View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19324_low_4 (Length: 413)

Name: NF19324_low_4
Description: NF19324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19324_low_4
NF19324_low_4
[»] chr4 (23 HSPs)
chr4 (3-398)||(35968686-35969081)
chr4 (43-372)||(18364601-18364930)
chr4 (43-372)||(36597995-36598324)
chr4 (36-372)||(36909951-36910287)
chr4 (46-382)||(36636305-36636641)
chr4 (34-212)||(20211227-20211405)
chr4 (175-372)||(36643123-36643320)
chr4 (175-372)||(36665400-36665597)
chr4 (36-212)||(28125361-28125536)
chr4 (31-287)||(36612716-36612972)
chr4 (23-131)||(36627550-36627658)
chr4 (36-212)||(29677038-29677215)
chr4 (183-318)||(36629772-36629907)
chr4 (43-208)||(38862637-38862804)
chr4 (38-131)||(36642953-36643046)
chr4 (187-368)||(55966550-55966731)
chr4 (36-87)||(55966197-55966248)
chr4 (328-373)||(36613013-36613058)
chr4 (284-373)||(38862855-38862944)
chr4 (48-90)||(36665240-36665282)
chr4 (46-129)||(36629952-36630035)
chr4 (43-130)||(18360665-18360756)
chr4 (43-130)||(36602173-36602264)
[»] chr1 (1 HSPs)
chr1 (37-365)||(42602238-42602564)
[»] chr6 (4 HSPs)
chr6 (36-366)||(33839645-33839975)
chr6 (36-317)||(10812471-10812752)
chr6 (36-371)||(10811887-10812223)
chr6 (30-101)||(33843559-33843630)
[»] chr8 (1 HSPs)
chr8 (38-91)||(35336427-35336480)
[»] chr3 (2 HSPs)
chr3 (243-367)||(25597311-25597435)
chr3 (243-372)||(25602102-25602231)
[»] chr2 (1 HSPs)
chr2 (327-370)||(43863722-43863765)


Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 3 - 398
Target Start/End: Complemental strand, 35969081 - 35968686
Alignment:
Q  3 cataggagactcctcaaaatttgaatgcatttttgcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35969081 cataggagactcctcaaaatttgaatgcatttttgcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccg 35968982  T
Q  103 gtaatagtaaaggtgcaaagactaggagtggacaactcaatttgggaaaaattagatgaattatgatgcatggctaaatcgacaagtgtctcacttgata 202  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35968981 gtaatagtaaaggtgcaaagactaggagtagacaactcaatttgggaaaaattagatgaattatgatgcatagctaaatcgacaagtgtctcacttgata 35968882  T
Q  203 tcttgaggatttgagcatcctctatcttacaaccgtaaaggaccaaactattcaacttagtaaaggcggaaaaggggtcaacacagccgtttttatcacc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35968881 tcttgaggatttgagcatcctctatcttacaaccgtaaaggaccaaactattcaacttagtaaaggcggaaaaggggtcaacacagccgtttttatcacc 35968782  T
Q  303 ccaaaaggcgaaatttgttagatccaagctggtcaatgctggcaaattcaaatattttggaaatattgttccaaaattaccaccaatattgcgtct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35968781 ccaaaaggcgaaatttgttagatccaagctggtcaatgctggcaaattcaaatattttggaaatattgttccaaaattaccaccaatattgcgtct 35968686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 43 - 372
Target Start/End: Complemental strand, 18364930 - 18364601
Alignment:
Q  43 atatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactaggagtggacaactcaa 142  Q
    ||||||| || |||||||||| |||||| |||||||||||||||||||  | | ||||||| || ||||||||| ||||||||||||   || ||||| |    
T  18364930 atatttatttttttaacagaaaaaagactgctcccacatattttctgaacaagcataccggaaaaagtaaaggtacaaagactaggaacagataactcga 18364831  T
