View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19325_low_2 (Length: 336)
Name: NF19325_low_2
Description: NF19325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19325_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 2786848 - 2786548
Alignment:
| Q |
18 |
aagggggcttcattgtgtacaatatcacataactcgaaatgaggctccatttaccctaaacatcttgtagaaggaaacaccatctacaaattcattgaag |
117 |
Q |
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| T |
2786848 |
aagggggcttcattgtgtacaatatcacataactccaaatgaggctccatttaccctaaacatcttgtagaaggaaacaccatctacaaattcattgaag |
2786749 |
T |
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| Q |
118 |
agacaaacaatagaactaggcaaaacattagattcaatagtcacacacaaatcatca-aagaaacatatggagatttaccaataaataatgttttcctaa |
216 |
Q |
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| T |
2786748 |
agacaaacaatagaactaggcaaaacattagattcaatagtcacacgcaaatcatcagaagaaacatatggagatttaccaataaataatgttttcctaa |
2786649 |
T |
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| Q |
217 |
ccaaatgatctctaataaacaagctttcaactctaggtatggagtcatggctacttggttcattagaatgcatgatggatttgcatctttgttctgtagt |
316 |
Q |
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| T |
2786648 |
ccaaatgatctctaataaacaagctttcaactctaggtatggagtcatggctacttgattcattagaatgcatgatggatttgcatctttgttctttagt |
2786549 |
T |
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| Q |
317 |
c |
317 |
Q |
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| T |
2786548 |
c |
2786548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 27743436 - 27743140
Alignment:
| Q |
18 |
aagggggcttcattgtgtacaatatcacataactcgaaatga--ggctccatttaccctaaacatcttgtagaaggaaacaccatctacaaattcattga |
115 |
Q |
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| T |
27743436 |
aagggggcttcattgtgaacaatatcacataactccaaatcataggctccatttcccctaaacatcttgtagaaggaaacaccatctacaaattcattga |
27743337 |
T |
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| Q |
116 |
agagacaaacaatagaactaggcaaaacattagattcaatagtcacacacaaatcatcaa-agaaacatatggagatttaccaataaataatgttttcct |
214 |
Q |
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| T |
27743336 |
agagacaaacaatagaactaggcaaggcattagattcagtagtcacacataaatcagcaggagaaacatatggagatttaccaatcaataatgttttccc |
27743237 |
T |
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| Q |
215 |
aaccaaatgatctctaataaacaagctttcaactctaggtatggagtcatggctacttggttcattagaatgcatgatggatttgcatctttgttct |
311 |
Q |
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| T |
27743236 |
aaccaaatgatctctaataaacaagctttcacctctagggatggagtcatgactacttgattcattagcatgcatgatggatctgcatctttgttct |
27743140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 21799229 - 21799138
Alignment:
| Q |
209 |
tttcctaaccaaatgatctctaataaacaagctttcaactctaggtatggagtcatggctacttggttcattagaatgcatgatggatttgc |
300 |
Q |
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| T |
21799229 |
tttcccaaccacatgctctctaataaacaaactttcaactctaggtgtggggtcatgattatgcgattcattagcatgcatgatggatttgc |
21799138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 11463224 - 11463280
Alignment:
| Q |
73 |
ctaaacatcttgtagaaggaaacaccatctacaaattcattgaagagacaaacaata |
129 |
Q |
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||||||||||| | || ||||||| |||| |||||||| ||||||| |||||||||| |
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| T |
11463224 |
ctaaacatcttattgatggaaacaacatccacaaattccttgaagaaacaaacaata |
11463280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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