View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19326_high_8 (Length: 239)
Name: NF19326_high_8
Description: NF19326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19326_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 24181374 - 24181485
Alignment:
| Q |
116 |
gtggtccaattagtcaaagcacaagcccaagtcaaagtacaagcccaagtcatagcccaagtccaatttcaagcccatcatcaccaccaccactctcaca |
215 |
Q |
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| T |
24181374 |
gtggtccaattagtcaaagcacaagcccaagtcaaagtacaagcccaagtcatagcccaagtccaatttcaagcccatcatcaccaccaccactctcaca |
24181473 |
T |
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| Q |
216 |
tttaccaccttc |
227 |
Q |
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| T |
24181474 |
tttaccaccttc |
24181485 |
T |
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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24181259 - 24181310
Alignment:
| Q |
1 |
gctacggcaacagccagcgcgaaaaacagtccaccttttcttaactgtatct |
52 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24181259 |
gctacggcaacagccagcgcgaaaaacagtccaccttttcttaactgtatct |
24181310 |
T |
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