Q  143 tttgggaaaaattagatgaattatgatgcatggctaaatcgacaagtgtctcacttgatatcttgaggatttgagcatcctctatcttacaaccgtaaag 242  Q
    ||| || ||   | || |||  || |||||| || |||| |||||||||||||||||||||  |||| ||||||||||| | || |||||||||  |||     
T  18364830 ttttggcaattcttgaagaacaataatgcatcgcaaaattgacaagtgtctcacttgatatgctgagaatttgagcatcttttaccttacaaccagaaat 18364731  T
Q  243 gaccaaactattcaacttagtaaaggcggaaaaggggtcaacacagccgtttttatcaccccaaaaggcgaaatttgttagatccaagctggtcaatgct 342  Q
     ||||||||||||||||| | ||||||||||||||| ||| |||| ||||||| | |||| |||||||  |||| || |||||| ||| ||||||||       
T  18364730 aaccaaactattcaacttgggaaaggcggaaaagggctcagcacaaccgttttcaccaccgcaaaaggaaaaatgtgatagatctaagttggtcaataaa 18364631  T
Q  343 ggcaaattcaaatattttggaaatattgtt 372  Q
    |||||||||||| |||||||||||| ||||    
T  18364630 ggcaaattcaaagattttggaaataatgtt 18364601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 43 - 372
Target Start/End: Original strand, 36597995 - 36598324
Alignment:
Q  43 atatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactaggagtggacaactcaa 142  Q
    ||||||| || |||||||||| |||||| |||||||||||||||||||  | | ||||||| || ||||||||| ||||||||||||   || ||||| |    
T  36597995 atatttatttttttaacagaaaaaagactgctcccacatattttctgaacaagcataccggaaaaagtaaaggtacaaagactaggaacagataactcga 36598094  T
Q  143 tttgggaaaaattagatgaattatgatgcatggctaaatcgacaagtgtctcacttgatatcttgaggatttgagcatcctctatcttacaaccgtaaag 242  Q
    ||| || ||   | || |||  || |||||| || |||| |||||||||||||||||||||  |||| ||||||||||| | || |||||||||  |||     
T  36598095 ttttggcaattcttgaagaacaataatgcatcgcaaaattgacaagtgtctcacttgatatgctgagaatttgagcatcttttaccttacaaccagaaat 36598194  T
Q  243 gaccaaactattcaacttagtaaaggcggaaaaggggtcaacacagccgtttttatcaccccaaaaggcgaaatttgttagatccaagctggtcaatgct 342  Q
     ||||||||||||||||| | ||||||||||||||| ||| |||| ||||||| | |||| |||||||  |||| || |||||| ||| ||||||||       
T  36598195 aaccaaactattcaacttgggaaaggcggaaaagggctcagcacaaccgttttcaccaccgcaaaaggaaaaatgtgatagatctaagttggtcaataaa 36598294  T
Q  343 ggcaaattcaaatattttggaaatattgtt 372  Q
    |||||||||||| |||||||||||| ||||    
T  36598295 ggcaaattcaaagattttggaaataatgtt 36598324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 36 - 372
Target Start/End: Complemental strand, 36910287 - 36909951
Alignment:
Q  36 tgcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactaggagtggac 135  Q
    |||||| |||||||||||||||| |||||| |||| ||||||| |||||||||||  | |   |||||||| ||||||||| |||||||| ||||  ||     
T  36910287 tgcatcgatatttacttgtttaatagaagagagactgctcccatatattttctgaagaaggtcaccggtaaaagtaaaggtacaaagacttggagcagat 36910188  T
Q  136 aactcaatttgggaaaaattagatgaattatgatgcatggctaaatcgacaagtgtctcacttgatatcttgaggatttgagcatcctctatcttacaac 235  Q
    ||||  | || |  ||| | |  | ||||||  |||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| || || ||| |    
T  36910187 aacttgaatttgacaaagtcaagtaaattatcgtgcagggctaaattgacaagtgtctcacttgatatgttgaggatttgagcatcctttacctcacagc 36910088  T
Q  236 cgtaaaggaccaaactattcaacttagtaaaggcggaaaaggggtcaacacagccgtttttatcaccccaaaaggcgaaatttgttagatccaagctggt 335  Q
        || |||||||||||||||||| ||||||||| ||||||| ||| |||| ||||||| |  ||| |||||||| || |||  ||||| |||| ||||    
