View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19326_high_5 (Length: 346)
Name: NF19326_high_5
Description: NF19326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19326_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 54881387 - 54881055
Alignment:
| Q |
1 |
gtcccaataaaatgttaaatgttgtcttgcatttggaaatgaactgtctgaagctgcagctgcaaatcgtagttatggatggtcgcaagttaaaagtggt |
100 |
Q |
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| T |
54881387 |
gtcccaataaaatgttaaatgttgtcttgcatttggaaatgaactgtctgaagctacaactgcaaatcgtagttatggatggtcgcaagttaaaagtggt |
54881288 |
T |
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| Q |
101 |
caaagtttgcaaccnnnnnnnctataaacgccatgtttataaacttatgctaaccttttggagtcatcccttttgtatttcaacctagcaaattgtttag |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54881287 |
caaagtttgcaacctttttttctataaacgccatgtttataaacttatgctaaccttttggagtcatcccttttgtatttcaacctagcaaattgtttag |
54881188 |
T |
|
| Q |
201 |
gtaaataaat--tagttaaaaatcaagtagttatcttgtacagttaattttgtccagc-nnnnnnntcttgtgcggttaatgcttatttatcagaaagaa |
297 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54881187 |
gtaaataaattatagttaaaaatcaagtagttatcttgtacagttaattttgtccagcaaaaaaaatcttgtgcggttaatgcttatttatcagaaagaa |
54881088 |
T |
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| Q |
298 |
atggattggactgccgatggaaactatggcatc |
330 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
54881087 |
atggattggactgccgatggaaactatggcatc |
54881055 |
T |
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