View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19327_low_6 (Length: 318)

Name: NF19327_low_6
Description: NF19327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19327_low_6
NF19327_low_6
[»] chr1 (4 HSPs)
chr1 (9-124)||(6493886-6494001)
chr1 (180-318)||(6494000-6494128)
chr1 (108-157)||(28061825-28061874)
chr1 (108-145)||(7953497-7953534)
[»] chr2 (4 HSPs)
chr2 (92-239)||(44691581-44691728)
chr2 (24-294)||(44514835-44515105)
chr2 (30-158)||(40919603-40919730)
chr2 (267-309)||(38906849-38906891)
[»] chr5 (3 HSPs)
chr5 (9-226)||(29300151-29300368)
chr5 (15-73)||(18305824-18305882)
chr5 (108-164)||(10428993-10429049)
[»] chr8 (5 HSPs)
chr8 (108-158)||(27179872-27179922)
chr8 (16-153)||(13310267-13310404)
chr8 (24-76)||(31400794-31400846)
chr8 (23-134)||(29576479-29576589)
chr8 (15-51)||(44682821-44682857)
[»] chr4 (1 HSPs)
chr4 (16-77)||(47550150-47550211)
[»] chr3 (3 HSPs)
chr3 (8-73)||(49455196-49455261)
chr3 (108-256)||(9367507-9367655)
chr3 (195-300)||(43075135-43075240)
[»] chr6 (2 HSPs)
chr6 (195-300)||(14457830-14457935)
chr6 (187-239)||(14431795-14431847)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 6493886 - 6494001
Alignment:
Q  9 ttttagttggtggtggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggtgtgcgcttcaatggggaaggaatggttttgt 108  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6493886 tttttgttggtggcggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggtgtgcgcttcaatggggaaggaatggttttgt 6493985  T
Q  109 ctcatcttcaatatgc 124  Q
    ||||||||||||||||    
T  6493986 ctcatcttcaatatgc 6494001  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 180 - 318
Target Start/End: Original strand, 6494000 - 6494128
Alignment:
Q  180 gctcttttaaggggttttgagatggcatccgggcttaaagttaatttctttaagagttgtcttatcggaatcaatgtatcgcgggattttatggacatgg 279  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |          ||||||||||    
T  6494000 gctcttttaaggggttttgagatggcatccaggcttaaagttaatttctttaagagttgtcttatcggaatcaatgtacc----------atggacatgg 6494089  T
Q  280 cttgcaacttcttgaattgtaatgaaaggatctattcct 318  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6494090 cttgcaacttcttgaattgtaatgaaaggatctattcct 6494128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 28061874 - 28061825
Alignment:
Q  108 tctcatcttcaatatgcggatgatactatttgtatagggaaggcgacggt 157  Q
    ||||||||||||||||| ||||||||| |||||||||||| | |||||||    
T  28061874 tctcatcttcaatatgccgatgatactctttgtatagggatgccgacggt 28061825  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 7953497 - 7953534
Alignment:
Q  108 tctcatcttcaatatgcggatgatactatttgtatagg 145  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  7953497 tctcatcttcaatatgcagatgatactctttgtatagg 7953534  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 239
Target Start/End: Original strand, 44691581 - 44691728
Alignment:
Q  92 ggaaggaatggttttgtctcatcttcaatatgcggatgatactatttgtatagggaaggcgacggtgaacaattaatgggtgctcatggctcttttaagg 191  Q
    |||||||||||  |||||||| |||||||||||||||||||| |||||||| ||||| || |||||| | |||| ||||||| | |  ||||| ||||||    
T  44691581 ggaaggaatggaattgtctcaccttcaatatgcggatgatacgatttgtatggggaaagctacggtggaaaatttatgggtgttgaaagctctcttaagg 44691680  T
Q  192 ggttttgagatggcatccgggcttaaagttaatttctttaagagttgt 239  Q
    |||||||||||||  |||||  | | ||||||||||||||| ||||||    
T  44691681 ggttttgagatggtgtccggtttaagagttaatttctttaaaagttgt 44691728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 294
Target Start/End: Complemental strand, 44515105 - 44514835
Alignment:
Q  24 gaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggtgtgcgcttcaatggggaaggaatggttttgtctcatcttcaatatg 123  Q
    |||||||| ||||| || ||||||||||||| |||||| ||||| ||||||||| | || ||  ||  ||| ||| ||   |||||||| ||||||  ||    
T  44515105 gaaggtttgagtgggttaatgaggaatgtggcgaggctcaatttatttgaaggttttcggtttcatacggatggattgtccttgtctcaccttcaacttg 44515006  T