T  36910087 tactaatgaccaaactattcaacttggtaaaggcgaaaaagggctcagcacaaccgttttcactaccgcaaaaggcaaagttttctagatacaaggtggt 36909988  T
Q  336 caatgctggcaaattcaaatattttggaaatattgtt 372  Q
    |||    || ||||||||| |||||||||||| ||||    
T  36909987 caagaaagggaaattcaaagattttggaaataatgtt 36909951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 46 - 382
Target Start/End: Original strand, 36636305 - 36636641
Alignment:
Q  46 tttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactaggagtggacaactcaattt 145  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||  |||| |||| |||| ||||||||| |||||||| ||||   | ||||||||||    
T  36636305 tttacttgtttgacagaagaaagaccactcccacatattttctgaacaggagtaccagtaaaagtaaaggtacaaagacttggagcacataactcaattt 36636404  T
Q  146 gggaaaaattagatgaattatgatgcatggctaaatcgacaagtgtctcacttgatatcttgaggatttgagcatcctctatcttacaaccgtaaaggac 245  Q
      | ||| |    ||||| || | ||||    |||| |||||| || |||||||||||| |||||||||| ||||||  || | ||||||    || |||    
T  36636405 ttgcaaagtcttctgaataattacgcattttaaaattgacaagggtttcacttgatatcctgaggatttgtgcatcccttaccctacaactacgaatgac 36636504  T
Q  246 caaactattcaacttagtaaaggcggaaaaggggtcaacacagccgtttttatcaccccaaaaggcgaaatttgttagatccaagctggtcaatgctggc 345  Q
    ||||||| ||||||| | ||||||  ||||||| ||| |||| || |||| | |||| ||||||  ||||||||||||||  ||| |||| |||| ||||    
T  36636505 caaactagtcaacttgggaaaggccaaaaagggctcagcacaaccattttcaccaccgcaaaagttgaaatttgttagatataagttggttaatgttggc 36636604  T
Q  346 aaattcaaatattttggaaatattgttccaaaattac 382  Q
    ||||||||| |||||||||||| | ||||| ||||||    
T  36636605 aaattcaaagattttggaaataatattccagaattac 36636641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 20211227 - 20211405
Alignment:
Q  34 tttgcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactaggagtgg 133  Q
    |||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |||||||| |||   |    
T  20211227 tttgcagcaatatttacatgtttcacagaagaaagaccgcttccacatattttctgatcaggaataccggtaaaagtaaaggtacaaagactcggaccag 20211326  T
Q  134 acaactcaatttgggaaaaattagatgaattatgatgcatggctaaatcgacaagtgtctcacttgatatcttgaggat 212  Q
    | |||||||||| || ||| |  ||||||| || |||||| ||||||  |||||||||||  |||||||| || |||||    
T  20211327 ataactcaattttggcaaagtcggatgaatcattatgcatagctaaaatgacaagtgtcttgcttgatatatttaggat 20211405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 175 - 372
Target Start/End: Original strand, 36643123 - 36643320
Alignment:
Q  175 gctaaatcgacaagtgtctcacttgatatcttgaggatttgagcatcctctatcttacaaccgtaaaggaccaaactattcaacttagtaaaggcggaaa 274  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||    || | |||||||||||||||| | ||||||  |||    
T  36643123 gctaaattgacaagtgtctcacttgatatgttgaggatttgagcatcctttatcttacaacaacgaatgcccaaactattcaactttggaaaggccaaaa 36643222  T
Q  275 aggggtcaacacagccgtttttatcaccccaaaaggcgaaatttgttagatccaagctggtcaatgctggcaaattcaaatattttggaaatattgtt 372  Q
    |||| ||| |||| ||| ||| | |||| |||||| | ||||||| || ||| ||| |||||||    |||||||||||| |||||||||||| ||||    
T  36643223 agggatcagcacaaccgctttcaccaccgcaaaagactaaatttgctaaatctaagttggtcaacaaaggcaaattcaaagattttggaaataatgtt 36643320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 175 - 372
Target Start/End: Original strand, 36665400 - 36665597
