View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19326_low_2 (Length: 487)

Name: NF19326_low_2
Description: NF19326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19326_low_2
NF19326_low_2
[»] chr5 (7 HSPs)
chr5 (18-414)||(21265703-21266098)
chr5 (413-468)||(21265624-21265679)
chr5 (5-42)||(10237466-10237503)
chr5 (5-60)||(25653618-25653673)
chr5 (14-56)||(33848655-33848697)
chr5 (5-42)||(31878435-31878472)
chr5 (10-42)||(36055838-36055870)
[»] scaffold0200 (1 HSPs)
scaffold0200 (5-42)||(24776-24813)
[»] chr2 (4 HSPs)
chr2 (5-42)||(6177827-6177864)
chr2 (5-42)||(18779360-18779397)
chr2 (5-42)||(41643924-41643961)
chr2 (14-45)||(39788545-39788576)
[»] chr1 (1 HSPs)
chr1 (10-42)||(10758264-10758296)
[»] chr4 (2 HSPs)
chr4 (72-106)||(28003170-28003204)
chr4 (14-42)||(2266824-2266852)
[»] chr3 (2 HSPs)
chr3 (5-39)||(7568678-7568712)
chr3 (5-42)||(40640593-40640630)
[»] scaffold0050 (1 HSPs)
scaffold0050 (10-39)||(5645-5674)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 21266098 - 21265703
Alignment:
Q  18 aatacacaaatgctcaatgattgactatagggttaattttaccnnnnnnngtttttctcatgacttcaccagagaattttccatctttgttgctgacata 117  Q
    |||||| ||||||||||||||||||||||||||||||||||||       ||  || |||||| |||||||||||| |||||||||||||||||||||||    
T  21266098 aatacataaatgctcaatgattgactatagggttaattttaccagaaaa-gtcattatcatgagttcaccagagaactttccatctttgttgctgacata 21266000  T
Q  118 catgaacgaggtcgcttttcaatttaattcattcaagctagatatgtgtttacaaaactgtttttctttaacttttcttgtcctcctcatctaaaggttt 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21265999 catgaacggggtcgcttttcaatttaattcattcaagctagatatgtgtttacaaaactgtttttctttaacttttcttgtcctcctcatctaaaggttt 21265900  T
Q  218 cacaatagcatcacattgtccttcaaaatcctcattaaagcacgtaagcaattagtctcttgtagattttaaaggttatcccagtttctaagcctggtac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21265899 cacaatagcatcacattgtccttcaaaatcctcattaaagcacgtaagcacctagtctcttgtagattttaaaggttatcccagtttctaagcctggtac 21265800  T
Q  318 ccgtgatgatactagatgctgggcagcttctaccatccttagacggaattatagtgagttaaaaatgtacatgtccactacaaatatactagaataa 414  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21265799 ccgtgatgatactagatgttgggcagcttctaccatccttagagggaattatagtgagttaaaaatgtgcatgtccactacaaatatactagaataa 21265703  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 413 - 468
Target Start/End: Complemental strand, 21265679 - 21265624
Alignment:
Q  413 aacaaggtacgtatctctgtgcgtaacttcgaggctaatctctaaaaccatgttat 468  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21265679 aacaaggtacgtatctctgtgcctaacttcgaggctaatctctaaaaccatgttat 21265624  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 10237503 - 10237466
Alignment:
Q  5 gtgagatgaattaaatacacaaatgctcaatgattgac 42  Q
    |||| |||||||||||||||||||||||||||||||||    
T  10237503 gtgaaatgaattaaatacacaaatgctcaatgattgac 10237466  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 25653673 - 25653618
Alignment:
Q  5 gtgagatgaattaaatacacaaatgctcaatgattgactatagggttaattttacc 60  Q
    |||| ||||||||||||||||||| ||||||||||||  |||| ||||| ||||||    
T  25653673 gtgatatgaattaaatacacaaatactcaatgattgatcatagagttaactttacc 25653618  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 33848655 - 33848697
Alignment:
Q  14 attaaatacacaaatgctcaatgattgactatagggttaattt 56  Q
    |||||||||||||||||| ||||||||  ||||||||||||||    
T  33848655 attaaatacacaaatgctaaatgattggttatagggttaattt 33848697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 31878472 - 31878435
Alignment:
Q  5 gtgagatgaattaaatacacaaatgctcaatgattgac 42  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  31878472 gtgacatgaattaaatacacaaatgcttaatgattgac 31878435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 36055838 - 36055870
Alignment:
Q  10 atgaattaaatacacaaatgctcaatgattgac 42  Q
    ||||||||||| |||||||||||||||||||||    
T  36055838 atgaattaaattcacaaatgctcaatgattgac 36055870  T

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Target: scaffold0200 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 24776 - 24813
Alignment:
Q  5 gtgagatgaattaaatacacaaatgctcaatgattgac 42  Q
    |||| |||||||||||||||||||||||||||||||||    
T  24776 gtgacatgaattaaatacacaaatgctcaatgattgac 24813  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 6177864 - 6177827
Alignment:
Q  5 gtgagatgaattaaatacacaaatgctcaatgattgac 42  Q
    |||| |||||||||||||||||||||||||||||||||    
T  6177864 gtgacatgaattaaatacacaaatgctcaatgattgac 6177827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 18779360 - 18779397
Alignment:
Q  5 gtgagatgaattaaatacacaaatgctcaatgattgac 42  Q
    |||| |||||||||||||||||||||||||||||||||    
T  18779360 gtgacatgaattaaatacacaaatgctcaatgattgac 18779397  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 41643961 - 41643924
Alignment:
Q  5 gtgagatgaattaaatacacaaatgctcaatgattgac 42  Q
    |||| |||||||||||||||||||||||||||||||||    
T  41643961 gtgacatgaattaaatacacaaatgctcaatgattgac 41643924  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 39788545 - 39788576
Alignment:
Q  14 attaaatacacaaatgctcaatgattgactat 45  Q
    ||||||||||||||||||||||||||||||||    
T  39788545 attaaatacacaaatgctcaatgattgactat 39788576  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 10758264 - 10758296
Alignment:
Q  10 atgaattaaatacacaaatgctcaatgattgac 42  Q
    |||||||||||||||||||||||||||||||||    
T  10758264 atgaattaaatacacaaatgctcaatgattgac 10758296  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 28003170 - 28003204
Alignment:
Q  72 ttctcatgacttcaccagagaattttccatctttg 106  Q
    ||||||||||||||||| |||||||||||||||||    
T  28003170 ttctcatgacttcaccatagaattttccatctttg 28003204  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 2266824 - 2266852
Alignment:
Q  14 attaaatacacaaatgctcaatgattgac 42  Q
    |||||||||||||||||||||||||||||    
T  2266824 attaaatacacaaatgctcaatgattgac 2266852  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 7568678 - 7568712
Alignment:
Q  5 gtgagatgaattaaatacacaaatgctcaatgatt 39  Q
    |||| ||||||||||||||||||||||||||||||    
T  7568678 gtgacatgaattaaatacacaaatgctcaatgatt 7568712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 40640593 - 40640630
Alignment:
Q  5 gtgagatgaattaaatacacaaatgctcaatgattgac 42  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  40640593 gtgacatggattaaatacacaaatgctcaatgattgac 40640630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 5674 - 5645
Alignment:
Q  10 atgaattaaatacacaaatgctcaatgatt 39  Q
    ||||||||||||||||||||||||||||||    
T  5674 atgaattaaatacacaaatgctcaatgatt 5645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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