View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19325_low_3 (Length: 254)
Name: NF19325_low_3
Description: NF19325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19325_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 7196691 - 7196933
Alignment:
| Q |
4 |
gagaataaaatcaatgcttttgaaattttatgtttccttggaaagctgctaacccgttttagtcattgttcaattgaatgtggattgatttttcaggact |
103 |
Q |
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| T |
7196691 |
gagaataaaatcaatacttttgaaattttatgtttccttggaaagcagctaacccgttttagtcattgttcaattgaatgtggattgatttttcaggact |
7196790 |
T |
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| Q |
104 |
tatctcgtcctctccttgccaaagcaatccaaggtttgtatgtctaaattacttaaatgtatatgatttagacaaattgttagttttatgaccgatgttt |
203 |
Q |
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| T |
7196791 |
tatctcgtcctctccttgccaaagcaatccaaggtttgtatgtctaaattacttaaatgtatatgatttagacaaattgttagttttatgaccgatgttt |
7196890 |
T |
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| Q |
204 |
tataaatcggataattattttggtctcagcggtttgatctctg |
246 |
Q |
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| T |
7196891 |
tataaatcggataattattttggtctcagcggtttgatctctg |
7196933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 7210441 - 7210642
Alignment:
| Q |
11 |
aaatcaatgcttttgaaattttatgtttccttggaaagctgctaacccgttttagtcattgttcaattgaatgtggattgatttttcaggacttatctcg |
110 |
Q |
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| T |
7210441 |
aaatcaatgctcttaaaattttatgtatccttggaaagcagctaacctgttttagtcattgttcaattcaatgttgattgatttttcaggacttatctca |
7210540 |
T |
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| Q |
111 |
tcctctccttgccaaagcaatccaaggtttgtatgtctaaattacttaaatgtatatgatttagacaaattgttagttttatgaccgatgttttataaat |
210 |
Q |
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| T |
7210541 |
tcctttccttgccaaagcaatccaaggtctgtatgtctaaattactgaaatgtatatgatttagaaaatctgttagattgatgaccgatgttttaaaaat |
7210640 |
T |
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| Q |
211 |
cg |
212 |
Q |
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| T |
7210641 |
cg |
7210642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 7204053 - 7204176
Alignment:
| Q |
95 |
ttcaggacttatctcgtcctctccttgccaaagcaatccaaggtttgtatgtctaaattacttaaatgtatatgatttagacaaattgttagttttatga |
194 |
Q |
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| T |
7204053 |
ttcaggacttatctcatcctctccttgccaaagcaatccaaggtttgtatgtctaaattacttaaatgtatatgatttagataatttgttagtattatga |
7204152 |
T |
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| Q |
195 |
ccgatg-ttttataaatcggataa |
217 |
Q |
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| T |
7204153 |
tcgatgtttttaaaaatcggataa |
7204176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 7203991 - 7204056
Alignment:
| Q |
11 |
aaatcaatgcttttgaaattttatgtttccttggaaagc-tgctaacccgttttagtcattgttca |
75 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||| |||||| |||||||||| |
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| T |
7203991 |
aaatcaatgcttttaaaattttatgtttccttggaaagcaagctaacctgttttaatcattgttca |
7204056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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