Alignment:
Q  175 gctaaatcgacaagtgtctcacttgatatcttgaggatttgagcatcctctatcttacaaccgtaaaggaccaaactattcaacttagtaaaggcggaaa 274  Q
    ||||||| | ||||||| |||||||||||  |||||||||||||||||| || ||||||||    |||| |||||||||||||| | |||||| ||||||    
T  36665400 gctaaattggcaagtgtatcacttgatatggtgaggatttgagcatcctttaccttacaactactaagggccaaactattcaacatggtaaagacggaaa 36665499  T
Q  275 aggggtcaacacagccgtttttatcaccccaaaaggcgaaatttgttagatccaagctggtcaatgctggcaaattcaaatattttggaaatattgtt 372  Q
    |||| ||| |||| ||| ||| | |||| || |||||||||||||||| ||| ||||||||||||   |||||||||||  | |||||||||| ||||    
T  36665500 agggctcagcacaaccgctttcaccaccgcagaaggcgaaatttgttatatctaagctggtcaataaaggcaaattcaacgaatttggaaataatgtt 36665597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 212
Target Start/End: Complemental strand, 28125536 - 28125361
Alignment:
Q  36 tgcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactaggagtggac 135  Q
    |||| |||||||||| ||||| ||||||||||||| ||| |||||||||||||||| |||||||||||||| ||||||||  |||||||| |||   ||     
T  28125536 tgcagcaatatttacatgtttcacagaagaaagactgcttccacatattttctgatcaggaataccggtaaaagtaaaggaacaaagactcggaccaga- 28125438  T
Q  136 aactcaatttgggaaaaattagatgaattatgatgcatggctaaatcgacaagtgtctcacttgatatcttgaggat 212  Q
     ||||||||| || ||| |  ||||||| || |||||| |||||| ||||||||||||| |||||||| || |||||    
T  28125437 tactcaattttggcaaagtcggatgaatcattatgcatagctaaaacgacaagtgtctcgcttgatatgtttaggat 28125361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 287
Target Start/End: Original strand, 36612716 - 36612972
Alignment:
Q  31 atttttgcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactaggag 130  Q
    |||| |||| ||||||||||| ||||||||||||||||||| |||||||||||| |||||| ||||  |||||||  ||||||||| ||||||||  |||    
T  36612716 atttctgcagcaatatttactagtttaacagaagaaagaccactcccacatattctctgatcaggatgaccggtataagtaaaggtacaaagactctgag 36612815  T
Q  131 tggacaactcaatttgggaaaaattagatgaattatgatgcatggctaaatcgacaagtgtctcacttgatatcttgaggatttgagcatcctctatctt 230  Q
    |  | |||| ||||| |  ||| | | ||||| | | |||||| |||||||  || |||||||| ||||||||| ||||| |||| ||||||   ||       
T  36612816 taaataactgaattttgtcaaagtcatatgaactttcatgcatagctaaatttactagtgtctcgcttgatatcctgagggtttgtgcatccctaattgc 36612915  T
Q  231 acaaccgtaaaggaccaaactattcaacttagtaaaggcggaaaaggggtcaacaca 287  Q
    ||| |  | || |||||||||||||||||| |||||||||||| |||| ||||||||    
T  36612916 acatctatcaatgaccaaactattcaacttggtaaaggcggaagagggttcaacaca 36612972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 36627550 - 36627658
Alignment:
Q  23 ttgaatgcatttttgcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaag 122  Q
    |||||| ||||  |||| |||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||||   ||||||| |||||    
T  36627550 ttgaatacattactgcagcaatatttacttgtttaacagaagaaagaccgctcccacatattttatgaaaaggtataccggtaaacttaaaggtacaaag 36627649  T
Q  123 actaggagt 131  Q
    ||| |||||    
T  36627650 acttggagt 36627658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 212
Target Start/End: Complemental strand, 29677215 - 29677038
Alignment:
Q  36 tgcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagact-aggagtgga 134  Q