Q  124 cggatgatactatttgtatagggaaggcgacggtgaacaattaatgggtgctcatggctcttttaaggggttttgagatggcatccgggcttaaagttaa 223  Q
    ||||||||||||||||| ||||||||||||||||||| ||||  | |    | | ||||||  | ||||  ||||| |||||||||||||| ||||||||    
T  44515005 cggatgatactatttgtctagggaaggcgacggtgaataatttgtagacaattaaggctctacttagggaatttgaaatggcatccgggctcaaagttaa 44514906  T
Q  224 tttctttaagagttgtcttatcggaatcaatgtatcgcgggattttatggacatggcttgcaacttcttga 294  Q
    ||| || || |||||  | || ||  | |||||| | | |||||||||||| ||||| |||||||| ||||    
T  44514905 ttttttcaaaagttgcttaattggtttaaatgtaactcaggattttatggatatggcgtgcaactttttga 44514835  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 40919603 - 40919730
Alignment:
Q  30 tttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggtgtgcgcttcaatggggaaggaatggttttgtctcatcttcaatatgcggatg 129  Q
    |||||||| |||||||||||||  | ||||  |||||||||||||||| |  |||||||  ||||||| | |||  | || |||||||||||||| || |    
T  40919603 tttagtgggttgatgaggaatgcagagaggtgtaatttgtttgaaggttttggcttcaagagggaagggacggtcatttcgcatcttcaatatgccga-g 40919701  T
Q  130 atactatttgtatagggaaggcgacggtg 158  Q
    ||||| |||||||||||||||| ||||||    
T  40919702 atactctttgtatagggaaggcaacggtg 40919730  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 38906849 - 38906891
Alignment:
Q  267 tttatggacatggcttgcaacttcttgaattgtaatgaaagga 309  Q
    |||||||| ||||||||||||||||||||||||| | ||||||    
T  38906849 tttatggagatggcttgcaacttcttgaattgtagtcaaagga 38906891  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 29300151 - 29300368
Alignment:
Q  9 ttttagttggtggtggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggtgtgcgcttcaatggggaaggaatggttttgt 108  Q
    |||| ||||||||  ||||||||||||||  | |||||||||||||| ||   |||| |||| |||||| | || ||  ||| ||| ||| ||||||| |    
T  29300151 tttttgttggtggccgaaggttttagtgggcttatgaggaatgtggttagaaataatatgttcgaaggtcttcgatttcatgaggagggattggttttat 29300250  T
Q  109 ctcatcttcaatatgcggatgatactatttgtatagggaaggcgacggtgaacaattaatgggtgctcatggctcttttaaggggttttgagatggcatc 208  Q
    | || ||||||||||||||||||||||||||||| || ||||| |||||| | ||||  |||||  | | ||| || || ||||| ||||||||||| ||    
T  29300251 cgcaccttcaatatgcggatgatactatttgtatgggaaaggctacggtggaaaatttgtgggtattaaaggcgctcttgagggggtttgagatggcttc 29300350  T
Q  209 cgggcttaaagttaattt 226  Q
    ||||||||| || |||||    
T  29300351 cgggcttaaggtgaattt 29300368  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 18305882 - 18305824
Alignment:
Q  15 ttggtggtggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttga 73  Q
    ||||||| ||||||||||||||| |||||||||||||||||| || | || ||||||||    
T  18305882 ttggtggcggaaggttttagtgggttgatgaggaatgtggtgcggttaaacttgtttga 18305824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 10428993 - 10429049
Alignment:
Q  108 tctcatcttcaatatgcggatgatactatttgtatagggaaggcgacggtgaacaat 164  Q
    ||||| || |||||||| ||||||||||||||||| ||||| || ||||||||||||    
T  10428993 tctcacctccaatatgccgatgatactatttgtatggggaaagcaacggtgaacaat 10429049  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 27179872 - 27179922
Alignment:
Q  108 tctcatcttcaatatgcggatgatactatttgtatagggaaggcgacggtg 158  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  27179872 tctcatcttcaatatgcggatgatactatttgtctaggggaggcgacggtg 27179922  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 13310267 - 13310404
Alignment:
Q  16 tggtggtggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggtgtgcgcttcaatggggaaggaatggttttgtctcatct 115  Q
    |||||| |||||| |||||| | ||||||||||||| ||| ||||  ||||||||||| ||| | || || || | ||  ||| ||||| | || ||| |    
T  13310267 tggtggcggaagggtttagtaggttgatgaggaatgcggttaggcggaatttgtttgagggtttccggtttaaggaggttggattggttatatcacattt 13310366  T
Q  116 tcaatatgcggatgatactatttgtatagggaaggcga 153  Q
     ||||||| ||||||||||||||| |||||||||||||    
T  13310367 acaatatgtggatgatactatttgcatagggaaggcga 13310404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 31400794 - 31400846
