View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19325_high_1 (Length: 457)
Name: NF19325_high_1
Description: NF19325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19325_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31821771 - 31821532
Alignment:
| Q |
1 |
tatcaaactaaaacaagaaatttgaaaaatgtaaagaattttaatgtgcttacttcggtaaagaacaatctcttggctgccacctccaattctgatacaa |
100 |
Q |
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| T |
31821771 |
tatcaaactaaaacaagaaatttgaaaaatgtaaagaattttaatgtgcttacttcggtaaagaacaatctcttggctgccacctccaattctgatacaa |
31821672 |
T |
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| Q |
101 |
agaatcacttcttccattcttcatgcatgtaacttgtgaagtaagaaattcacattgttcttctttgtataaaggatgtgtcacattatcaagaacccat |
200 |
Q |
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| T |
31821671 |
agaatcacttcttccattcttcatgcatgtaacttgtgaagtaagaaattcacattgttcttctttgtataaaggatgtgtcacattatcaagaacccat |
31821572 |
T |
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| Q |
201 |
ttccctgtaaacaaatcacaatcttcttgaggtaacacaa |
240 |
Q |
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| T |
31821571 |
ttccctgtaaacaaatcacaatcttcttgaggtaacacaa |
31821532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 279 - 440
Target Start/End: Complemental strand, 31821493 - 31821332
Alignment:
| Q |
279 |
gttaacacaacgtctttcaaatcaaccggttcttggatttcctcagaatccttaacctcagagtttttgccatctctttgaacataattgtctggttcaa |
378 |
Q |
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| T |
31821493 |
gttaacacaacgtctttcaaattaaccggttcttggatttcctcagaatccttaacctcagagtttttgccatctctttgaacagaattgtctggttcag |
31821394 |
T |
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| Q |
379 |
atttttcttcttggatttcttgagttttgtatttgatactcgagaatgaaaactccgctatt |
440 |
Q |
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| T |
31821393 |
atttttcttcttggatttcttgagttttgtatttgatactcgagaatgaaaactccgctatt |
31821332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 62 - 225
Target Start/End: Complemental strand, 35688616 - 35688453
Alignment:
| Q |
62 |
agaacaatctcttggctgccacctccaattctgatacaaagaatcacttcttccattcttcatgcatgtaacttgtgaagtaagaaattcacattgttct |
161 |
Q |
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|||||| ||| |||||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||| ||||| ||||||| ||| |
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| T |
35688616 |
agaacagtcttttggctgccatttccaattctgatacaaagaatcacgtcttccattcctcatacatgtaacttgagaagtgagaaactcacattcatct |
35688517 |
T |
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| Q |
162 |
tctttgtataaaggatgtgtcacattatcaagaacccatttccctgtaaacaaatcacaatctt |
225 |
Q |
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| T |
35688516 |
tctttatacaaaggatgtgtcacgttatctaaaacccatttaccattgaacaagtcacaatctt |
35688453 |
T |
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