View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19327_low_9 (Length: 288)

Name: NF19327_low_9
Description: NF19327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19327_low_9
NF19327_low_9
[»] chr7 (2 HSPs)
chr7 (9-272)||(41875669-41875932)
chr7 (197-248)||(5269468-5269519)
[»] chr8 (3 HSPs)
chr8 (35-106)||(40868457-40868528)
chr8 (204-245)||(31705029-31705070)
chr8 (197-246)||(41620374-41620423)
[»] chr1 (4 HSPs)
chr1 (35-92)||(24817944-24818001)
chr1 (194-246)||(36641810-36641862)
chr1 (132-186)||(24817795-24817849)
chr1 (208-248)||(45234146-45234186)
[»] chr2 (1 HSPs)
chr2 (204-248)||(3423849-3423893)
[»] chr4 (1 HSPs)
chr4 (204-244)||(1404367-1404407)
[»] chr3 (1 HSPs)
chr3 (192-248)||(32069084-32069139)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 41875669 - 41875932
Alignment:
Q  9 gagatgaagttgcgaatatattgcgacaagaaaccggtgctatatttataccttcttctaatgatggccgcatactgaggtagagtgtcgaatgttgatt 108  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41875669 gagatgaagttgcgtatatattacgacaagaaaccggtgctatatttataccttcttctaatgatggccgcatactgaggtagagtgtcgaatgttgatt 41875768  T
Q  109 aatgttgattatagatcatccaagacttatttagataaacaatttaattttgtgttagtagcaaaaacacttattatataagtacttacttataaataag 208  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41875769 aatgttgattatagatcatccaagacttatttagataaacaacttaattttgtgttagtagcaaaaacacttattatataagtacttacttataaataag 41875868  T
Q  209 ttatttctgtactaaaagataaaataaggtcaaattatttaatgtaagctataacctaattttt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41875869 ttatttctgtactaaaagataaaataaggtcaaattatttaatataagctataacctaattttt 41875932  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 5269468 - 5269519
Alignment:
Q  197 cttataaataagttatttctgtactaaaagataaaataaggtcaaattattt 248  Q
    |||||| |||| |||||||| || ||||||||||||||| ||||||||||||    
T  5269468 cttatatataaattatttctttaataaaagataaaataaagtcaaattattt 5269519  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 40868528 - 40868457
Alignment:
Q  35 caagaaaccggtgctatatttataccttcttctaatgatggccgcatactgaggtagagtgtcgaatgttga 106  Q
    |||||||| |||||||| ||||||| | ||| ||||||||| |||||||||||||| | ||| |||||||||    
T  40868528 caagaaactggtgctatttttatacatccttataatgatgggcgcatactgaggtacactgttgaatgttga 40868457  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 31705029 - 31705070
Alignment:
Q  204 ataagttatttctgtactaaaagataaaataaggtcaaatta 245  Q
    ||||| |||||||||||||||||||||||| | |||||||||    
T  31705029 ataagctatttctgtactaaaagataaaatcatgtcaaatta 31705070  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 41620423 - 41620374
Alignment:
Q  197 cttataaataagttatttctgtactaaaagataaaataaggtcaaattat 246  Q
    |||||| ||||||||||| ||||  |||||||||||||| ||||||||||    
T  41620423 cttatatataagttatttttgtaacaaaagataaaataaagtcaaattat 41620374  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 24818001 - 24817944
Alignment:
Q  35 caagaaaccggtgctatatttataccttcttctaatgatggccgcatactgaggtaga 92  Q
    ||||||||  ||||||| | |||||||||||| ||||||||||||||| |||||||||    
T  24818001 caagaaacaagtgctatctatataccttcttcaaatgatggccgcataatgaggtaga 24817944  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 36641810 - 36641862
Alignment:
Q  194 ttacttataaataagttatttctgtactaaaagataaaataaggtcaaattat 246  Q
    ||||||||| ||||||||||||| ||  |||||||||||||| ||||||||||    
T  36641810 ttacttatatataagttatttctataacaaaagataaaataaagtcaaattat 36641862  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 24817849 - 24817795
Alignment:
Q  132 gacttatttagataaacaatttaattttgtgttagtagcaaaaacacttattata 186  Q
    ||||||||||||||||||| |||| || ||||| ||| || ||||||||||||||    
T  24817849 gacttatttagataaacaacttaacttagtgtttgtaacataaacacttattata 24817795  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 45234146 - 45234186
Alignment:
Q  208 gttatttctgtactaaaagataaaataaggtcaaattattt 248  Q
    ||||||||| || ||||||||||||||| ||||||||||||    
T  45234146 gttatttctataataaaagataaaataaagtcaaattattt 45234186  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 3423893 - 3423849
Alignment:
Q  204 ataagttatttctgtactaaaagataaaataaggtcaaattattt 248  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||    
T  3423893 ataagttatttttgtaccaaaagataaaataaagtcaaattattt 3423849  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 1404367 - 1404407
Alignment:
Q  204 ataagttatttctgtactaaaagataaaataaggtcaaatt 244  Q
    ||||| ||||||| || ||||||||||||||||||||||||    
T  1404367 ataagctatttctataataaaagataaaataaggtcaaatt 1404407  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 32069084 - 32069139
Alignment:
Q  192 acttacttataaataagttatttctgtactaaaagataaaataaggtcaaattattt 248  Q
    ||||| ||||||||||||||||||| ||  |||||||||||||| ||||||| ||||    
T  32069084 acttaattataaataagttatttctata-aaaaagataaaataaagtcaaataattt 32069139  T

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