    |||| |||||||||| ||||| ||||||||||||||||| |||||||||| ||||| |||| |||| || | ||||| ||| |||||||| |||||| ||    
T  29677215 tgcagcaatatttacatgtttcacagaagaaagaccgcttccacatatttgctgatcaggactaccagtgaaagtaagggtacaaagactcaggagtaga 29677116  T
Q  135 caactcaatttgggaaaaattagatgaattatgatgcatggctaaatcgacaagtgtctcacttgatatcttgaggat 212  Q
     ||||||||||  | ||| |  ||||| |||  |||| |  |||||| |||||||||||| |||||||| || |||||    
T  29677115 taactcaatttttgcaaagtcggatgacttactatgcgtatctaaattgacaagtgtctcgcttgatatgtttaggat 29677038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 318
Target Start/End: Complemental strand, 36629907 - 36629772
Alignment:
Q  183 gacaagtgtctcacttgatatcttgaggatttgagcatcctctatcttacaaccgtaaaggaccaaactattcaacttagtaaaggcggaaaaggggtca 282  Q
    |||||| ||||||||||||||  |||||||||||||||||| || || |||||    ||||| ||||||||||||||| |||||||  |||||||| |||    
T  36629907 gacaagggtctcacttgatatgctgaggatttgagcatcctttacctcacaactacgaaggatcaaactattcaactttgtaaaggtcgaaaagggctca 36629808  T
Q  283 acacagccgtttttatcaccccaaaaggcgaaattt 318  Q
     |||| ||||||| | | || |||||||| ||||||    
T  36629807 gcacaaccgttttcaccgccgcaaaaggcaaaattt 36629772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 208
Target Start/End: Original strand, 38862637 - 38862804
Alignment:
Q  43 atatttacttgtttaacagaagaaagaccgctcc--cacatattttctgattaggaataccggtaatagtaaaggtgcaaagactaggagtggacaactc 140  Q
    ||||||||| ||||||||||||||||||| ||||  |||||||| | ||||||||| ||||| ||| ||||||||| || ||||| ||||| || | |||    
T  38862637 atatttactcgtttaacagaagaaagaccactcccacacatattatatgattaggactaccgctaaaagtaaaggtacatagacttggagtagatagctc 38862736  T
Q  141 aatttgggaaaaattagatgaattatgatgcatggctaaatcgacaagtgtctcacttgatatcttga 208  Q
    |||||    ||| ||  |||||||||  ||||| ||||||| |||||||   ||||||||||| ||||    
T  38862737 aattttctcaaatttgaatgaattattgtgcatagctaaattgacaagttgttcacttgatatgttga 38862804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 36642953 - 36643046
Alignment:
Q  38 catcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactaggagt 131  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| || || ||||  ||| |||||| || |||||||| |||||    
T  36642953 catcaatatttacttgtttaacagaggaaagtccgctcccgcatattttttgaataagactaccaataaaagtaaatgtacaaagacttggagt 36643046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 55966550 - 55966731
Alignment:
Q  187 agtgtctcacttgatatcttgaggatttgagcatcctctatcttacaaccgtaaaggaccaaactattcaacttagtaaaggcggaaaaggggtcaacac 286  Q
    ||||||| |||||||||| |||| ||||| ||||||  || || |||| |   || |||||||||| ||||||| |||||| |  ||||||| ||| |||    
T  55966550 agtgtctaacttgatatcctgagaatttgtgcatcccttacctcacaaacacgaatgaccaaactactcaacttggtaaagcccaaaaagggctcagcac 55966649  T
Q  287 agccgtttttatcaccccaaaaggcgaaatttgttagatccaagctggtcaatgctggcaaattcaaatattttggaaatat 368  Q
    | ||||||| |||||| || |||  |||| || |||||  ||||||||| |||||||||||| ||| | |||| ||||||||    
T  55966650 aaccgttttcatcaccgcagaagatgaaagtttttagactcaagctggttaatgctggcaaaatcagagatttcggaaatat 55966731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 55966197 - 55966248
Alignment:
Q  36 tgcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttc 87  Q
