View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19327_high_3 (Length: 346)
Name: NF19327_high_3
Description: NF19327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19327_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 27774750 - 27775084
Alignment:
| Q |
1 |
tcatcggttgcaggagtagcagtactctcctcagctgagtcgcccaatttcacatcatgtactttctcaggtaagcaaacgggaagggagtcatccctca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27774750 |
tcattggttgcaggagtagcagtactctcctcagctgagtcgcccaatttcacatcatgtactttctcaggtaagcaaacaggaagggagtcatccctca |
27774849 |
T |
|
| Q |
101 |
gcatctgcaatataaaaatcaatgtaaggaaaaatatcttagagtagatgcaaatgttataatttgtagtaaaaaacaacaatagcatgtctgtttgata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27774850 |
gcatctgcaatataaaaatcaatgtaaggaaaaatatcttagagtagatgcaaatgttatcatttgtagtaaaaaacaacaatagcatgtctgtttgata |
27774949 |
T |
|
| Q |
201 |
taattgaaaacaaagaagataaacaacagccgtagttatcctggtggttggaaaataaagatgtattctaaatttaacatgtcaaaagataaaaatgtaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27774950 |
taattgaaaacaaagaagataaacaacagccgtagttatcctggtggttggaaaataaagatgtattctaaatttaacatgtcaaaagataaaaatgtaa |
27775049 |
T |
|
| Q |
301 |
aagataaatgatgtctgataagcaaacacaggttc |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
27775050 |
aagataaatgatgtctgataagcaaacacaggttc |
27775084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University