View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19327_low_3 (Length: 371)

Name: NF19327_low_3
Description: NF19327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19327_low_3
NF19327_low_3
[»] chr5 (2 HSPs)
chr5 (7-368)||(35052031-35052392)
chr5 (308-368)||(35068227-35068287)
[»] chr6 (1 HSPs)
chr6 (145-223)||(31592852-31592930)
[»] chr1 (3 HSPs)
chr1 (161-241)||(30526147-30526228)
chr1 (180-243)||(6263003-6263067)
chr1 (180-223)||(33716414-33716457)
[»] chr3 (1 HSPs)
chr3 (183-242)||(11469796-11469855)
[»] chr8 (1 HSPs)
chr8 (197-225)||(42195557-42195585)
[»] chr2 (1 HSPs)
chr2 (180-239)||(15105280-15105339)


Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 7 - 368
Target Start/End: Original strand, 35052031 - 35052392
Alignment:
Q  7 gctcgtggggcgaagctcctgcaatacgtttaagatgtaatgttataatatggatagtagatttgtagtattacatgttgtacaatgtaaaccctaatct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35052031 gctcgtggggcgaagctcctgcaatacgtttaagatgtaatgttataatatggatagtagatttgtagtattacatgttgtacaatgtaaaccctaatct 35052130  T
Q  107 ttactgatataaaggaagcggctatgcattcagagatgtagacacaattgaaagaacttcattaccaaacaacgtgtgttcattgtttgtgtttttcgta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35052131 ttactgatataaaggaagcggctatgcattcagagatgtagacacaattgaaagaacttcattaccaaacaacgtgtgttcattgtttgcgtttttcgta 35052230  T
Q  207 tctttattcttttgaaccggattgctgttctaacagtcatgcaattaattagtgagtaaaattactttgactatatgtggtaaatattattacatcttct 306  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35052231 tctttattcttttgaaccggattgctgttctaacagtcatccaattaattggtgagtaaaattgctttgactatatgtggtaaatattattacatcttct 35052330  T
Q  307 tccactgtgaattcttctctgtccttttcttatgtggttgcacttgattttctagcatatct 368  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35052331 tccactgtgaatttttctctgtccttttcttatgtggttgcacttgattttctagcatatct 35052392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 368
Target Start/End: Original strand, 35068227 - 35068287
Alignment:
Q  308 ccactgtgaattcttctctgtccttttcttatgtggttgcacttgattttctagcatatct 368  Q
    |||||||||||| |||||| ||||||||||||||||| |  ||| ||||||||||||||||    
T  35068227 ccactgtgaatttttctctatccttttcttatgtggtcgtgcttaattttctagcatatct 35068287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 31592852 - 31592930
Alignment:
Q  145 tagacacaattgaaagaacttcattaccaaacaacgtgtgttcattgtttgtgtttttcgtatctttattcttttgaac 223  Q
    ||||||||||||   ||||||||| |||||||| | |||||||||||||||||||||| |||||||||||||| |||||    
T  31592852 tagacacaattggccgaacttcataaccaaacatcatgtgttcattgtttgtgttttttgtatctttattcttgtgaac 31592930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 30526228 - 30526147
Alignment:
Q  161 aacttcattaccaaacaacgtgtgttcat-tgtttgtgtttttcgtatctttattcttttgaac-cggattgctgttctaaca 241  Q
    |||||| |||||||||| |||||||| || |||||||||||| | |||||||||||||||||||  |||||||||||||||||    
T  30526228 aacttcgttaccaaacatcgtgtgtttatctgtttgtgtttt-catatctttattcttttgaactgggattgctgttctaaca 30526147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 6263003 - 6263067
Alignment:
Q  180 gtgtgttcattgtttgtgtttttcgtatctttattcttttgaacc-ggattgctgttctaacagt 243  Q
    ||||||||  |||||| ||||||||||||| | |||||||||||| |||||| ||||||||||||    
T  6263003 gtgtgttctctgtttgcgtttttcgtatctattttcttttgaaccaggattgttgttctaacagt 6263067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 33716414 - 33716457
Alignment:
Q  180 gtgtgttcattgtttgtgtttttcgtatctttattcttttgaac 223  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||    
T  33716414 gtgtgtttattgtttgcatttttcgtatctttattcttttgaac 33716457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 11469855 - 11469796
Alignment:
Q  183 tgttcattgtttgtgtttttcgtatctttattcttttgaaccggattgctgttctaacag 242  Q
    |||||||| |||||||||||||||| | |||||||||| ||||| ||| |||||||||||    
T  11469855 tgttcattttttgtgtttttcgtatttgtattcttttgtaccgggttgttgttctaacag 11469796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 42195557 - 42195585
Alignment:
Q  197 gtttttcgtatctttattcttttgaaccg 225  Q
    |||||||||||||||||||||||||||||    
T  42195557 gtttttcgtatctttattcttttgaaccg 42195585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 15105280 - 15105339
Alignment:
Q  180 gtgtgttcattgtttgtgtttttcgtatctttattcttttgaaccgga-ttgctgttctaa 239  Q
    |||||||||||||| | ||||||| ||| ||||||||||||||||| | ||||||||||||    
T  15105280 gtgtgttcattgtt-gcgtttttcatatatttattcttttgaaccgcagttgctgttctaa 15105339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University