    |||| ||||||||||||||||||||||||||||| | |||||||||||||||    
T  55966197 tgcaccaatatttacttgtttaacagaagaaagagcactcccacatattttc 55966248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 36613013 - 36613058
Alignment:
Q  328 aagctggtcaatgctggcaaattcaaatattttggaaatattgttc 373  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  36613013 aagctggtcaatgctggcaaattcaaagattttggaaagattgttc 36613058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 373
Target Start/End: Original strand, 38862855 - 38862944
Alignment:
Q  284 cacagccgtttttatcaccccaaaaggcgaaatttgttagatccaagctggtcaatgctggcaaattcaaatattttggaaatattgttc 373  Q
    |||| ||||||| | |||| |||||| |||||||||||| | | ||||| || ||||| |||||||||||| |||||||||||| |||||    
T  38862855 cacaaccgttttcaccaccacaaaagacgaaatttgttacacctaagctagttaatgcgggcaaattcaaagattttggaaataatgttc 38862944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 36665240 - 36665282
Alignment:
Q  48 tacttgtttaacagaagaaagaccgctcccacatattttctga 90  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  36665240 tacttgtttaacagaagaaagtccgctcccacatatttcctga 36665282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 36630035 - 36629952
Alignment:
Q  46 tttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactagga 129  Q
    ||||||||||||| |||||| |||| ||||||||| ||||||||| || |   |||||||| ||| ||||| |||||||| |||    
T  36630035 tttacttgtttaatagaagagagactgctcccacaaattttctgaataaggtcaccggtaaaagtgaaggtacaaagacttgga 36629952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 18360756 - 18360665
Alignment:
Q  43 atatttacttgtttaaca---gaa-gaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactaggag 130  Q
    ||||||||||||||||||   ||| ||||||||||||||| |||||||||||   ||||  |||| || ||||||||| |||||||| ||||    
T  18360756 atatttacttgtttaacaacagaacgaaagaccgctcccaaatattttctgaaccggaaacccggcaaaagtaaaggtacaaagacttggag 18360665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 36602173 - 36602264
Alignment:
Q  43 atatttacttgtttaaca---gaa-gaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactaggag 130  Q
    ||||||||||||||||||   ||| ||||||||||||||| |||||||||||   ||||  |||| || ||||||||| |||||||| ||||    
T  36602173 atatttacttgtttaacaacagaacgaaagaccgctcccaaatattttctgaaccggaaacccggcaaaagtaaaggtacaaagacttggag 36602264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 37 - 365
Target Start/End: Original strand, 42602238 - 42602564
Alignment:
Q  37 gcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactaggagtggaca 136  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||||||||| | || | ||| | |||||||| |  ||||| || ||||  || |    
T  42602238 gcatcaatatttacatgtttaacagaaga--gaccgctcccacatattttctgatcaagactgccgttgatagtaaatgcacaaaggcttggagcagata 42602335  T
Q  137 actcaatttgggaaaaattagatgaattatgatgcatggctaaatcgacaagtgtctcacttgatatcttgaggatttgagcatcctctatcttacaacc 236  Q
    |||| |||| || |||   ||||||| ||| |||||| ||||||| |||||||||||||||||||||| |||||||||| ||||| | || | ||||||     
T  42602336 actcgattttggtaaaggaagatgaaatattatgcatagctaaattgacaagtgtctcacttgatatcctgaggatttgtgcatcttttaccgtacaact 42602435  T
Q  237 gtaaaggaccaaactattcaacttagtaaaggcggaaaaggggtcaacacagccgtttttatcaccccaaaaggcgaaatttgttagatccaagctggtc 336  Q
