View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19327_high_1 (Length: 512)
Name: NF19327_high_1
Description: NF19327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19327_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 496
Target Start/End: Original strand, 28877256 - 28877731
Alignment:
| Q |
19 |
taagcatgatggattaagattattgagtagaatgtactaannnnnnnnnggtgtaacgtatgatattgtatttgatctttaatgtgtannnnnnnnnnnn |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||| || |||||||||||||||||||||||| ||| |
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| T |
28877256 |
taagcatgatggattaagattattgagtagaatgtaatc-tgtttttttggtgtaatgtttgatattgtatttgatctttaatgggtatgttttcttatt |
28877354 |
T |
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| Q |
119 |
caaatttgaatgattaatgtgaaaaagttttcacctttatctcannnnnnnctctgttttctgtttcnnnnnnnnnnnnnnnntacaatttttgcttcat |
218 |
Q |
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||||||||||| || | |||| |||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |
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| T |
28877355 |
caaatttgaataatga-tgtggaaaagttttcacctttatctcatttttttctctgttttctgtttcaaaaaaaataaaaaatttcaatttttgcttcat |
28877453 |
T |
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| Q |
219 |
ggttttctcattattcttgtattggtttctgggatttcagataggtatggtattattctctgttgagttctcaaaatttgatacaaagaatgaagaaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28877454 |
ggttttctcattattcttgtattggtttctgggatttcagataggtatggtattattctctgttgagttctcaaaatttgatacaaagaatgaagaaaat |
28877553 |
T |
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| Q |
319 |
ggaatttttctcaatggtttttagaaaaattaggtttaaaatgcattgggattagggttatttaatggttctatattctgaattctgaatgttcacaatg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28877554 |
ggaatttttctcaatggtttttagaaaaattaggtttaaaatgcattgggattagggttatttaatggttctatattctgaattctgaatgttcacaatg |
28877653 |
T |
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| Q |
419 |
caacaggttttcattttcaaacaatgtgaatgtgaatactttattacttgtgctgcattattctttgagatctgtgct |
496 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28877654 |
caacaagttttcattttcaaacaatgtgaatatgaatactttattacttgtgctgcattattctttgagatctgtgct |
28877731 |
T |
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