View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19326_high_9 (Length: 232)
Name: NF19326_high_9
Description: NF19326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19326_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41036572 - 41036792
Alignment:
| Q |
1 |
atgtgtgtaaattgggattaaacattttcctcacttcaatctagtcatggactttctaattaccacaactgactccggaaaaagaaaagattattagtac |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41036572 |
atgtgtgtaaattgggattaaccattttcctcacttcaatctagtcatggaatttctaattaccacaactgactccggaaaaagaaaagattattagtac |
41036671 |
T |
|
| Q |
101 |
tttccatgatagggatgagtactagatatagagcactaagcagcaaaacagtcaagaaattagagccaacactcgtcaattttaatannnnnnnnnctaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41036672 |
tttccatgatagggatgagtactagatatagagcactaagcagcaaaacagtcaagaaattagagccaacactcgtcaattttaata-ttttttttctaa |
41036770 |
T |
|
| Q |
201 |
tactttggtactgatgatgatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41036771 |
tactttggtactgatgatgatg |
41036792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 41046460 - 41046575
Alignment:
| Q |
23 |
cattttcctcacttcaatctagtcatggactttctaattaccacaactgactccggaaaaagaaaagattattagtactttccatgatagggatgagtac |
122 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||| | || | |||||||||||||||||| |||| |
|
|
| T |
41046460 |
cattttcttcaattcaatctagtcatggactttcttattaccacaactgactccaaaaatagaaaagactggtacttctttccatgatagggatgggtac |
41046559 |
T |
|
| Q |
123 |
tagatatagagcacta |
138 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
41046560 |
caaatatagagcacta |
41046575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University