View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19324_low_1 (Length: 535)
Name: NF19324_low_1
Description: NF19324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19324_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 1663670 - 1663552
Alignment:
| Q |
184 |
ccatagtccatgctctactaagatgcctttgtaattgttcatctaaactcttcagatctatttgatctgctctcacatatccaccactctcactcttctt |
283 |
Q |
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| T |
1663670 |
ccatagtccatgctctactaagatgcctttgtaattgttcatctaaactcttcagatctatttgatctgctctcacatatccaccactctcactcttctt |
1663571 |
T |
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| Q |
284 |
catttcttcaactcaacac |
302 |
Q |
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| T |
1663570 |
catttcttcaactcaacac |
1663552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 1663844 - 1663724
Alignment:
| Q |
10 |
catcatcaacaccacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctcccattcttgtctatttct |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1663844 |
catcataaacaccacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctcccattcttgtctatttct |
1663745 |
T |
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| Q |
110 |
tgtattactattagaagaaga |
130 |
Q |
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| T |
1663744 |
tgtattactattagaagaaga |
1663724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 188 - 302
Target Start/End: Original strand, 31046676 - 31046792
Alignment:
| Q |
188 |
agtccatgctctact--aagatgcctttgtaattgttcatctaaactcttcagatctatttgatctgctctcacatatccaccactctcactcttcttca |
285 |
Q |
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| T |
31046676 |
agtccatgctctactgtaagatgcctttgtaattgttcgtctaaactcttcagatctatttgatctgctctcacatatccaccactctcactcttcttca |
31046775 |
T |
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| Q |
286 |
tttcttcaactcaacac |
302 |
Q |
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|||||| |||||||||| |
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| T |
31046776 |
tttctttaactcaacac |
31046792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 362 - 409
Target Start/End: Complemental strand, 1663492 - 1663445
Alignment:
| Q |
362 |
gatactaaaactactttgaagcattaaaagtttcaaactttggatcca |
409 |
Q |
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| T |
1663492 |
gatactaaaactactttgaagcattaaaagtttcaaactttggatcca |
1663445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 477 - 519
Target Start/End: Complemental strand, 1663377 - 1663335
Alignment:
| Q |
477 |
ctatttactatgtggtgaagacataaatataatgtaacaaaaa |
519 |
Q |
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| T |
1663377 |
ctatttactatgtggtgaagacataaatataatgtaacaaaaa |
1663335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 406
Target Start/End: Original strand, 31046853 - 31046893
Alignment:
| Q |
366 |
ctaaaactactttgaagcattaaaagtttcaaactttggat |
406 |
Q |
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| T |
31046853 |
ctaaaactactttgaagcgttaaaagtttcaaactttggat |
31046893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 43970907 - 43970824
Alignment:
| Q |
11 |
atcatcaacaccacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctccca |
94 |
Q |
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| T |
43970907 |
atcataaacaccacgatgaacagtgccaaaagtgccacgagcaataacacttttgatgatgagtttagaaggatcaatttccca |
43970824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 35189534 - 35189455
Alignment:
| Q |
20 |
accacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctcccattctt |
99 |
Q |
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|||||| ||||||||||| ||||| |||||||| | |||| | ||||| || || |||||||||||||| ||||| |||| |
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| T |
35189534 |
accacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaatttcccactctt |
35189455 |
T |
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