View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19327_low_13 (Length: 218)
Name: NF19327_low_13
Description: NF19327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19327_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 28587347 - 28587164
Alignment:
| Q |
18 |
aagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcg |
117 |
Q |
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| T |
28587347 |
aagagtgcacgtccaaatgttaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcg |
28587248 |
T |
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| Q |
118 |
cggacatacttgctgtggcagcacgtgatgcatcattcgcggtaggtggcccgtcatggacagtaaaacttggaagaagagact |
201 |
Q |
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| T |
28587247 |
cggacatacttgctgtggcagcacgtgatgcatcattcgcggtaggtggcccgtcatggacagtaaaacttggaagaagagact |
28587164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 28592533 - 28592397
Alignment:
| Q |
18 |
aagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28592533 |
aagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaaatttgtcccggagttgtgtcttgcg |
28592434 |
T |
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| Q |
118 |
cggacatacttgctgtggcagcacgtgatgcatcatt |
154 |
Q |
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| T |
28592433 |
cggacatactagctgtggcagcacgtgatgcatcatt |
28592397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 32493671 - 32493807
Alignment:
| Q |
18 |
aagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcg |
117 |
Q |
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| T |
32493671 |
aagagtgcacttccaaatattaactctgtaagaggatttgaagttattgataaagcaaaagctaatgtggagaaagtatgccctggagttgtgtcttgtg |
32493770 |
T |
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| Q |
118 |
cggacatacttgctgtggcagcacgtgatgcatcatt |
154 |
Q |
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| T |
32493771 |
ctgacatcgtagcagtagcagctcgtgatgcatcatt |
32493807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 28595459 - 28595595
Alignment:
| Q |
18 |
aagaatgcacttcctaatattaactcagtaagaggatttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcg |
117 |
Q |
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|||| ||||||||| ||| |||| || |||||||| || || | ||||||||||||||| |||| || |||||||| ||||| |||||||||||||| | |
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| T |
28595459 |
aagagtgcacttccaaatcttaattctgtaagaggtttccaagttattgataaagcaaaagctgatgtagagaaagtatgtcctggagttgtgtcttgtg |
28595558 |
T |
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| Q |
118 |
cggacatacttgctgtggcagcacgtgatgcatcatt |
154 |
Q |
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| T |
28595559 |
ctgacattgtagcaatagcggcacgtgatgcatcatt |
28595595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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