Alignment:
Q  24 gaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaagg 76  Q
    |||||||||||||| |||||||||||||| ||| | |||||||| ||||||||    
T  31400794 gaaggttttagtgggttgatgaggaatgtagtgcgccttaatttatttgaagg 31400846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 29576589 - 29576479
Alignment:
Q  23 ggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggtgtgcgcttcaatggggaaggaatggttttgtctcatcttcaatat 122  Q
    ||||||||||||||| |||||||| ||||| ||| |||| ||||| ||||||||| | |  || |   ||||||| |||||  | |||||||||||||||    
T  29576589 ggaaggttttagtgggttgatgagaaatgttgtgcggctaaatttatttgaaggt-tccattttaggagggaagggatggtgatatctcatcttcaatat 29576491  T
Q  123 gcggatgatact 134  Q
    || |||||||||    
T  29576490 gctgatgatact 29576479  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 44682821 - 44682857
Alignment:
Q  15 ttggtggtggaaggttttagtggcttgatgaggaatg 51  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  44682821 ttggtggcggaaggttttagtggcttaatgaggaatg 44682857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 47550211 - 47550150
Alignment:
Q  16 tggtggtggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggt 77  Q
    |||||| |||||| ||| |||| ||||||||||||| |||||| || |||||||||||||||    
T  47550211 tggtggcggaaggctttggtggtttgatgaggaatgcggtgagactcaatttgtttgaaggt 47550150  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 49455196 - 49455261
Alignment:
Q  8 gttttagttggtggtggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttga 73  Q
    ||||| |||||||| ||||||||||||||| |||||||| |||| ||||  || ||||||||||||    
T  49455196 gtttttgttggtggcggaaggttttagtgggttgatgagaaatgcggtggagcgtaatttgtttga 49455261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 256
Target Start/End: Complemental strand, 9367655 - 9367507
Alignment:
Q  108 tctcatcttcaatatgcggatgatactatttgtatagggaaggcgacggtgaacaattaatgggtgctcatggctcttttaaggggttttgagatggcat 207  Q
    ||||||||||||||||||||||||||| | || |||||| | ||  ||||| | |||   |||  ||| | |||  | || ||||||||||||||||| |    
T  9367655 tctcatcttcaatatgcggatgatactttatgcataggggaagcttcggtggataatctttggacgcttaaggcgttgttgaggggttttgagatggctt 9367556  T
Q  208 ccgggcttaaagttaatttctttaagagttgtcttatcggaatcaatgt 256  Q
    | || |||||||||||||| | |||||||||| | || ||||| |||||    
T  9367555 cgggtcttaaagttaatttttataagagttgtttgatgggaattaatgt 9367507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 300
Target Start/End: Complemental strand, 43075240 - 43075135
Alignment:
Q  195 tttgagatggcatccgggcttaaagttaatttctttaagagttgtcttatcggaatcaatgtatcgcgggattttatggacatggcttgcaacttcttga 294  Q
    ||||||||||| |||||| | || || ||||| | |||||||||| | || |||||||||||    | |||||||||| | ||||| ||||| |||||||    
T  43075240 tttgagatggcttccgggttaaaggtgaatttttataagagttgtttgatgggaatcaatgtcaacccggattttatgaatatggcgtgcaatttcttga 43075141  T
Q  295 attgta 300  Q
    ||||||    
T  43075140 attgta 43075135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 300
Target Start/End: Original strand, 14457830 - 14457935
Alignment:
Q  195 tttgagatggcatccgggcttaaagttaatttctttaagagttgtcttatcggaatcaatgtatcgcgggattttatggacatggcttgcaacttcttga 294  Q
    |||||||||||||||||  | || |||||||| | |||||||||| | || ||||| |||||  ||  ||| |||||||| ||||| || ||||| ||||    
T  14457830 tttgagatggcatccggattgaaggttaatttttataagagttgtttgatgggaattaatgtggcgacggaatttatggatatggcgtgaaactttttga 14457929  T
Q  295 attgta 300  Q
    ||||||    
T  14457930 attgta 14457935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 14431795 - 14431847
Alignment:
Q  187 taaggggttttgagatggcatccgggcttaaagttaatttctttaagagttgt 239  Q
    |||| |||||||||||||| |||||||| |||||||| || | ||||||||||    
T  14431795 taagaggttttgagatggcttccgggctaaaagttaacttttataagagttgt 14431847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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