View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19326_low_4 (Length: 435)
Name: NF19326_low_4
Description: NF19326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19326_low_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 31816287 - 31816703
Alignment:
| Q |
18 |
cttgagagttcctagaccaaagaattggaccatctttccagtaggggaatgtcccttaaaaggaccctcaaaaaatccccaatgcctaaacttgaaagca |
117 |
Q |
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| T |
31816287 |
cttgagagttcctagaccaaagaattggaccatctttccggtaggggaatgtcccttaaaaggaccctcaaaaaatccccaatgcctaaacttgaaagca |
31816386 |
T |
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| Q |
118 |
atttcaggtggtcctgtataaactttaatcacttcccatgcaaatcctcttggaaaagctgatttgaagacttcatgagatgattcaaaagtctcttcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31816387 |
atttcaggtggtcctgtataaactttaatcacttcccatgcaaatcctcttggaaaagctgatttgaagacttcatgagatgattcaaaagtctcttcat |
31816486 |
T |
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| Q |
218 |
ttgacttgtatggcttgaaattttctggtagagaacttttcaacaatgcgttgtaacttcctaagcttagagtttcctctgcagttaatccatccctgcc |
317 |
Q |
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| T |
31816487 |
ttgacttgtatggcttgaaattttctggtagagaacttttcaacaatgcgttgtaacttcctaagcttagagtttcctctgcagttaatccatccctgcc |
31816586 |
T |
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| Q |
318 |
tacaaatggaagaattttgattatattcactattnnnnnnnnnnttaattaccgagaaaaacggaattaatcttcaattttgacgtttctaacacatgat |
417 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31816587 |
tacagatggaagaattttgattatattcactatt-aaaaaaaaattaattaccgagaaaaacggaattaatcttcaattttgacgtttctaacacatgat |
31816685 |
T |
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| Q |
418 |
catggaattatatgtgtt |
435 |
Q |
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| T |
31816686 |
catggaattatatgtgtt |
31816703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 31857163 - 31856863
Alignment:
| Q |
18 |
cttgagagttcctagaccaaagaattggaccatctttccagtaggggaatgtcccttaaaaggaccctcaaaaaatccccaatgcctaaacttgaaagca |
117 |
Q |
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|||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
31857163 |
cttgagagttcccaagccagagaattggaccatctttccagtaggggcatgtcccttaaatggaccttcaaaaaatccccaatgcctaaacttgaaagca |
31857064 |
T |
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| Q |
118 |
atttcaggtggtcctgtataaactttaatcacttcccatgcaaatcctcttggaaaagctgatttgaagacttcatgagatgattcaaaagtctcttcat |
217 |
Q |
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| T |
31857063 |
atttcaggtggtcctgtataaactttaatgatttcccatgcaaatcctcttggaaaagctgatttgaagacttcatgagatgattcaaaagtctcttcat |
31856964 |
T |
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| Q |
218 |
ttgacttgtatggcttgaaattttctggtagagaacttttcaacaatgcgttgtaacttcctaagcttagagtttcctctgcagttaatccatccctgcc |
317 |
Q |
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| T |
31856963 |
ttgacttgtatggcttgaaatcttctggcagagaacttttcaacaatgcattataacttcctatgcttagagtttcctctgcagtcaatccctccctgcc |
31856864 |
T |
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| Q |
318 |
t |
318 |
Q |
| |
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| T |
31856863 |
t |
31856863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 46 - 215
Target Start/End: Complemental strand, 20096702 - 20096533
Alignment:
| Q |
46 |
accatctttccagtaggggaatgtcccttaaaaggaccctcaaaaaatccccaatgcctaaacttgaaagcaatttcaggtggtcctgtataaactttaa |
145 |
Q |
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||||| |||||||| || | |||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||| | |
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| T |
20096702 |
accatgtttccagtgggtgcatgtcccttataaggaccttcaaaaaatccccaatgcctaaacttgtaagcaatctcagggggtccaccgtaaactttga |
20096603 |
T |
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| Q |
146 |
tcacttcccatgcaaatcctcttggaaaagctgatttgaagacttcatgagatgattcaaaagtctcttc |
215 |
Q |
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| T |
20096602 |
tgacttcccatgcaaatccccttggaaatgctgatctaaatgcttcatgagatgattcaaatgtctcttc |
20096533 |
T |
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