View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19325_high_7 (Length: 213)
Name: NF19325_high_7
Description: NF19325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19325_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 7210181 - 7209997
Alignment:
| Q |
1 |
caatatctttacttagagtaacttgaagagaggtcaaaaagataaacaatgcaaggtagagtctcatgatcactgaatcaattgcagcagcatccaagtc |
100 |
Q |
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| T |
7210181 |
caatatctttactaagagtaacttgaagagaggtcaaaaagaaaaacaatgcaaggtagagtctcatgatcactgaatcaattgcagcagcatccaagtc |
7210082 |
T |
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| Q |
101 |
caacacagtaactaatccaaattaactgcagtaatagataaaagctgatttatagaaagatcttatgaaactatagagtagaatt |
185 |
Q |
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| T |
7210081 |
caacacagtaactaatccaaattaactgcagtaatagataaaagctgatttatggaaagatcttatgaaactatagagtagaatt |
7209997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 7196521 - 7196317
Alignment:
| Q |
1 |
caatatctttacttagagtaacttgaagagaggtcaaaaagataaacaatgcaaggtagagtctcatgatcactgaatcaattgcagcagcatccaagtc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
7196521 |
caatatctttacttagagtaacttgaagagaggccaaaaagaaaaacaatgcaaggtagagtctcatgatgactgaatgaattgcagcagcatccaagtc |
7196422 |
T |
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| Q |
101 |
caacac-------agtaactaatccaaattaactgcagtaatagataaaagctgatttatagaaagatcttatgaaactatagagtagaattcaaacttt |
193 |
Q |
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| T |
7196421 |
caacacagtagtcagtaactaatccaaattaactgcagtaatagataaaagctgatttatagaaagatcttatgaaactatagagtagaattcaaacttt |
7196322 |
T |
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| Q |
194 |
ctttt |
198 |
Q |
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| T |
7196321 |
ctttt |
7196317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 7203807 - 7203614
Alignment:
| Q |
5 |
atctttacttagagtaacttgaagagaggtcaaaaagataaacaatgcaaggtagagtctcatgatcactgaatcaattgcagcagcatccaagtccaac |
104 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7203807 |
atctttacttagagtaacttgaagagaggccaaaaagatgaacaatgcaagggagagtctcatgatgactgaatcaattgcagcagcatccaagtccaac |
7203708 |
T |
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| Q |
105 |
acagtaactaatccaaattaactgcagtaatagataaaagctgatttatagaaagatcttatgaaactatagagtagaattcaaactttctttt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | | ||||||||||||||||||| |||||||||||| |
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| T |
7203707 |
acagtaactaatccaaattaactgcagtaatagataaaagttgatttatagaaagatgtgacgaaactatagagtagaattaaaactttctttt |
7203614 |
T |
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