View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19327_high_10 (Length: 252)
Name: NF19327_high_10
Description: NF19327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19327_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 32 - 233
Target Start/End: Complemental strand, 6493438 - 6493236
Alignment:
| Q |
32 |
ttaaagccacgaaataagacaataatcctttaggcatcacctcgtttgcatgaaattgatagaataaaatatgcacctcatccttcattaaatgccaaaa |
131 |
Q |
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| T |
6493438 |
ttaaagccacgaaataagacaataatcctttaggcatcacctcgtttgcatgaaattgatcgaataaaatatggacctcatccttcattaaatgccaaaa |
6493339 |
T |
|
| Q |
132 |
ctccttgaagaacacaaaattaaaaccatacgg-cccgggcttttagttccatcactctctttaaccaccctctcaatctcctcccccaaaaaaggagca |
230 |
Q |
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| T |
6493338 |
ctccttgaagaacgcaaaattaaaaccatacggccccaggcttttagttccatcactctctttaaccaccctctcaatctcctcccccaaaaaaggagca |
6493239 |
T |
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| Q |
231 |
att |
233 |
Q |
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||| |
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| T |
6493238 |
att |
6493236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 105 - 233
Target Start/End: Original strand, 44515642 - 44515770
Alignment:
| Q |
105 |
cacctcatccttcattaaatgccaaaactccttgaagaacacaaaattaaaaccatacggcccgggcttttagttccatcactctctttaaccaccctct |
204 |
Q |
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|||||||||||| | |||| |||||||||||||||||| ||||||||||||||| ||| || || ||||| | |||||||| ||||||| |||||||| |
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| T |
44515642 |
cacctcatcctttaacaaataccaaaactccttgaagaaagcaaaattaaaaccatccgggcccggattttattaccatcactatctttaatcaccctct |
44515741 |
T |
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| Q |
205 |
caatctcctcccccaaaaaaggagcaatt |
233 |
Q |
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| T |
44515742 |
caatctcctcccacaaaaaaggagcaatt |
44515770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 40084852 - 40084764
Alignment:
| Q |
121 |
aaatgccaaaactccttgaagaacacaaaattaaaaccatacgg-cccgggcttttagttccatcactctctttaaccaccctctcaat |
208 |
Q |
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|||| |||||||||||| | ||| ||||||| ||||||| ||| |||||||| ||| | |||||||||||| |||||||| ||||||| |
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| T |
40084852 |
aaataccaaaactccttaacaaacgcaaaattgaaaccatccggacccgggctcttactaccatcactctctctaaccaccttctcaat |
40084764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 11335783 - 11335888
Alignment:
| Q |
32 |
ttaaagccacgaaataagacaataatcctttaggcatcacctcgtttgcatgaaattgatagaataaaatatgcacctcatccttcattaaatgccaaaa |
131 |
Q |
| |
|
|||||| ||| || |||| |||||| | ||| |||| ||||||||||||||||||||||| || ||||| ||| ||| | ||||| |||| |||||| |
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| T |
11335783 |
ttaaagtcacaaagtaagccaataaactttttggcaccacctcgtttgcatgaaattgatcaaacaaaatccgcatctcgttcttcaacaaataccaaaa |
11335882 |
T |
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| Q |
132 |
ctcctt |
137 |
Q |
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|||||| |
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| T |
11335883 |
ctcctt |
11335888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 47551272 - 47551360
Alignment:
| Q |
72 |
ctcgtttgcatgaaattgatagaataaaatatgcacctcatccttcattaaatgccaaaactccttgaagaacacaaaattaaaaccat |
160 |
Q |
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|||||||||||| ||||||| ||| | ||| ||||||||||||||| |||| |||||| ||||| ||| ||||||||||||||| |
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| T |
47551272 |
ctcgtttgcatggaattgatcgaacataattctcacctcatccttcatcaaataccaaaatctcttgatgaaagcaaaattaaaaccat |
47551360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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