    |  || |||||||||||||||| | |||||||   ||||||| ||| |||  || |||| |||||| |||||||| |||||||| |||||||||||||||    
T  42602436 gctaatgaccaaactattcaacctggtaaaggtcaaaaagggttcagcacgaccattttcatcaccgcaaaaggcaaaatttgtgagatccaagctggtc 42602535  T
Q  337 aatgctggcaaattcaaatattttggaaa 365  Q
    ||||| |||||||||||| ||||||||||    
T  42602536 aatgccggcaaattcaaagattttggaaa 42602564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 366
Target Start/End: Original strand, 33839645 - 33839975
Alignment:
Q  36 tgcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactaggagtggac 135  Q
    ||||||||| ||||||| |||||| |||||||  || ||||||||||||||||| |||||| ||||   || |||||||||||| ||||| ||||  |      
T  33839645 tgcatcaatgtttacttctttaacggaagaaaatccactcccacatattttctgtttaggagtaccataaaaagtaaaggtgcagagactcggagcagct 33839744  T
Q  136 aactcaatttgggaaaaattagatgaattatgatgcatggctaaatcgacaagtgtctcacttgatatcttgaggatttgagcatcctctatcttacaac 235  Q
    | ||| |||| |  ||| ||  || |||| | || ||    ||||| | | ||||||||||||||||||  ||||||||| |||||||  | | ||||||    
T  33839745 agctcgattttgtcaaagttgaataaattcttatacaaatataaattgtctagtgtctcacttgatatccggaggatttgtgcatccttaaccatacaac 33839844  T
Q  236 cgtaaaggaccaaactattcaacttagtaaaggcggaaaaggggtcaacacagccgtttttatcaccccaaaaggcgaaatttgttagatccaagctggt 335  Q
        || || ||| ||||||||||| |||||||| |||||||| ||| |||| | ||||| |||||| || |||| ||||   |||||||||||||||||    
T  33839845 gactaatgatcaagctattcaacttggtaaaggctgaaaagggctcagcacaacggttttcatcaccgcagaaggtgaaaccagttagatccaagctggt 33839944  T
Q  336 caatgctggcaaattcaaatattttggaaat 366  Q
     || ||||||| ||||| |||||| ||||||    
T  33839945 taacgctggcatattcagatatttcggaaat 33839975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 10812752 - 10812471
Alignment:
Q  36 tgcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactaggagtggac 135  Q
    ||||| |||||| |||| |||||||||||| |||   || |||| ||||||| |||  ||||| |||  || |||||| || |||||  | ||||||||     
T  10812752 tgcataaatattgacttctttaacagaagagagattacttccacctattttcggatgtggaatcccgtaaaaagtaaacgtacaaaggtttggagtggat 10812653  T
Q  136 aactcaatttgggaaaaattagatgaattatgatgcatggctaaatcgacaagtgtctcacttgatatcttgaggatttgagcatcctctatcttacaac 235  Q
    | |||||||| || ||  ||||||||| ||| || ||| || ||||  |||||||||||||||||||| |||| |||||| |  |||  |||||||||||    
T  10812652 agctcaattttggcaattttagatgaactataatccatagcaaaatttacaagtgtctcacttgatatgttgatgatttgtgtgtccattatcttacaac 10812553  T
Q  236 cgtaaaggaccaaactattcaacttagtaaaggcggaaaaggggtcaacacagccgtttttatcaccccaaaaggcgaaatt 317  Q
    | | || || |||||| ||||| || |||||||| || ||||| |||||| || |||||| | ||||  |||||| ||||||    
T  10812552 catgaatgatcaaactcttcaatttggtaaaggccgagaagggctcaacatagtcgttttcaccaccgtaaaaggtgaaatt 10812471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 371
Target Start/End: Original strand, 10811887 - 10812223
Alignment:
Q  36 tgcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaata-gtaaaggtgcaaagactaggagtgga 134  Q
    ||||| |||||| |||| ||||||| |||| |||   || |||| |||||||||||  ||||| |||  || | ||||| || ||||| || ||||||||    
T  10811887 tgcataaatattgacttctttaacataagagagattacttccacctattttctgatgtggaatcccgtaaaaaagtaaacgtacaaaggcttggagtgga 10811986  T
