View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19326_low_8 (Length: 311)
Name: NF19326_low_8
Description: NF19326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19326_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 41035927 - 41036207
Alignment:
| Q |
16 |
caacaatggtattccaattaggccaaccttcgtaaacctctataaatggcctgaataatcagacatagaatttgtgaagactatgaactgtaaaaattat |
115 |
Q |
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| T |
41035927 |
caacaatggtattccaattaggccaaccttcgtaaacctctataaatggcctgaataatcagacgtagaatttgtgaagactatgaactgtaaaaattat |
41036026 |
T |
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| Q |
116 |
cgtgatggagctgaagttgatagtctctcttgcaggcaaatgtattttaggagctacaaattctcaaggaagaaattaagtatcactgggaagagcataa |
215 |
Q |
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| T |
41036027 |
cgtgatggagctgaagttgatagtctctcttgcaggcaaatgtatttcaggagctacaaattctcaaggaagaaattaagtatcactgggaagagcataa |
41036126 |
T |
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| Q |
216 |
aatgtttcagaagtgtaaaggagagtgtggtttgtgccagcaatagattaaatcataatattaagggtaattgtaatattc |
296 |
Q |
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| T |
41036127 |
aatgtttcagaagtgtaaaggagggtgtggtttgtgccagcaatagattaaatcataatattaagggtaattgtaagattc |
41036207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 297
Target Start/End: Original strand, 41030337 - 41030606
Alignment:
| Q |
25 |
tattccaattaggccaaccttcgtaaacctctataaatggcctgaataatcagacatagaatttgtgaagactatgaactgtaaaaattatcgtgatgga |
124 |
Q |
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| T |
41030337 |
tattccgattagaccaaacttcacaaacctctacaagtggccagaat---cagaagtagaatttgtgaagactatgaactcaaacaattatcgtgacaga |
41030433 |
T |
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| Q |
125 |
gctgaagttgatagtctctcttgcaggcaaatgtattttaggagctacaaattctcaaggaagaaattaagtatcactgggaagagcataaaatgtttca |
224 |
Q |
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| T |
41030434 |
gttgaagttgatagcctctcctgcaggcaagtgtacctgaggagctacaaattctccaggaagaaattgagtgtaaccgagaagaccataaaatatttca |
41030533 |
T |
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| Q |
225 |
gaagtgtaaaggagagtgtggtttgtgccagcaatagattaaatcataatattaagggtaattgtaatattcc |
297 |
Q |
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| T |
41030534 |
gcagtttaaaagagagtgtgatttgtgctagcaatatattatgttgtaatagtaagggtaatcgtaagattcc |
41030606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 40636942 - 40636804
Alignment:
| Q |
80 |
atagaatttgtgaagactatgaactgtaaaaattatcgtgatggagctgaagttgatagtctctcttgcaggcaaatgtattttaggagctacaaattct |
179 |
Q |
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| T |
40636942 |
atagaatttgtgaagacta--aactctaacgattatcataaaggagttgaaattgatggcctct-ttgcaggcaaatgtatttgaggagctaaatattct |
40636846 |
T |
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| Q |
180 |
caaggaagaaattaagtatcactgggaagagcataaaatgttt |
222 |
Q |
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| T |
40636845 |
caaggaa-aaagtaagtatcactgggaataacataaaatgttt |
40636804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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