View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19325_low_4 (Length: 250)
Name: NF19325_low_4
Description: NF19325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19325_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 31822070 - 31821830
Alignment:
| Q |
10 |
attatacttgtgattaatcattatgttggcatcaatatattccctacttttgaccacaaagagaaaaagttaaagaagacaaacctcaattctgaaaata |
109 |
Q |
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| T |
31822070 |
attatacttgtgattaatcattatgttggcatcaatatattccctacttttgaccacaaagagaaaaagttaaagaagacaaacctcaattctgaaaata |
31821971 |
T |
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| Q |
110 |
gagagagaaccagttttgttcaagctctttttgctttgaggaataacagattgaaccaaacaaatcattgattcccattggttcctattcaatgagtctc |
209 |
Q |
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| T |
31821970 |
gagagagaaccagttttgttcaagctctttttgctttgaggaataacagattgaaccaaacaaatcattgattcccattggttcctattcaatgagtctc |
31821871 |
T |
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| Q |
210 |
caacaaacataagcctcttccctctaagcttctcaagtaga |
250 |
Q |
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| T |
31821870 |
caacaaacataagcctcttccctctaagcttctcaagtaga |
31821830 |
T |
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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 35688829 - 35688742
Alignment:
| Q |
155 |
acagattgaaccaaacaaatcattgattcccattggttcctattcaatgagtctccaacaaacataagcctcttccctctaagcttct |
242 |
Q |
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| T |
35688829 |
acagattgaaccatacaaaccattgattcccactggtttctattcaaagagtctccaacaaacattaacctcttccctctaatcttct |
35688742 |
T |
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