View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19327_low_8 (Length: 297)
Name: NF19327_low_8
Description: NF19327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19327_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 12746924 - 12746637
Alignment:
| Q |
13 |
catcacatgaaaacaaagactcgtggtaatgagggatgtgcgacacta-------------gtaaagcgtatgatcgtatcgactgagattttttgaatg |
99 |
Q |
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| T |
12746924 |
catcacatgaaaacaaagactcgtggtaatgagggatgtgcgacgctaaaactggacattagtaaaacgtatgatcgtatcgactgaaattttttgaatg |
12746825 |
T |
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| Q |
100 |
atgatgaaaatgggctttaatgataaatggatacattggatgaatatgtgcgtggtgtcaattgactattctacgttggtcaacaatgaatcggttgggc |
199 |
Q |
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| T |
12746824 |
atgatgaaaatgagctttaatgataaatggatacattggatgaatatgtgcgtggtgccaattgactattctacgttggtcaacaatgaatcggttgggc |
12746725 |
T |
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| Q |
200 |
cagttattcctgggaaaggtttgcatcaaggagaccctttgtccacgtatttgttcattatttgtgcagaggccgggttgccctatat |
287 |
Q |
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| T |
12746724 |
cagttattcccgggaaaggtttgcatcaaggagaccctttgtccacgtatttgttcattatttgtgcagaggtcgggtagccctatat |
12746637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 12810008 - 12809721
Alignment:
| Q |
13 |
catcacatgaaaacaaagactcgtggtaatgagggatgtgcgacactag-------------taaagcgtatgatcgtatcgactgagattttttgaatg |
99 |
Q |
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| T |
12810008 |
catcacatgaaaacaaagactcgtggtaatgagggatgtacgacgctaaaactggacattaataaagcgtatgattgtatcgactgaaattttttgaatg |
12809909 |
T |
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| Q |
100 |
atgatgaaaatgggctttaatgataaatggatacattggatgaatatgtgcgtggtgtcaattgactattctacgttggtcaacaatgaatcggttgggc |
199 |
Q |
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| T |
12809908 |
atgatgaaaatgagctttaatgataaatggatacattggatgaatatgtgcgtggtgccaattgactattctacgttggtcaacaatgaatcggttgggc |
12809809 |
T |
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| Q |
200 |
cagttattcctgggaaaggtttgcatcaaggagaccctttgtccacgtatttgttcattatttgtgcagaggccgggttgccctatat |
287 |
Q |
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| T |
12809808 |
cagttattcctgggaaaggtttgcatcaaggagaccctttgtccacgtatttgttcattatttgtgcagaggccgggtagccctatat |
12809721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 17660631 - 17660525
Alignment:
| Q |
100 |
atgatgaaaatgggctttaatgataaatggatacattggatgaatatgtgcgtggtgtcaattgactattctacgttggtcaacaatgaatcggttgggc |
199 |
Q |
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||||| |||||||||||| |||| |||||||| |||||||||| ||||| ||| ||| | ||||||| | |||||| ||||||||| ||||||| |
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| T |
17660631 |
atgattaaaatgggctttgatgacaaatggattcattggatgagcatgtgtctggagtctgtagactattatgtgttggttaacaatgaagttgttgggc |
17660532 |
T |
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| Q |
200 |
cagttat |
206 |
Q |
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||||||| |
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| T |
17660531 |
cagttat |
17660525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 271
Target Start/End: Complemental strand, 21977146 - 21976939
Alignment:
| Q |
69 |
tatgatcgtatcgactgagattttttgaa-----tgatgatgaaaatgggctttaatgataaatggatacattggatgaatatgtgcgtggtgtcaattg |
163 |
Q |
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||||||||||||||||| || |||||||| ||||| |||||| ||| | |||||||| |||||||||||| |||| |||||| || ||| ||| |
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| T |
21977146 |
tatgatcgtatcgactgggaatttttgaagcaggtgatgctgaaaaggggttataatgatagatggatacattgaatgagtatgtgtgttaagtcggttg |
21977047 |
T |
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| Q |
164 |
actattctacgttggtcaacaatgaatcggttgggccagttattcctgggaaaggtttgcatcaaggagaccctttgtccacgtatttgttcattatttg |
263 |
Q |
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| T |
21977046 |
attactctgcgttggtcaactatgaattagtggggccagttattcctggaagaggtttgcgtcaagtagaccctttatccccgtattttttcattatttg |
21976947 |
T |
|
| Q |
264 |
tgcagagg |
271 |
Q |
| |
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||| |||| |
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| T |
21976946 |
tgcggagg |
21976939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 271
Target Start/End: Complemental strand, 24410636 - 24410470
Alignment:
| Q |
105 |
gaaaatgggctttaatgataaatggatacattggatgaatatgtgcgtggtgtcaattgactattctacgttggtcaacaatgaatcggttgggccagtt |
204 |
Q |
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| T |
24410636 |
gaaaatgagttttaatgatagatggatacaatggatgagtatctgcgtggagtcggttgactactctatgttggtcaacaatgaatcagctaggttagtt |
24410537 |
T |
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| Q |
205 |
attcctgggaaaggtttgcatcaaggagaccctttgtccacgtatttgttcattatttgtgcagagg |
271 |
Q |
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|||| || | |||||| | ||||||| | ||||| |||||||||||||||||||||| |||| |
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| T |
24410536 |
attcttgtgcgaggtttatgttaaggagagtcgatgtccccgtatttgttcattatttgtgcggagg |
24410470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 14688171 - 14688277
Alignment:
| Q |
100 |
atgatgaaaatgggctttaatgataaatggatacattggatgaatatgtgcgtggtgtcaattgactattctacgttggtcaacaatgaatcggttgggc |
199 |
Q |
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||||| |||||||||||| |||| |||||||| |||||||||| ||||| ||| ||| | ||||||| | |||||| ||||||||| ||||||| |
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| T |
14688171 |
atgattaaaatgggctttgatgacaaatggatccattggatgagcatgtgtttggagtctgtagactattatgtgttggttaacaatgaagttgttgggc |
14688270 |
T |
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| Q |
200 |
cagttat |
206 |
Q |
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||||||| |
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| T |
14688271 |
cagttat |
14688277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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