcgtttgatattgcagagcatccaaacgttgtgtcagtgttgttgaaccgaggaagaaagttac |
56229704 |
T |
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| Q |
112 |
acactacacactcatgggaatttatgtcactggaacacaatggtgtggctccttctcattccctccttacaaaagctagatacggtgaagatgttatt |
209 |
Q |
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| T |
56229705 |
acactacacactcatgggaatttatgtcactggaacacaatggtgtggctccttctcattccctccttacaaaagctagatacggtgaagatgttatt |
56229802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 39186995 - 39187184
Alignment:
| Q |
20 |
ttaatgtgttgtttttcctttcaattttgcgtttgatattgcagagcatccaaacgttgtgtcagtgttgttgaaccgaggaagaaagttacacactaca |
119 |
Q |
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| T |
39186995 |
ttaatgttttgttttttctttccatcttgtgttttatattgtagagcatccaaacgttgtgtcagtgttgttaaaccgaggaagaaagttacacactaca |
39187094 |
T |
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| Q |
120 |
cactcatgggaatttatgtcactggaacacaatggtgtggctccttctcattccctccttacaaaagctagatacggtgaagatgttatt |
209 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| |
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| T |
39187095 |
cactcatgggaattcatgtcaatggaacacaatggtgtggctccttctcattccctctttagaaaagcaagatacggtgaagatgttatt |
39187184 |
T |
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