Q  135 caactcaatttgggaaaaattagatgaattatgatgcatggctaaatcgacaagtgtctcacttgatatcttgaggatttgagcatcctctatcttacaa 234  Q
     ||||||||||  | ||  ||||||||| ||| |||||| || ||||  |||||||||||||||||||| |||| |||||| |  |||  || |||||||    
T  10811987 taactcaattttagcaattttagatgaactataatgcatagcaaaattaacaagtgtctcacttgatatgttgatgatttgtgtgtccattaccttacaa 10812086  T
Q  235 ccgtaaaggaccaaactattcaacttagtaaaggcggaaaaggggtcaacacagccgtttttatcaccccaaaaggcgaaatttgttagatccaagctgg 334  Q
    ||   || || |||||| ||||| || |||||||| || ||||| ||  || ||||||||| | ||||  ||||||  |||||  ||||||||||  |      
T  10812087 ccacgaatgatcaaactcttcaatttggtaaaggccgagaagggctctgcatagccgttttcaccaccgtaaaaggtcaaattgcttagatccaacattt 10812186  T
Q  335 tcaatgctggcaaattcaaatattttggaaatattgt 371  Q
    | |||||| | ||||||||  |||| |||||||||||    
T  10812187 ttaatgctagtaaattcaaggatttaggaaatattgt 10812223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 33843559 - 33843630
Alignment:
Q  30 catttttgcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaatacc 101  Q
    ||||||||||||||| ||||||| ||||||||||||||  || |||||| |||||||||||| |||| ||||    
T  33843559 catttttgcatcaatgtttacttctttaacagaagaaaatccactcccatatattttctgatcaggagtacc 33843630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 35336480 - 35336427
Alignment:
Q  38 catcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgat 91  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35336480 catcaatgtttacttgtttaacagaagaaagaccgctcccacatattttctgat 35336427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 367
Target Start/End: Complemental strand, 25597435 - 25597311
Alignment:
Q  243 gaccaaactattcaacttagtaaaggcggaaaaggggtcaacacagccgtttttatcaccccaaaaggcgaaatttgttagatccaagctggtcaatgct 342  Q
    |||||||||||||||| |  |||||||| ||||||| |||||||| | | ||| |||||| |||||||| |||||   ||||  |||||| || ||||||    
T  25597435 gaccaaactattcaacattttaaaggcgaaaaagggctcaacacaactgctttcatcaccgcaaaaggcaaaattctgtagaaacaagctagttaatgct 25597336  T
Q  343 ggcaaattcaaatattttggaaata 367  Q
    ||||| |||| | |||| |||||||    
T  25597335 ggcaatttcagagatttcggaaata 25597311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 372
Target Start/End: Complemental strand, 25602231 - 25602102
Alignment:
Q  243 gaccaaactattcaacttagtaaaggcggaaaaggggtcaacacagccgtttttatcaccccaaaaggcgaaatttgttagatccaagctggtcaatgct 342  Q
    |||||||||||||||| |  |||||||  ||||||| |||||||| | | ||| |||||| |||||||| |||||  | |||| |||||| ||||| ||     
T  25602231 gaccaaactattcaacattttaaaggccaaaaagggttcaacacaactgctttcatcaccgcaaaaggcaaaattcatcagatacaagctagtcaacgcg 25602132  T
Q  343 ggcaaattcaaatattttggaaatattgtt 372  Q
    |||||  ||| | |||| ||||||| ||||    
T  25602131 ggcaatatcagagatttcggaaataatgtt 25602102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 370
Target Start/End: Original strand, 43863722 - 43863765
Alignment:
Q  327 caagctggtcaatgctggcaaattcaaatattttggaaatattg 370  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||    
T  43863722 caaggtggttaatgctggcaaattcaaatgttttggaaatattg 43863765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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