View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19327_low_12 (Length: 236)
Name: NF19327_low_12
Description: NF19327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19327_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 39744650 - 39744446
Alignment:
| Q |
22 |
tgttatagaaacagtcgtaattaaagtcaaacatttttaatgatgcggtgaatatgattgattcacaccgnnnnnnnntgacttttaaaattaaatccta |
121 |
Q |
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| T |
39744650 |
tgttatagaaacagtcgtaattaaagtcaaacatttttaatgatacggtgaatatgattgattcacaccgtaaaaaaatgacttttaaaattaaatccta |
39744551 |
T |
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| Q |
122 |
ccgttattactacc---ggtgtgaaatagttgagtaaattcattgtggttagtttttagtggagggatttggtaattgtttgtaagaatatgcgtgatca |
218 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39744550 |
ccgttattactactactggtgtgaaatagttgagtaaattcattgtggttagtttttagtggagggatttggtaattgtttgtaagaatatgcgtgatca |
39744451 |
T |
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| Q |
219 |
aaatg |
223 |
Q |
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||||| |
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| T |
39744450 |
aaatg |
39744446 |
T |
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